mRNA_Ecto-sp13_S_contig12039.1739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12039.1739.1
Unique NamemRNA_Ecto-sp13_S_contig12039.1739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A6H5KZV5_9PHAE (ER membrane protein complex subunit 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV5_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.720e-63
Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:   13 RQFYSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            RQFYSSENIAHNKKVLEYCRTSLCAVGG+VSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY
Sbjct:   24 RQFYSSENIAHNKKVLEYCRTSLCAVGGIVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 127
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A835YLI1_9STRA (ER membrane protein complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLI1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.100e-24
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   19 FYSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGK--GKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            F +++N+ HN K++  CRTSLCAV G+ +GILG TG +GL  YLI Y  VSL+L+ KMG  D S YTA K    +A F   G+   ++T+ILFWTLAY LVY+Y
Sbjct:   18 FLNAQNLMHNMKIITACRTSLCAVAGIATGILGCTGSMGLILYLITYATVSLALLAKMGF-DRSDYTAAKKDSGIAGFLLEGLFGLSITFILFWTLAYALVYVY 120
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A2K1IUJ4_PHYPA (ER membrane protein complex subunit 6 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IUJ4_PHYPA)

HSP 1 Score: 69.3 bits (168), Expect = 7.380e-13
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            YS EN+  N +++ Y RT L  VGGV++G+LGLTG+ G   Y ++ ++ S+ +  K    DV  Y     ++    F G+G   L++ILFWT AY +V+I+
Sbjct:   32 YSQENVQLNMRMIYYSRTFLSIVGGVIAGVLGLTGISGFLCYFLIMMLASVGVAAK-AKFDVHSYFDSWNRIL---FDGIGQGLLSFILFWTFAYDIVHIF 128
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A6A0H502_HYAAZ (ER membrane protein complex subunit 6 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H502_HYAAZ)

HSP 1 Score: 67.4 bits (163), Expect = 3.050e-12
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            YS   I +N  ++EYCRTS+ A+ G  SGILGLT L G   +L+   V+ L L++K G+     + + K  L      G+ +   TY+LFWT  Y +V++Y
Sbjct:   19 YSEGAIRNNSAIIEYCRTSMAALSGATSGILGLTSLHGFIFFLLAGFVLWLLLLIKAGSQWQQFFVSRKNLLT----SGLTSGLFTYVLFWTFLYGMVHVY 115
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A6P6SSX2_COFAR (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6SSX2_COFAR)

HSP 1 Score: 67.4 bits (163), Expect = 3.440e-12
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            + +EN+ +N KV+ Y RT +  +GGVV+GILGLTGL+G   Y ++  + S+ L  K G +  S + +    L    FGG+    ++++LFWT AY +V+I+
Sbjct:   24 FHAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSVGLAAKAGFSIHSYFDSWNKILLDGFFGGL----MSFVLFWTFAYDIVHIF 120
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A068U343_COFCA (ER membrane protein complex subunit 6 n=2 Tax=Coffea TaxID=13442 RepID=A0A068U343_COFCA)

HSP 1 Score: 67.4 bits (163), Expect = 8.310e-12
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            +++EN+ +N KV+ Y RT +  +GGVV+GILGLTGL+G   Y ++  + S  L  K G +  S + +    L    FGG+    ++++LFWT AY +V+I+
Sbjct:   64 FNAENMQNNAKVMYYSRTFMSIIGGVVAGILGLTGLMGFVFYFLIMGITSAGLAAKAGFSIHSYFDSWNKILLDGFFGGL----MSFVLFWTFAYDIVHIF 160
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A9P1K8_PICSI (ER membrane protein complex subunit 6 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P1K8_PICSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-11
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            +S+EN+ +N KV  Y RT L  +GGVV+GILGLTGL G   Y I+  V SL ++ K    D+  Y     ++ +    G+    ++++LFWT AY +V+I+
Sbjct:   26 FSAENLQNNMKVTFYSRTFLSIIGGVVAGILGLTGLKGFILYFIIMAVGSLGVITK-AKFDIHEYFDSWNRVIL---DGITGGLMSFVLFWTFAYDIVHIF 122
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: A0A7E6FSV8_OCTVU (ER membrane protein complex subunit 6 n=3 Tax=Octopus TaxID=6643 RepID=A0A7E6FSV8_OCTVU)

HSP 1 Score: 66.6 bits (161), Expect = 1.040e-11
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            YS   + +N  +++YCRTS+ A+GG  +GI+GLT L G   Y I  +++S+ L+VK G+     + + +       FGG+     TYILFWT  Y +V++Y
Sbjct:   42 YSEIAVRNNAAIMDYCRTSMSALGGATAGIMGLTSLHGFIFYFISAILLSVMLMVKAGSRWNKYFVSRRVLFFSGLFGGL----FTYILFWTFLYGMVHVY 138
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: UPI00125E678C (ER membrane protein complex subunit 6 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125E678C)

