mRNA_Ecto-sp13_S_contig6563.17391.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: A0A6H5L227_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L227_9PHAE) HSP 1 Score: 286 bits (731), Expect = 8.240e-89 Identity = 153/170 (90.00%), Postives = 159/170 (93.53%), Query Frame = 1
Query: 4 GLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKLGNYAAATTXXXXXXXKAAVAVVAKRPTQTNRMG 513
GLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSS IS GE+SGKRPPDFD LL+AGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEV+PGGVATLSRL R+GGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKLG+YAAA XXXXXXX A VAKRPT+TNRMG
Sbjct: 195 GLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSIISSGELSGKRPPDFDLLLVAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVVPGGVATLSRLVREGGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKLGDYAAAXXXXXXXXXXXXXAAVAKRPTRTNRMG 364
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: A0A7S4E647_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E647_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.090e-13 Identity = 50/139 (35.97%), Postives = 75/139 (53.96%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKLG 417
+GL TL RD G+GA++ AF+ +++ R GS + + L +AG+ G+ FW VALPLD KT +Q G + G GV L R GGLR +Y+G+ A RG+PGAA++ + + ++LG
Sbjct: 153 RGLGATLLRDVPGVGAYYAAFEAMRRRAVALR-GSPKL-----------ELAELAVAGAGGGVAFWTVALPLDFAKTRLQV-GAEAGSASVAGV--LLDAVRAGGLRRVYVGYASALARGVPGAAVVFSVYGAVHERLG 276
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: M4BE03_HYAAE (MaoC-like domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BE03_HYAAE) HSP 1 Score: 84.0 bits (206), Expect = 1.990e-13 Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKL 414
+GL T+ RD+ G+ +FL +D VK+ + S+S + GE + LL AG+ G+ FW+VALP D K++IQA G K G+ G V++ +RL R+ G+ L+ GW AF RGIP AA+ T A++ L
Sbjct: 480 KGLTTTVIRDATGVAFYFLGYDLVKQRM------STSGTFGETA--------TLLTAGALGGVSFWVVALPFDTVKSLIQADG-KEGKYT-GLVSSTARLVREEGVMQLFRGWQAAFSRGIPSAAMTFWTFDRATKFL 601
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: A0A7R9ZG86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZG86_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 2.140e-12 Identity = 48/135 (35.56%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGGL---RNLYMGWPVAFGRGIPGAAIMLATHT 396
+G VT+ RD LG G FF+ F+ + LA +GS +G ++ +G+ AGL +W +A+PLD KT++Q + A +S + R G L RNL+ GW +AFGRG P AA+ L ++T
Sbjct: 42 RGAGVTVLRDFLGCGGFFVMFEMGRDRLAPV-FGSRDSTG------------TVMASGALAGLGYWALAMPLDTLKTLVQTGAAESARE-----AAVSSVERDGVLLTIRNLFHGWQLAFGRGAPAAAVTLVSYT 158
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: B7FRF3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRF3_PHATC) HSP 1 Score: 77.0 bits (188), Expect = 1.710e-11 Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGG----LRNLYMGWPVAFGRGIPGAAIMLATHTFA 402
+G + +TRD++G G FF +K L R EV P F +L+G AGL FW+ LPLD KT IQ++ +L R++RQ G ++ L+ GW VA+GRGIP AAI ++ ++ A
Sbjct: 271 RGAGMAVTRDAVGCGCFFYTMAWTQKQLTPRN---------EV-----PSFPVTVLSGGMAGLAFWVSILPLDTLKTWIQSSDLTESV---SASESLQRVYRQSGYQGLVQQLFRGWQVAYGRGIPSAAITISVYSMA 391
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: A0A7S1ZJ01_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZJ01_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.030e-11 Identity = 49/136 (36.03%), Postives = 67/136 (49.26%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQG---GLRNLYMGWPVAFGRGIPGAAIMLATHTF 399
+G VT+ RD LG G+FF+ F+ K +A + S F L AG+ AG+ FW+ ALP D TKT+IQ G+ LS + + G + L+ GW VA GRG P AA+ L T+ F
