prot_Ecto-sp13_S_contig12039.1739.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12039.1739.1
Unique Nameprot_Ecto-sp13_S_contig12039.1739.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length109
Homology
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A6H5KZV5_9PHAE (ER membrane protein complex subunit 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.720e-63
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 0
Query:    5 RQFYSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            RQFYSSENIAHNKKVLEYCRTSLCAVGG+VSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY
Sbjct:   24 RQFYSSENIAHNKKVLEYCRTSLCAVGGIVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 127          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A835YLI1_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.100e-24
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    7 FYSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGK--GKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            F +++N+ HN K++  CRTSLCAV G+ +GILG TG +GL  YLI Y  VSL+L+ KMG  D S YTA K    +A F   G+   ++T+ILFWTLAY LVY+Y
Sbjct:   18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGF-DRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A2K1IUJ4_PHYPA (ER membrane protein complex subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IUJ4_PHYPA)

HSP 1 Score: 69.3 bits (168), Expect = 7.380e-13
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            YS EN+  N +++ Y RT L  VGGV++G+LGLTG+ G   Y ++ ++ S+ +  K    DV  Y     ++    F G+G   L++ILFWT AY +V+I+
Sbjct:   32 YSQENVQLNMRMIYYSRTFLSIVGGVIAGVLGLTGISGFLCYFLIMMLASVGVAAK-AKFDVHSYFDSWNRIL---FDGIGQGLLSFILFWTFAYDIVHIF 128          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A6A0H502_HYAAZ (ER membrane protein complex subunit 6 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H502_HYAAZ)

HSP 1 Score: 67.4 bits (163), Expect = 3.050e-12
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            YS   I +N  ++EYCRTS+ A+ G  SGILGLT L G   +L+   V+ L L++K G+     + + K  L      G+ +   TY+LFWT  Y +V++Y
Sbjct:   19 YSEGAIRNNSAIIEYCRTSMAALSGATSGILGLTSLHGFIFFLLAGFVLWLLLLIKAGSQWQQFFVSRKNLLT----SGLTSGLFTYVLFWTFLYGMVHVY 115          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A6P6SSX2_COFAR (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SSX2_COFAR)

HSP 1 Score: 67.4 bits (163), Expect = 3.440e-12
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            + +EN+ +N KV+ Y RT +  +GGVV+GILGLTGL+G   Y ++  + S+ L  K G +  S + +    L    FGG+    ++++LFWT AY +V+I+
Sbjct:   24 FHAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSVGLAAKAGFSIHSYFDSWNKILLDGFFGGL----MSFVLFWTFAYDIVHIF 120          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A068U343_COFCA (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A068U343_COFCA)

HSP 1 Score: 67.4 bits (163), Expect = 8.310e-12
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            +++EN+ +N KV+ Y RT +  +GGVV+GILGLTGL+G   Y ++  + S  L  K G +  S + +    L    FGG+    ++++LFWT AY +V+I+
Sbjct:   64 FNAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSAGLAAKAGFSIHSYFDSWNKILLDGFFGGL----MSFVLFWTFAYDIVHIF 160          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A9P1K8_PICSI (ER membrane protein complex subunit 6 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P1K8_PICSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-11
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            +S+EN+ +N KV  Y RT L  +GGVV+GILGLTGL G   Y I+  V SL ++ K    D+  Y     ++ +    G+    ++++LFWT AY +V+I+
Sbjct:   26 FSAENLQNNMKVTFYSRTFLSIIGGVVAGILGLTGLKGFILYFIIMAVGSLGVITK-AKFDIHEYFDSWNRVIL---DGITGGLMSFVLFWTFAYDIVHIF 122          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A7E6FSV8_OCTVU (ER membrane protein complex subunit 6 n=3 Tax=Octopus TaxID=6643 RepID=A0A7E6FSV8_OCTVU)

