mRNA_Ecto-sp13_S_contig12039.1740.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12039.1740.1
Unique NamemRNA_Ecto-sp13_S_contig12039.1740.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12039.1740.1 vs. uniprot
Match: D7FMP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP4_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 2.130e-96
Identity = 169/193 (87.56%), Postives = 176/193 (91.19%), Query Frame = 1 
Query:    1 TRANEEHRLSSRCRHHQHRKGTPRRSPERSNRRAKEGEKIPATIAAPASHRSGRGGDXTSRXARQKEPRASARSAGTAASFCSSKSGRGLPASYCESGVPSGRTTSRSLTSSAAISRTDYSTDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLTAPPRTTR 579
            T A E+ RLSSRCRHHQ  KGTPRRS ERSNRR KEGE+IPATIAAPASHRSG GGD T+R AR +EP ASARSAGTAASF SSK GRGLP++YC SGVPSGRTTSRSLTSSAAIS TDY+TDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRL APPRTTR
Sbjct:    8 TTAKEQSRLSSRCRHHQQCKGTPRRSLERSNRRPKEGEEIPATIAAPASHRSGGGGDGTNRTARHEEPTASARSAGTAASFSSSKGGRGLPSAYCGSGVPSGRTTSRSLTSSAAISLTDYATDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLAAPPRTTR 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12039.1740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMP4_ECTSI2.130e-9687.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12039contigEcto-sp13_S_contig12039:3351..5092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size582
Hectar predicted targeting categoryother localisation
Exons3
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462639.2965786-CDS-Ecto-sp13_S_contig12039:3350..34461681462639.2965786-CDS-Ecto-sp13_S_contig12039:3350..3446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12039 3351..3446 -
1681462639.305366-CDS-Ecto-sp13_S_contig12039:3956..40651681462639.305366-CDS-Ecto-sp13_S_contig12039:3956..4065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12039 3957..4065 -
1681462639.3136563-CDS-Ecto-sp13_S_contig12039:4715..50921681462639.3136563-CDS-Ecto-sp13_S_contig12039:4715..5092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12039 4716..5092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12039.1740.1prot_Ecto-sp13_S_contig12039.1740.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12039 3351..5092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12039.1740.1

>prot_Ecto-sp13_S_contig12039.1740.1 ID=prot_Ecto-sp13_S_contig12039.1740.1|Name=mRNA_Ecto-sp13_S_contig12039.1740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
TRANEEHRLSSRCRHHQHRKGTPRRSPERSNRRAKEGEKIPATIAAPASH
RSGRGGDGTSRTARQKEPRASARSAGTAASFCSSKSGRGLPASYCESGVP
SGRTTSRSLTSSAAISRTDYSTDTPRETVRTTTTMAMSTARAEATLAVLE
AERAQLEHRLKKVEDELRQERILSKENNKKRGHRLTAPPRTTR*
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mRNA from alignment at Ecto-sp13_S_contig12039:3351..5092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12039.1740.1 ID=mRNA_Ecto-sp13_S_contig12039.1740.1|Name=mRNA_Ecto-sp13_S_contig12039.1740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1742bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12039:3351..5092- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGGGCTAATGAGGAGCATCGATTGTCATCGCGGTGTCGGCATCATCA
