mRNA_Ecto-sp13_S_contig6553.17377.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6553.17377.1
Unique NamemRNA_Ecto-sp13_S_contig6553.17377.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6553.17377.1 vs. uniprot
Match: D7G0H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H7_ECTSI)

HSP 1 Score: 721 bits (1860), Expect = 2.360e-258
Identity = 375/386 (97.15%), Postives = 378/386 (97.93%), Query Frame = 1 
Query:    1 MALPKSRSNTRISVLTGTQKKSPAKVGGGSSSNESTRLYHLASAGTGGAPGGRRITLGRNVPLGGGAXXXXXYGTYQPLRPLSNPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRWGAHRGTAEAEYDESPQWLVFSPFWVGDGLGLLVLVRVMAKVTNIRFVTPARNRGARRGVPRSRSTGSLNDLSGPGSNSGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVIAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANSSDDADGASGGLQSYPWLECLAPLWAVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFALLLAALAGSTVAEMLLTGDHR 1158
            MALPKSRSNTRISVLTGTQKKSPAKVGGGSSSNESTRLYHLASAGTGGAPGGRR TLGRNVPLGGGAXXXXXYGTYQPLRPLSNPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRWGAHRGTAE EYDESPQWLVFSPFWVGDGL LLVLVRVMAKVTNIRFVTPAR+RGARRG  RSRSTGSLNDLSG GSN+GGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLV+AAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANS DDADGASGGLQSYPWLECLAPLW VDLLYAGVAGYVAANTMAGRFVMAPTQGLCFALLLAALAGSTVAEMLLTGDHR
Sbjct:    1 MALPKSRSNTRISVLTGTQKKSPAKVGGGSSSNESTRLYHLASAGTGGAPGGRRRTLGRNVPLGGGAXXXXXYGTYQPLRPLSNPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRWGAHRGTAEPEYDESPQWLVFSPFWVGDGLALLVLVRVMAKVTNIRFVTPARSRGARRGDARSRSTGSLNDLSGHGSNAGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVVAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANSGDDADGASGGLQSYPWLECLAPLWVVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFALLLAALAGSTVAEMLLTGDHR 386
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BLAST of mRNA_Ecto-sp13_S_contig6553.17377.1 vs. uniprot
Match: A0A6H5L389_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L389_9PHAE)

HSP 1 Score: 699 bits (1803), Expect = 8.250e-251
Identity = 367/386 (95.08%), Postives = 372/386 (96.37%), Query Frame = 1 
Query:    1 MALPKSRSNTRISVLTGTQKKSPAKVGGGSSSNESTRLYHLASAGTGGAPGGRRITLGRNVPLGGGAXXXXXYGTYQPLRPLSNPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRWGAHRGTAEAEYDESPQWLVFSPFWVGDGLGLLVLVRVMAKVTNIRFVTPARNRGARRGVPRSRSTGSLNDLSGPGSNSGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVIAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANSSDDADGASGGLQSYPWLECLAPLWAVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFALLLAALAGSTVAEMLLTGDHR 1158
            MALPKSRSNTRISVLTGT KKSPAKVGGGSS NESTRLYHLASAGTGGAPGGRR TLG+NVPLGGGAXXXXX GTYQPL+PLSNPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRWGAHR TAE EYDESPQWLVFSPFWVGDGL LLVLVRVMAKVTNIRFVTP R+RGARRGV RSRSTGSLNDLSGPGS++GGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVIAAPLLLVEAFFLLRVVLIRT GWLSGLTWLLLFSLTILVALRSGANS DDADGASGGLQSYPW ECLAPLWAVDLLYAGVAGYVAANTMAGRFVMAPTQGLCF LLLAAL GSTVAEMLLTGDHR
