prot_Ecto-sp13_S_contig6551.17372.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6551.17372.1
Unique Nameprot_Ecto-sp13_S_contig6551.17372.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length136
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6551.17372.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 8.000e-43
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 0 
Query:   45 EMMRKAAFRTPAEGLTRLGAILRVPSMAVLASTIQLATALASMSRRLERMAAGGESWEAPPNAAPSADSGERPRHPHTSSPPTVEVMRRRHK 136
            EMMR+AAFRTPAEGLTRLGAILRVPSMAVLAS +QLATALASMSRRLERMAAGGESW APPNAAP+ADSGERP+HP TSSPPT EVMRRRHK
Sbjct: 4511 EMMRRAAFRTPAEGLTRLGAILRVPSMAVLASAVQLATALASMSRRLERMAAGGESWGAPPNAAPTADSGERPKHPQTSSPPTAEVMRRRHK 4602
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BLAST of mRNA_Ecto-sp13_S_contig6551.17372.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.090e-42
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0 
Query:   44 AEMMRKAAFRTPAEGLTRLGAILRVPSMAVLASTIQLATALASMSRRLERMAAGGESWEAPPNAAPSADSGERPRHPHTSSPPTVEVMRRRHK 136
            AEMMRKAAFRTPAEGLTRLGAILRVP+MAVLASTIQLATALASMSRRLE+MAAGGESWEAPPNAAP+ADSGE P+HP TSSPPT EVM RRHK
Sbjct: 5070 AEMMRKAAFRTPAEGLTRLGAILRVPAMAVLASTIQLATALASMSRRLEKMAAGGESWEAPPNAAPTADSGECPKHPQTSSPPTAEVMGRRHK 5162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6551.17372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLX0_ECTSI8.000e-4391.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J981_9PHAE1.090e-4291.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..136
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..85
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..63
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6551contigEcto-sp13_S_contig6551:542..1407 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6551.17372.1mRNA_Ecto-sp13_S_contig6551.17372.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6551 541..1407 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6551.17372.1 ID=prot_Ecto-sp13_S_contig6551.17372.1|Name=mRNA_Ecto-sp13_S_contig6551.17372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
DGSKRRSSRSSGMVAAAVASGSAYAPAAAPAVASTSSSSSSSKAEMMRKA
AFRTPAEGLTRLGAILRVPSMAVLASTIQLATALASMSRRLERMAAGGES
WEAPPNAAPSADSGERPRHPHTSSPPTVEVMRRRHK
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