GCATCGCAAGGGAACCCCTCGCCGCTCCCCCGAGCGGTCTAACAGACGAG
CGAAGGAAGGCGAAAAAATCCCCGCAACGATAGCCGCCCCAGCTTCGCAC
AGAAGTGGTCGTGGTGGCGATGGTACGAGTAGGACGGCGAGACAAAAAGA
ACCACGGGCGAGCGCGCGATCTGCAGGCACCGCTGCTTCTTTTTGTTCTT
CGAAGAGTGGGCGGGGGCTGCCAGCGTCGTACTGTGAAAGCGGGGTTCCT
TCGGGCAGAACAACATCAAGATCGCTCACAAGTAGCGCAGCGATCAGCCG
TACCGACTACTCCACAGACACTCCAAGGTGATCCATGAGAAGAGTTACAC
TTTGTTATGAGCCCACGGGCAGGAAAACACAAAAGACTAATTTCCTAGCG
ACTCCAAGTTTGTGGAATCAAGCCGCCATCTACATACGGCTGGTATGTCG
ACGAGCACGCTTAATTATATGGAGGTTTTCTCAATACGGATGATGAACCT
TTTCGTCCCAGGTGCTCCCAGGGAAGAGTTTCCTTTAGCGTATCTTGGCG
ATATCAGCCAAATACTGCGAGTGGTTGCACCAGGAATAACGTGGTTTGCC
TCGCAGATGTTCCCACAAACTTTCCTAGGAGAGATTTTTTCTCTGCTTGC
AGGTATTCTTGTTGTCGCGAGTACAGTTCGCCGTGGTACCATAGCACGAG
ATCCGTGTGCGGTTGGTACAGTTTGGAAAAAAATCTTTAGGCTAAAACTA
CACCTTGCTGTCACTCCAACCTTTTTGGATCACACGCCGCAGGCCAAGTT
GTCGTGAACTAGAACGCGACCACAACGAACACCCACGAGCAGTGCGTGGT
GATACGGGGGAAGCCGATCTGTTGCACCCGAAACTGTGTGGTCATCACAT
TCGAGAGGAATAGTACAAGTTGGACCGACGACAGGTATCTCATATCGTTC
CTGTTTGCTACTTTCTGTTTTTGAAAGGGAGACCGTTCGAACGACGACCA
CCATGGCCATGAGCACGGCGAGAGCAGAGGCTACGCTAGCCGTGCTGGAG
GCGGAACGAGCACAGTTGGAACATCGTCTGAAGAAGGTAAGATCAAGAGA
AGAAATTATTCGAAGAAAGTGTACGAGAGGGAGGATAACATTGGAGAAGC
AGCGTGTGGTTATCCGAGTAGGATGTTATTCGATGAGATGGCTATATTAT
TTCTTCACTGTTTGACTTCTTGCAATTTGACCCTATCTATATTTGATGCT
CGGTAGGCTTGCCTCCCTCTCGAAGAAGAGCCTTGTCACGCTTTTCCACG
TGCATGTTGTTCATCCACTTTCACACTCGCGATTATACAGCAATCCCTGT
CTCTGCGCCCCTCTTTAGCTGGAAGAGAAGCGGCCATTGGAGCGACAGCA
GGCAAACGATACGAAACGTTACAGAGACAGATCGCAAAAATGGAGAGGGT
GTCGCGCGTGACCCGTCTTCGATCGCGTAGTAGTCATCACTTCTCGCCAT
TTGTGCGACTCTCCCACGTCCTCCTGGTTCGGTGCTAACCGCTCTATTTT
CGTCGCCGCTACGGGCCGCTGGCCTTGCGTTGTGTTTGGACCAAAGGTAG
AGGACGAGCTGAGGCAGGAGCGAATTTTGAGCAAGGAGAACAACAAAAAG
CGTGGACACCGCCTTACGGCACCGCCAAGAACGACCCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12039:3351..5092-

>mRNA_Ecto-sp13_S_contig12039.1740.1 ID=mRNA_Ecto-sp13_S_contig12039.1740.1|Name=mRNA_Ecto-sp13_S_contig12039.1740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12039:3351..5092- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGGGCTAATGAGGAGCATCGATTGTCATCGCGGTGTCGGCATCATCA
GCATCGCAAGGGAACCCCTCGCCGCTCCCCCGAGCGGTCTAACAGACGAG
CGAAGGAAGGCGAAAAAATCCCCGCAACGATAGCCGCCCCAGCTTCGCAC
AGAAGTGGTCGTGGTGGCGATGGTACGAGTAGGACGGCGAGACAAAAAGA
ACCACGGGCGAGCGCGCGATCTGCAGGCACCGCTGCTTCTTTTTGTTCTT
CGAAGAGTGGGCGGGGGCTGCCAGCGTCGTACTGTGAAAGCGGGGTTCCT
TCGGGCAGAACAACATCAAGATCGCTCACAAGTAGCGCAGCGATCAGCCG
TACCGACTACTCCACAGACACTCCAAGGGAGACCGTTCGAACGACGACCA
CCATGGCCATGAGCACGGCGAGAGCAGAGGCTACGCTAGCCGTGCTGGAG
GCGGAACGAGCACAGTTGGAACATCGTCTGAAGAAGGTAGAGGACGAGCT
GAGGCAGGAGCGAATTTTGAGCAAGGAGAACAACAAAAAGCGTGGACACC
GCCTTACGGCACCGCCAAGAACGACCCGATGA
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