HSP 1 Score: 65.9 bits (159), Expect = 1.370e-11
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAF-GGVGNYALTYILFWTLAYTLVYIY 324
            +S+EN+ +N KV+ Y RT +  +GGV++GILGLTGL+G   Y ++  + S  L+ K     V  Y     ++ +  F GG+    L+++LFWTLAY +V+I+
Sbjct:   24 FSAENMQNNMKVIYYSRTFMSIIGGVIAGILGLTGLMGFIFYFLIMGITSAGLIAK-AKFSVFSYFDNWNRIILDGFLGGL----LSFVLFWTLAYDIVHIF 120
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BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Match: E9G9M4_DAPPU (ER membrane protein complex subunit 6 n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9G9M4_DAPPU)

HSP 1 Score: 65.5 bits (158), Expect = 1.760e-11
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:   22 YSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYLILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTLAYTLVYIY 324
            +S  +I +N  V+EYCRTS+ A+GG  +GILGLT L G   Y+   + + L L++K G      +T+    L+    GG+    +TY+LFWT  Y +V++Y
Sbjct:   20 FSEGSIRNNAMVVEYCRTSMAALGGGTAGILGLTSLYGFAFYIFCAVSIWLLLLLKAGPHWEKYFTSRSSLLSSGLSGGL----ITYVLFWTFIYGMVHVY 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12039.1739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZV5_9PHAE2.720e-6399.04ER membrane protein complex subunit 6 n=2 Tax=Ecto... [more]
A0A835YLI1_9STRA8.100e-2452.88ER membrane protein complex subunit 6 n=1 Tax=Trib... [more]
A0A2K1IUJ4_PHYPA7.380e-1338.61ER membrane protein complex subunit 6 n=1 Tax=Phys... [more]
A0A6A0H502_HYAAZ3.050e-1238.61ER membrane protein complex subunit 6 n=1 Tax=Hyal... [more]
A0A6P6SSX2_COFAR3.440e-1238.61ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
A0A068U343_COFCA8.310e-1238.61ER membrane protein complex subunit 6 n=2 Tax=Coff... [more]
A9P1K8_PICSI1.020e-1139.60ER membrane protein complex subunit 6 n=1 Tax=Pice... [more]
A0A7E6FSV8_OCTVU1.040e-1137.62ER membrane protein complex subunit 6 n=3 Tax=Octo... [more]
UPI00125E678C1.370e-1139.22ER membrane protein complex subunit 6 n=2 Tax=Ipom... [more]
E9G9M4_DAPPU1.760e-1138.61ER membrane protein complex subunit 6 n=2 Tax=Daph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12039contigEcto-sp13_S_contig12039:1073..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score75.5
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog112098.XP_008608380.1
Preferred nameEMC6
Model size327
KEGG koko:K04802
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG ModuleM00295
Hectar predicted targeting categorysignal anchor
GOsGO:0000045,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0006914,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0022406,GO:0022607,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031300,GO:0031301,GO:0031984,GO:0032991,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051640,GO:0051641,GO:0061919,GO:0070925,GO:0071840,GO:0072546,GO:0097630,GO:0097631,GO:0098588,GO:0098796,GO:0098827,GO:0140056,GO:1903349,GO:1905037,GO:1990456,GO:1990462
Exons3
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsKOG4455@1,KOG4455@2759
Ec32 ortholog descriptionER membrane protein complex subunit 6
Ec32 orthologEc-23_001080.1
Cds size327
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462639.2367122-CDS-Ecto-sp13_S_contig12039:1072..11781681462639.2367122-CDS-Ecto-sp13_S_contig12039:1072..1178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12039 1073..1178 +
1681462639.2499006-CDS-Ecto-sp13_S_contig12039:1657..17171681462639.2499006-CDS-Ecto-sp13_S_contig12039:1657..1717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12039 1658..1717 +
1681462639.2724643-CDS-Ecto-sp13_S_contig12039:2589..27501681462639.2724643-CDS-Ecto-sp13_S_contig12039:2589..2750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12039 2590..2750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12039.1739.1prot_Ecto-sp13_S_contig12039.1739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12039 1073..2750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12039.1739.1