Sbjct:    1 MALPKSRSNTRISVLTGTHKKSPAKVGGGSS-NESTRLYHLASAGTGGAPGGRRRTLGQNVPLGGGAXXXXXXGTYQPLQPLSNPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRWGAHRLTAEPEYDESPQWLVFSPFWVGDGLALLVLVRVMAKVTNIRFVTPTRSRGARRGVARSRSTGSLNDLSGPGSSAGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVIAAPLLLVEAFFLLRVVLIRTCGWLSGLTWLLLFSLTILVALRSGANSGDDADGASGGLQSYPWRECLAPLWAVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFTLLLAALVGSTVAEMLLTGDHR 385
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BLAST of mRNA_Ecto-sp13_S_contig6553.17377.1 vs. uniprot
Match: A0A397CGU1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CGU1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.370e-6
Identity = 60/246 (24.39%), Postives = 103/246 (41.87%), Query Frame = 1 
Query:  406 WLVFSPFWVGDGLGLLVLVRVMAKVTNIRFVTPARNRGARRGVPRSRSTGSLNDLSGPGSNSGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVIAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANSSDDADGASGGLQSYPWLECLAPLWAVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFALLLAALAGSTVAEMLL 1143
            W+VF PFWV +      LV + A V +IR  T  R                  D+              ++  P+     PLL++++     +  +  +    +V  C      +D        V  AP++++E  +++R +L ++   L G++W+LLF+ T+L+A     NS   A   S      PW+   APL+ + L+  G    V     AG + +  TQ    AL   AL  +T  +++L
Sbjct:   86 WVVFLPFWVAN------LVMLGAHVLSIRAATELRQWAE-------------TDM--------------MSNEPL----LPLLRKILLLYAVSMPLCFLLFWAEVAFCAILSDSSDISVY----VAYAPIMIIEVGYVVRYLLCKSRTTLPGVSWILLFTFTLLLA----HNSDIAAKSTSANSAGLPWVAVFAPLFVLQLVLFGSLAVVLYMQAAGLYRLNSTQVRATALYSIALVAATTGQIML 286
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BLAST of mRNA_Ecto-sp13_S_contig6553.17377.1 vs. uniprot
Match: W4GMW0_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMW0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.900e-6
Identity = 61/246 (24.80%), Postives = 103/246 (41.87%), Query Frame = 1 
Query:  406 WLVFSPFWVGDGLGLLVLVRVMAKVTNIRFVTPARNRGARRGVPRSRSTGSLNDLSGPGSNSGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVIAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANSSDDADGASGGLQSYPWLECLAPLWAVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFALLLAALAGSTVAEMLL 1143
            W+VF PFWV +      LV + A V +IR  T  R                  D+              ++  P+     PLL++++     +  +  +    +V  C      +D        V  APL+++E  +++R +L ++   L G++W+LLF+ T+L+A     NS   A   S      PW+   APL+ + L+  G    V     AG + +  TQ    AL   AL  +T  +++L
Sbjct:  114 WVVFLPFWVAN------LVMLGAHVLSIRAATELRQWAE-------------TDM--------------MSNEPL----LPLLRKILLLYAVSMPLCFLLFWAEVAFCAILSDSSDISVY----VAYAPLMIIEVGYVVRYLLCKSRTTLPGVSWILLFTFTLLLA----HNSDIAAKPTSANSAGLPWVAVFAPLFVLQLVLFGSLAVVLYMQAAGLYRLNSTQVRATALYSIALVAATTGQIML 314