Sbjct: 126 RGAGVTVVRDGLGCGSFFVMFEIGKDFIAPLTSNGARDS-----------FSVTLGAGALAGIGFWVAALPFDTTKTLIQT-----GKFDTFSETVLSSVTQDGVRKTIHRLFRGWQVALGRGAPAAAVTLGTYDF 245
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: A0A7S4MWB5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWB5_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 3.840e-11 Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGGL---RNLYMGWPVAFGRGIPGAAIMLATHT 396
+G VT+ RDSLG G FF+ ++ + LA +GS +G ++ +G+ AG +W A+PLD KT++Q + A +S + R+G L RNL+ GW +AFGRG P AA+ L+++T
Sbjct: 265 RGAGVTVLRDSLGCGGFFVMYELGRDHLAPV-FGSRESTG------------TVMASGALAGWGYWAFAMPLDTLKTLVQTGAARSARE-----AVVSSVEREGALITVRNLFHGWQLAFGRGAPAAAVTLSSYT 381
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: R1DZ96_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZ96_EMIHU) HSP 1 Score: 68.6 bits (166), Expect = 1.740e-10 Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 1
Query: 157 HLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGGLRNLYMGWPVAFGRGIPGAAIMLATH 393
L+LAGS AG+ FW VALPLD K+ IQ+ E P + L+ L G+ +LY GW VAFGRGIPGAAI L H
Sbjct: 28 ELMLAGSCAGVLFWCVALPLDCIKSRIQSQPL---ETSPRR-SWLAALHSIDGVASLYRGWQVAFGRGIPGAAITLTVH 102
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: A0A1Z5JQB7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQB7_FISSO) HSP 1 Score: 72.0 bits (175), Expect = 4.690e-10 Identity = 51/145 (35.17%), Postives = 69/145 (47.59%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKRGEVIPGGVATLSRLFRQGGL----RNLYMGWPVAFGRGIPGAAIMLATHTFASQKLGNY 423
+G L RD LG G FF A ++ L GE P F L +G AGL FWLV LPLD KT +Q++ V +TL +F + G + L+ GW VA+GRGIP AAI ++ ++ +L Y
Sbjct: 204 RGASWALWRDGLGCGLFFCAMHGMQNTLTPP---------GET-----PKFATSLASGGAAGLAFWLVGLPLDTVKTWVQSS--TDWSVRFSAWSTLRDIFSKEGFWGVNKRLFHGWQVAYGRGIPSAAITMSVYSVVYSELERY 332
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Match: A0A7S2K7H8_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K7H8_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.330e-9 Identity = 49/136 (36.03%), Postives = 66/136 (48.53%), Query Frame = 1
Query: 1 QGLRVTLTRDSLGMGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLCFWLVALPLDMTKTVIQAAGRKR-----GEVIPGGVATLSRLFRQGGLRNLYMGWPVAFGRGIPGAAIMLATH 393
+G VT+ RDSLG G FF++++ K+ SS+S D LL+GS AG+ FW+ A PLD KT IQ + E+ GG L LY GW VAFGRG P AA+ + ++
Sbjct: 288 RGAGVTVMRDSLGCGFFFVSYEVAKRFF-------SSVSSFN-------DTIVTLLSGSCAGIGFWVAAAPLDTIKTNIQTGNTQSIRTAWAEITNGGANVL----------KLYSGWQVAFGRGAPAAAVTVYSY 399 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6563.17391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6563.17391.1 >prot_Ecto-sp13_S_contig6563.17391.1 ID=prot_Ecto-sp13_S_contig6563.17391.1|Name=mRNA_Ecto-sp13_S_contig6563.17391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp MGAFFLAFDTVKKALAERRYGSSSISGGEVSGKRPPDFDHLLLAGSTAGLback to top mRNA from alignment at Ecto-sp13_S_contig6563:673..2919- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6563.17391.1 ID=mRNA_Ecto-sp13_S_contig6563.17391.1|Name=mRNA_Ecto-sp13_S_contig6563.17391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2247bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6563:673..2919- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6563:673..2919- >mRNA_Ecto-sp13_S_contig6563.17391.1 ID=mRNA_Ecto-sp13_S_contig6563.17391.1|Name=mRNA_Ecto-sp13_S_contig6563.17391.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6563:673..2919- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |