prot_Ecto-sp13_S_contig6557.17382.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6557.17382.1
Unique Name	prot_Ecto-sp13_S_contig6557.17382.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	729

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6557.17382.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 540 bits (1390), Expect = 7.850e-167
Identity = 554/702 (78.92%), Postives = 559/702 (79.63%), Query Frame = 0

Query:    1 MTGDLTGAEILHREALSSMERTLSQDDPRIAEVLFNLSAVVGAQRGRLGETENILRXXXXXXXXXXXXXXXXXXXXXXKLHDIIRARDAVSICHSN-SHSSSDRIVISXXXXXXXXXXXXXXXXXXXXXSS-YNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSVPNSRGRNGFFASGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEDRSIHRGGSGFGSFSGRSSGAXXXXXXXXXXXXXXXXXXXXXXXLAGIGKDGAIPEEDIGRVSSEAGGPQQPPGGEGVDXXXXXXXSHKDDGMQGGIRIGSRFASAPSMRRRRSSGGSAYRRGHMASFFEMYSKGNSRHRRGDSSSSSICSLDSPAEDSGGANRGNKKGISPVQRNSRRHGGRRAGSTPVAGGGRGGSSYAKWKSSSSGXXRLRRGXXXXXXXXXXXXXXXXXXXXX-TVHSTRKSRGAERRSRKPPMSYPAATSERVLRNNSSRVVGGSGGXXXXXXXXXXXXXXXXXXGGGVRTXXXXXXXXXXXXXXXXKSGLSLRRSSRPASRAAEQEEKGSGNAAPSDSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGDTSDTSVAGGEVSSLHGDEAPSIPGGGVYGSRQHCDAFADNSDHSDD-GGGNTNVWSDGVFESSGNSTPGAAGRVRV 698
            MTGDLTGAEILHREALSSME        RIAEVLFNLSAVVGAQRGRLGETENILRXXXXXXXXXXXXXXXXXXXXX KLHDIIRARDAVSICHSN SHS        XXXXXXXXXXXXXXXXXXXXX   YNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSVPNSRGRNGFFASG XXX             XXXXXXXXXXXXX                        XXXXXXXXXXXXXXXXXXXXXX LAGIGKDGAIPEEDIGRVSSEAGGPQQPPGGEGVD XXXXXX  KDDGMQGGIRIG+RFASAPSMRRRRSSGGSAYRRGH+ASFFEMYSKGNSRHRRGDSSSSSICS DSPAEDSGGANRGNKKGISPV+RNSRR G      TPV         YA        XX     XXXXXXXXXXXXXXXXXXXXX TV STRK RGAER+SRK PM Y AATSERVLRNNS RV+GGSGG XXXXXXXXXXXXXXX    GVRT  XXXXXXXXXXXXXX                         N  PSDSYSSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     SGGDTSDTSVAGGEVSSLHGDE PSIPGGGVYGSRQHCDAFADNSDHSDD GGGNTNVWSDGVFESSGNSTPGAAGRVR 
Sbjct: 1044 MTGDLTGAEILHREALSSMEXXXXXXXXRIAEVLFNLSAVVGAQRGRLGETENILRXXXXXXXXXXXXXXXXXXXXXGKLHDIIRARDAVSICHSNNSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSVPNSRGRNGFFASGXXXXGRGPKSRGSPHGFXXXXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXXXXXXXXXXGLAGIGKDGAIPEEDIGRVSSEAGGPQQPPGGEGVDSXXXXXXXRKDDGMQGGIRIGARFASAPSMRRRRSSGGSAYRRGHLASFFEMYSKGNSRHRRGDSSSSSICSFDSPAEDSGGANRGNKKGISPVRRNSRRAGXXXXXXTPVXXXXXXXXXYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVISTRKFRGAERQSRKRPMPYLAATSERVLRNNSGRVIGGSGGVXXXXXXXXXXXXXXXGSARGVRTGPXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXNTTPSDSYSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----SGGDTSDTSVAGGEVSSLHGDEVPSIPGGGVYGSRQHCDAFADNSDHSDDDGGGNTNVWSDGVFESSGNSTPGAAGRVRA 1722

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BLAST of mRNA_Ecto-sp13_S_contig6557.17382.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 1.460e-67
Identity = 313/699 (44.78%), Postives = 315/699 (45.06%), Query Frame = 0