HSP 1 Score: 66.6 bits (161), Expect = 1.040e-11
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            YS   + +N  +++YCRTS+ A+GG  +GI+GLT L G   Y I  +++S+ L+VK G+     + + +       FGG+     TYILFWT  Y +V++Y
Sbjct:   42 YSEIAVRNNAAIMDYCRTSMSALGGATAGIMGLTSLHGFIFYFISAILLSVMLMVKAGSRWNKYFVSRRVLFFSGLFGGL----FTYILFWTFLYGMVHVY 138          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: UPI00125E678C (ER membrane protein complex subunit 6 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E678C)

HSP 1 Score: 65.9 bits (159), Expect = 1.370e-11
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAF-GGVGNYALTYILFWTLAYTLVYIY 108
            +S+EN+ +N KV+ Y RT +  +GGV++GILGLTGL+G   Y ++  + S  L+ K     V  Y     ++ +  F GG+    L+++LFWTLAY +V+I+
Sbjct:   24 FSAENMQNNMKVIYYSRTFMSIIGGVIAGILGLTGLMGFIFYFLIMGITSAGLIAK-AKFSVFSYFDNWNRIILDGFLGGL----LSFVLFWTLAYDIVHIF 120          
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: E9G9M4_DAPPU (ER membrane protein complex subunit 6 n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9G9M4_DAPPU)

HSP 1 Score: 65.5 bits (158), Expect = 1.760e-11
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 0
Query:    8 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 108
            +S  +I +N  V+EYCRTS+ A+GG  +GILGLT L G   Y+   + + L L++K G      +T+    L+    GG+    +TY+LFWT  Y +V++Y
Sbjct:   20 FSEGSIRNNAMVVEYCRTSMAALGGGTAGILGLTSLYGFAFYIFCAVSIWLLLLLKAGPHWEKYFTSRSSLLSSGLSGGL----ITYVLFWTFIYGMVHVY 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZV5_9PHAE2.720e-6399.04ER membrane protein complex subunit 6 n=2 Tax=Ecto... [more]
A0A835YLI1_9STRA8.100e-2452.88ER membrane protein complex subunit 6 n=1 Tax=Trib... [more]
A0A2K1IUJ4_PHYPA7.380e-1338.61ER membrane protein complex subunit 6 n=1 Tax=Phys... [more]
A0A6A0H502_HYAAZ3.050e-1238.61ER membrane protein complex subunit 6 n=1 Tax=Hyal... [more]
A0A6P6SSX2_COFAR3.440e-1238.61ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
A0A068U343_COFCA8.310e-1238.61ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
A9P1K8_PICSI1.020e-1139.60ER membrane protein complex subunit 6 n=1 Tax=Pice... [more]
A0A7E6FSV8_OCTVU1.040e-1137.62ER membrane protein complex subunit 6 n=3 Tax=Octo... [more]
UPI00125E678C1.370e-1139.22ER membrane protein complex subunit 6 n=2 Tax=Ipom... [more]
E9G9M4_DAPPU1.760e-1138.61ER membrane protein complex subunit 6 n=2 Tax=Daph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029008Rab5-interacting protein familyPFAMPF07019Rab5ipcoord: 19..102
e-value: 5.3E-13
score: 49.4
IPR008504ER membrane protein complex subunit 6PANTHERPTHR20994UNCHARACTERIZEDcoord: 3..108
NoneNo IPR availablePANTHERPTHR20994:SF0ER MEMBRANE PROTEIN COMPLEX SUBUNIT 6coord: 3..108
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 61..79
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 80..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..60
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 108..108
NoneNo IPR availableTMHMMTMhelixcoord: 80..102
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12039contigEcto-sp13_S_contig12039:1073..2750 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12039.1739.1mRNA_Ecto-sp13_S_contig12039.1739.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12039 1073..2750 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12039.1739.1 ID=prot_Ecto-sp13_S_contig12039.1739.1|Name=mRNA_Ecto-sp13_S_contig12039.1739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
QKKRRQFYSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYL
ILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTL
AYTLVYIY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029008Rab5IP_fam
IPR008504Emc6