>prot_Ecto-sp13_S_contig12039.1739.1 ID=prot_Ecto-sp13_S_contig12039.1739.1|Name=mRNA_Ecto-sp13_S_contig12039.1739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
QKKRRQFYSSENIAHNKKVLEYCRTSLCAVGGVVSGILGLTGLVGLFSYL
ILYLVVSLSLVVKMGTTDVSLYTAGKGKLAMFAFGGVGNYALTYILFWTL
AYTLVYIY*
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mRNA from alignment at Ecto-sp13_S_contig12039:1073..2750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12039.1739.1 ID=mRNA_Ecto-sp13_S_contig12039.1739.1|Name=mRNA_Ecto-sp13_S_contig12039.1739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12039:1073..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAAAAAACGCAGACAATTCTACTCCTCCGAGAACATTGCTCACAACAA
GAAGGTGCTGGAGTACTGCCGGACATCGCTGTGCGCCGTCGGGGGGGTCG
TGTCCGGTAAGGCGACAGCGACAAGCTCGAACGTCCGGTACCGTTTCGTA
CCCGATATACAGCGCTCGCTAAAAGCGTCAATTATTTCCCGGAGCAGCTG
CACGCTGGCTGCGGTTGCGATGTCGCCTGAATGGAGAAGCCGCACGCTGG
CTGCGGTTTTGATGTCGACTGACTGTCATCTAAACGCTTGCTGCGGTTTC
GGTATCGACTTACTTGTCAAGTGAACGTTGGCTGCGGTTTTGATGTCGAC
TGACTGTCAGCTGGGCGCTGGCTGTGGTTGTGATGTCAACACCTGAATGC
TTCTCTTGCCCTTATTCCCATGAATGCTTTCCCCCGGTGTTCAGAACCTG
CTTTGTGGCATGCTCGTATTGGATCCAGTGTCAAATTCACCAAGTTGGCT
CCAGATAAAATCCGCGCAGCTGAGACAGTTTTTCATGGCGTTCAAAATCT
AATCCTCCCCCGCCTCTTCGCTCTGTATTCTGCAGGGATCTTGGGGTTGA
CCGGACTGGTCGGGTTATTCTCCTACCTTATCCTTTACCTCGTCGGTAAG
TGCATTCGTCTTTGTCGTTTGTGATCAGCAAGCCGTTAGACGTCGCACTT
AAGGTGAACCCCCCCTTCACTCCGATTCTTGCATTGAACCTTACCGGTAT
TAGTTTGTTTCGCCGGTGTGGTTCGGCCTGCCTTTCGCTCACCGTCTCTT
CTTGAAGCTACAAAAAATCAAGGCAGTTGCTCCGCCGTAGAGCCTCGGAA
CAGGTCCAATGTTTTGAATGTGCGACGATGCTGCAAATCACATGAACCGC
CGCTCACGCCGTTTGGTTAGCATAGCACCTTGAGGGTGGCACCATGACTT
GTTGGGTTGGCGTACAAGCTGATGTTCCTGCTCATGCGACAGCAGTAGTG
TCGAGCTTAGGCATTTTTTACGAAGAGCGTTCGGTACTCGGCGTACAACT
GTAGTAGTAGTCTCCAAAGCCGAAACACGTGTTTCTTGTCCAGTATGGCT
GAGTCTGGTGAAACATCCATTTCTCTCTCCACGCAACGAAAGAGTCGCAT
TGCGTCTGGAATACGCATGCCGCGACGACTTTGTGAAAGTCTTGCAAGGA
GTACAACACGTCTGCCTTCACGACATTTTGGTCGCTTTTGATGGTAGCTG
GTGACATTCCGCCGAACGCCCGGAGGAGGAAAGTTTCGTCCGGGACCACG
GGGGAAAATACACGGGCCATAGCTCGACACTCCCTCCACGGTCTTCGCAG
GAGGCATCTAAATCGCCACAGCTTGACACGTCCCTCATGGGCTTCGCAGG
AGAAGTCTAAACCACCTTCTACATTTGCGTGCCCTCGGCTGTTCGCTCGT
TGTGTCGTGTCCCTCGGCGTGTTGCGCTTCGACCGTCCGTCTGCCCGCCG
GACGACCCCCGCGACAGTTTCTTTGAGCTTGGTGGTGAAAATGGGCACCA
CGGACGTGTCTCTGTACACGGCGGGGAAGGGGAAGCTCGCGATGTTCGCC
TTCGGAGGGGTGGGCAACTACGCGTTGACGTACATCCTGTTCTGGACACT
GGCGTACACGTTAGTCTACATCTACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12039:1073..2750+

>mRNA_Ecto-sp13_S_contig12039.1739.1 ID=mRNA_Ecto-sp13_S_contig12039.1739.1|Name=mRNA_Ecto-sp13_S_contig12039.1739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12039:1073..2750+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAAAAAACGCAGACAATTCTACTCCTCCGAGAACATTGCTCACAACAA
GAAGGTGCTGGAGTACTGCCGGACATCGCTGTGCGCCGTCGGGGGGGTCG
TGTCCGGGATCTTGGGGTTGACCGGACTGGTCGGGTTATTCTCCTACCTT
ATCCTTTACCTCGTCGTTTCTTTGAGCTTGGTGGTGAAAATGGGCACCAC
GGACGTGTCTCTGTACACGGCGGGGAAGGGGAAGCTCGCGATGTTCGCCT
TCGGAGGGGTGGGCAACTACGCGTTGACGTACATCCTGTTCTGGACACTG
GCGTACACGTTAGTCTACATCTACTAG
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