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6553.17377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0H7_ECTSI2.360e-25897.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L389_9PHAE8.250e-25195.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397CGU1_9STRA5.370e-624.39Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4GMW0_9STRA7.900e-624.80Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6553contigEcto-sp13_S_contig6553:520..2089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score65.9
Seed ortholog evalue4.9e-08
Seed eggNOG ortholog157072.XP_008873337.1
Model size1158
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2934U@1,2RA1S@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002360.1
Cds size1158
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463903.5860105-CDS-Ecto-sp13_S_contig6553:519..8111681463903.5860105-CDS-Ecto-sp13_S_contig6553:519..811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6553 520..811 -
1681463903.5965333-CDS-Ecto-sp13_S_contig6553:1223..20891681463903.5965333-CDS-Ecto-sp13_S_contig6553:1223..2089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6553 1224..2089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6553.17377.1prot_Ecto-sp13_S_contig6553.17377.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6553 520..2089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6553.17377.1

>prot_Ecto-sp13_S_contig6553.17377.1 ID=prot_Ecto-sp13_S_contig6553.17377.1|Name=mRNA_Ecto-sp13_S_contig6553.17377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=386bp
MALPKSRSNTRISVLTGTQKKSPAKVGGGSSSNESTRLYHLASAGTGGAP
GGRRITLGRNVPLGGGAGGGGGYGTYQPLRPLSNPVEDCLRAGAAGLGWC
LLSWFTGVVLLVLEYAKRWGAHRGTAEAEYDESPQWLVFSPFWVGDGLGL
LVLVRVMAKVTNIRFVTPARNRGARRGVPRSRSTGSLNDLSGPGSNSGGG
GGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREA
DAPGVPRPLVIAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILV
ALRSGANSSDDADGASGGLQSYPWLECLAPLWAVDLLYAGVAGYVAANTM
AGRFVMAPTQGLCFALLLAALAGSTVAEMLLTGDHR
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mRNA from alignment at Ecto-sp13_S_contig6553:520..2089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6553.17377.1 ID=mRNA_Ecto-sp13_S_contig6553.17377.1|Name=mRNA_Ecto-sp13_S_contig6553.17377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6553:520..2089- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATTGCCCAAGTCCCGATCCAACACACGCATCAGTGTTCTGACCGG
GACGCAGAAGAAGTCTCCGGCGAAGGTAGGAGGAGGCAGCAGCAGCAATG
AATCCACGAGGCTGTACCACCTCGCGTCGGCCGGCACCGGTGGCGCGCCT
GGCGGGAGGCGAATAACGCTCGGCCGGAACGTTCCGCTCGGGGGCGGAGC
AGGGGGAGGGGGCGGCTACGGCACCTACCAGCCCCTGCGACCTCTCTCGA
ACCCGGTGGAGGATTGCCTTCGCGCCGGAGCCGCGGGGCTGGGATGGTGC
CTCCTGTCCTGGTTCACGGGCGTCGTGCTCCTGGTGCTCGAGTACGCGAA