Query:    1 MTGDLTGAEILHREALSSMERTLSQDDPRIAEVLFNLSAVVGAQRGRLGETENILRXXXXXXXXXXXXXXXXXXXXXXKLHDIIRARDAVSICHSNSHSSSDRIVISXXXXXXXXXXXXXXXXXXXXXSSYNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSVPNSRGRNGFFASGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEDRSIHRGGSGFGSFSGRSSGAXXXXXXXXXXXXXXXXXXXXXXXLAGIGKDGAIPEEDIGRVSSEAGGPQQPPGGEGVDXXXXXXXSHKDDGMQGGIRIGSRFASAPSMRRRRSSGGSAYRRGHMASFFEMYSKGNSRHRRGDSSSSSICSLDSPAEDSGGANRGNKKGISPVQRNSRRHGGRRAGSTPVAGGGRGGSSYAKWKSSSSGXXRLRRGXXXXXXXXXXXXXXXXXXXXXTVHSTRKSRGAERRSRKPPMSYPAATSERVLRNNSSRVVGGSGGXXXXXXXXXXXXXXXXXXGGGVRTXXXXXXXXXXXXXXXXKSGLSLRRSSRPASRAAEQEEKGSGNAAPSDSYSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGDTSDTSVAGGEVSSLHGDEAPSIPGGGVYGSRQHCDAFADNSDHSDDGGGNTNVWSDGVFESSGNSTPGAAGRVRVA 699
            MTGDLTGAEILHRE                  VLFNLSAVVGAQRGRLGETENILR                      KLHDIIR                                                                FDSVTSAGGSSLFGSVPNSRGRNGFFASGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG E RSIHRGGSGFGSFSGRSS  XXXXXXXXXXXXXXXXXXXXXX LAGIGKDGAIPEEDIGRVSSEAG            XXXXXXX    DGMQGGIRIG  FASAP M       GSAYRRGH+ASFFEMYSKGNSRH    +SSSS                                                                                                                                                                                                                                                   XXXXXXXXXXXXXXXXXSGGDTSDTSVAGGEVSSLHGDEAPSIPGG VYGSRQHCDAFADNSDHSDDGGGNTNVWSDGVFESSGNSTPGAAGRVR A
Sbjct:  702 MTGDLTGAEILHREXXXXXXXXXXXXXXXXXXVLFNLSAVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIR----------------------------------------------------------------FDSVTSAGGSSLFGSVPNSRGRNGFFASGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-EGRSIHRGGSGFGSFSGRSSXXXXXXXXXXXXXXXXXXXXXXXXGLAGIGKDGAIPEEDIGRVSSEAGXXXXXXXXXXX-XXXXXXXXXXXDGMQGGIRIGPWFASAPPMXXXXXXXGSAYRRGHLASFFEMYSKGNSRHSGDGTSSSSXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXSGGDTSDTSVAGGEVSSLHGDEAPSIPGGRVYGSRQHCDAFADNSDHSDDGGGNTNVWSDGVFESSGNSTPGAAGRVRAA 1095

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6557.17382.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6557.17382.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LDX5_9PHAE	7.850e-167	78.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LQY7_ECTSI	1.460e-67	44.78	TPR repeat-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..90 e-value: 1.6E-15 score: 58.9
None	No IPR available	PFAM	PF13374	TPR_10	coord: 43..72 e-value: 1.5E-6 score: 27.8
None	No IPR available	PANTHER	PTHR45783	FAMILY NOT NAMED	coord: 8..85
None	No IPR available	PANTHER	PTHR45783:SF3	KINESIN LIGHT CHAIN	coord: 8..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6557	contig	Ecto-sp13_S_contig6557:5143..8113 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6557.17382.1	mRNA_Ecto-sp13_S_contig6557.17382.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6557 3572..8134 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6557.17382.1 ID=prot_Ecto-sp13_S_contig6557.17382.1|Name=mRNA_Ecto-sp13_S_contig6557.17382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=729bp
MTGDLTGAEILHREALSSMERTLSQDDPRIAEVLFNLSAVVGAQRGRLGE
TENILRRCLEAQERLHGPDHPEVALVLSKLHDIIRARDAVSICHSNSHSS
SDRIVISSHHVSSPVNTNNHTAGGGGPPSSYNPLTASRRNGMSPSSWWEF
DSVTSAGGSSLFGSVPNSRGRNGFFASGGGGRGPNPRVSPHGFGSGSGDG
KAAVAAAAGGEDRSIHRGGSGFGSFSGRSSGAGGGGRGGSGVRRRRSAGG
GGGGGLAGIGKDGAIPEEDIGRVSSEAGGPQQPPGGEGVDSAAPPPSSHK
DDGMQGGIRIGSRFASAPSMRRRRSSGGSAYRRGHMASFFEMYSKGNSRH
RRGDSSSSSICSLDSPAEDSGGANRGNKKGISPVQRNSRRHGGRRAGSTP
VAGGGRGGSSYAKWKSSSSGSSRLRRGRAGTGSSEISGRGGSGGGAGGTV
HSTRKSRGAERRSRKPPMSYPAATSERVLRNNSSRVVGGSGGVSGSGGSG
GSSGGVGGGRGGGVRTGSGGCKGSGGSGGSSGKSGLSLRRSSRPASRAAE
QEEKGSGNAAPSDSYSSSGSFSSSSSFSSSSSCSYTSSDSGDGTSSSSFS
SSSLWSSSTVFSGSRPTSGSGGDTSDTSVAGGEVSSLHGDEAPSIPGGGV
YGSRQHCDAFADNSDHSDDGGGNTNVWSDGVFESSGNSTPGAAGRVRVAA
AGAAAAAAAASPSRDGTPARPPPRPPLL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf