mRNA_Ecto-sp13_S_contig6562.17390.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6562.17390.1
Unique NamemRNA_Ecto-sp13_S_contig6562.17390.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6562.17390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6562contigEcto-sp13_S_contig6562:5126..5734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size609
Hectar predicted targeting categorysignal peptide
Exons1
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463904.6306942-UTR-Ecto-sp13_S_contig6562:5125..53141681463904.6306942-UTR-Ecto-sp13_S_contig6562:5125..5314Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6562 5126..5314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463904.6421583-CDS-Ecto-sp13_S_contig6562:5314..57341681463904.6421583-CDS-Ecto-sp13_S_contig6562:5314..5734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6562 5315..5734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6562.17390.1prot_Ecto-sp13_S_contig6562.17390.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6562 5315..5734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6562.17390.1

>prot_Ecto-sp13_S_contig6562.17390.1 ID=prot_Ecto-sp13_S_contig6562.17390.1|Name=mRNA_Ecto-sp13_S_contig6562.17390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MHHTACTAVVALGLLKTNTKALCVDWNFCRSAAIGGIITNCRHTRMSQVH
VSTLPPSSALYPRLFQAFSLKTMAPPPLPFLLLREPSTSTTTRWPRTLTL
TSALAHVQLPTLHMHIRYGRTEFDVRRCPSPSHSPSTRA*
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mRNA from alignment at Ecto-sp13_S_contig6562:5126..5734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6562.17390.1 ID=mRNA_Ecto-sp13_S_contig6562.17390.1|Name=mRNA_Ecto-sp13_S_contig6562.17390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6562:5126..5734+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTTCTTGCTCATCGGCTTCACGCCCCCTCATCTTCCTTCCCACTCTTT
CTCCTCTAGAATAGAAAACGAGACAATGACGACCATGAACTTCCATTTTC
TGTTGTTCATGTGCTAATATGAAAGAAAGCGCACTGCATCTCACAAACAA
TCGGGTGTGGCGAAGGGTCGCGCTAAATGGGAGAGATGGATGCATCACAC
CGCGTGTACTGCTGTCGTGGCCCTTGGTCTGCTGAAAACCAACACGAAAG
CGCTATGCGTAGACTGGAATTTTTGTCGGTCAGCCGCTATCGGTGGAATC
ATCACAAACTGTCGACACACAAGGATGAGCCAGGTTCATGTCTCTACCCT
CCCTCCGTCTTCTGCCCTGTATCCTAGGCTCTTTCAAGCATTTTCCCTCA
AGACTATGGCGCCACCACCCCTTCCTTTTCTTTTGCTACGAGAACCATCC
ACATCAACAACCACGAGATGGCCTCGAACGTTGACCCTCACCTCCGCCCT
CGCGCATGTTCAACTCCCAACCCTCCACATGCACATTCGATACGGTAGGA
CAGAATTCGACGTTCGACGTTGTCCCTCCCCCTCCCACTCTCCCTCCACC
CGTGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6562:5126..5734+

>mRNA_Ecto-sp13_S_contig6562.17390.1 ID=mRNA_Ecto-sp13_S_contig6562.17390.1|Name=mRNA_Ecto-sp13_S_contig6562.17390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6562:5126..5734+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCACACCGCGTGTACTGCTGTCGTGGCCCTTGGTCTGCTGAAAAC
CAACACGAAAGCGCTATGCGTAGACTGGAATTTTTGTCGGTCAGCCGCTA
TCGGTGGAATCATCACAAACTGTCGACACACAAGGATGAGCCAGGTTCAT
GTCTCTACCCTCCCTCCGTCTTCTGCCCTGTATCCTAGGCTCTTTCAAGC
ATTTTCCCTCAAGACTATGGCGCCACCACCCCTTCCTTTTCTTTTGCTAC
GAGAACCATCCACATCAACAACCACGAGATGGCCTCGAACGTTGACCCTC
ACCTCCGCCCTCGCGCATGTTCAACTCCCAACCCTCCACATGCACATTCG
ATACGGTAGGACAGAATTCGACGTTCGACGTTGTCCCTCCCCCTCCCACT
CTCCCTCCACCCGTGCGTAA
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