GAGGTGGGGTGCTCACAGAGGGACCGCGGAGGCGGAGTACGACGAATCCC
CCCAGTGGCTCGTCTTCTCGCCCTTCTGGGTCGGGGACGGGCTGGGTCTG
CTCGTGCTTGTGCGAGTCATGGCCAAGGTCACAAACATAAGATTCGTGAC
TCCCGCGCGTAACAGAGGCGCAAGGCGCGGCGTCCCGCGCTCTCGCTCGA
CGGGAAGCCTCAACGATCTTTCGGGCCCCGGAAGCAACTCTGGCGGCGGC
GGCGGCAGCCGACTCGCGTGCGCGCCGATAACGCTGGACTACTTTCCGTT
GCTACAGAGAGTCATCGCCACCTCGGTCGGGGCGTTCCTCGTACTGGTCG
TCTTCACGACGCAGCAGGTGCTGATCTGCCTGCGGTGGGGAAGGGAGGCA
GACGCACCGGGCGTGCCGCGACCGCTGGTGATCGCGGCGCCGCTGCTGCT
GGTCGAAGCGTTTTTCTTGTTGAGGGTGGTGCTCATCCGCACGTACGGGT
GGCTGTCCGGACTAACGTGAGTCAAGATCTATGTAGATTTCCTCCTGTAG
TACATAGCAGGAAGTTGGTTGTCGACAGCACGACGGGTAGGTACAAGTTA
CGAATGATTTTTAGGTAGCAAGATTCGCGAAAACTTCCACCTGCTGGCTG
CTGCTTGTTTCCCGTTCATTGGTGTCCTGTGGCTCGCTGGTCCGCGACGA
AATTGCAGGTGCACTAGTTTTTGCTCGCACACCAGGAGACCGTCTTGTGT
ACCACAGCTGTTGTCGACCGTCTGCATACAATTTTTTAGACACATATGCA
TGAAAGACACTTTCGAACAAGCACTTACCACCTCACGACACGGGCCTGCA
TTCCCAACTGTGCCCCCCCCCCCCTCCACCCCTCCCCGCGCGCGCATTCG
CCCTCCGCGCCCAACGCCCCGCCTTCAGCTGGCTGCTGCTCTTTTCGTTG
ACGATATTGGTGGCCCTAAGAAGCGGCGCCAACTCTAGCGACGACGCCGA
CGGTGCGTCCGGCGGGCTGCAATCGTACCCGTGGCTCGAGTGCCTGGCGC
CGCTGTGGGCGGTGGACCTCCTGTACGCCGGGGTGGCGGGCTACGTGGCG
GCCAACACAATGGCGGGGAGGTTCGTGATGGCGCCGACGCAGGGGCTGTG
CTTCGCCCTCCTGCTGGCCGCGCTGGCGGGGTCGACGGTGGCGGAGATGC
TCTTGACTGGAGACCACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6553:520..2089-

>mRNA_Ecto-sp13_S_contig6553.17377.1 ID=mRNA_Ecto-sp13_S_contig6553.17377.1|Name=mRNA_Ecto-sp13_S_contig6553.17377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6553:520..2089- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATTGCCCAAGTCCCGATCCAACACACGCATCAGTGTTCTGACCGG
GACGCAGAAGAAGTCTCCGGCGAAGGTAGGAGGAGGCAGCAGCAGCAATG
AATCCACGAGGCTGTACCACCTCGCGTCGGCCGGCACCGGTGGCGCGCCT
GGCGGGAGGCGAATAACGCTCGGCCGGAACGTTCCGCTCGGGGGCGGAGC
AGGGGGAGGGGGCGGCTACGGCACCTACCAGCCCCTGCGACCTCTCTCGA
ACCCGGTGGAGGATTGCCTTCGCGCCGGAGCCGCGGGGCTGGGATGGTGC
CTCCTGTCCTGGTTCACGGGCGTCGTGCTCCTGGTGCTCGAGTACGCGAA
GAGGTGGGGTGCTCACAGAGGGACCGCGGAGGCGGAGTACGACGAATCCC
CCCAGTGGCTCGTCTTCTCGCCCTTCTGGGTCGGGGACGGGCTGGGTCTG
CTCGTGCTTGTGCGAGTCATGGCCAAGGTCACAAACATAAGATTCGTGAC
TCCCGCGCGTAACAGAGGCGCAAGGCGCGGCGTCCCGCGCTCTCGCTCGA
CGGGAAGCCTCAACGATCTTTCGGGCCCCGGAAGCAACTCTGGCGGCGGC
GGCGGCAGCCGACTCGCGTGCGCGCCGATAACGCTGGACTACTTTCCGTT
GCTACAGAGAGTCATCGCCACCTCGGTCGGGGCGTTCCTCGTACTGGTCG
TCTTCACGACGCAGCAGGTGCTGATCTGCCTGCGGTGGGGAAGGGAGGCA
GACGCACCGGGCGTGCCGCGACCGCTGGTGATCGCGGCGCCGCTGCTGCT
GGTCGAAGCGTTTTTCTTGTTGAGGGTGGTGCTCATCCGCACGTACGGGT
GGCTGTCCGGACTAACCTGGCTGCTGCTCTTTTCGTTGACGATATTGGTG
GCCCTAAGAAGCGGCGCCAACTCTAGCGACGACGCCGACGGTGCGTCCGG
CGGGCTGCAATCGTACCCGTGGCTCGAGTGCCTGGCGCCGCTGTGGGCGG
TGGACCTCCTGTACGCCGGGGTGGCGGGCTACGTGGCGGCCAACACAATG
GCGGGGAGGTTCGTGATGGCGCCGACGCAGGGGCTGTGCTTCGCCCTCCT
GCTGGCCGCGCTGGCGGGGTCGACGGTGGCGGAGATGCTCTTGACTGGAG
ACCACAGG
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