mRNA_Ecto-sp13_S_contig65486.17367.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65486.17367.1
Unique NamemRNA_Ecto-sp13_S_contig65486.17367.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.140e-25
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    4 PLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLRSVLPEV 207
            PL+WWRVKAREYP LA+LARRVLCIPA QA SERVFS AG VVT TR+R+DPE+V LMVFLR+  PE+
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNTPPEL 547          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.810e-20
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLRSVLPEVD 210
            +PL  WR K  EYP+LAALARRVL IP+SQA SERVFS AG  VTPTRSRL  E+VEL+V+LR+V   VD
Sbjct:  482 NPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVD 551          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 82.4 bits (202), Expect = 4.390e-19
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLR 189
             PL+WW+V A  YP+LA+LA+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL+
Sbjct:   22 SPLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 84          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: A0A6S7JH57_PARCT (Zinc finger BED domain-containing 1-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JH57_PARCT)

HSP 1 Score: 79.0 bits (193), Expect = 3.000e-17
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFL 186
            DPLQWW++ A+E P+L  L+RR L I AS + SER+FS AGQV TP R++L PE V+ +VFL
Sbjct:   64 DPLQWWKLNAKELPLLCQLSRRYLAIQASSSPSERLFSKAGQVSTPARAQLKPEKVDKLVFL 125          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: UPI001C04A074 (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04A074)

HSP 1 Score: 82.8 bits (203), Expect = 6.990e-17
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLRSVLPEVD 210
            +PL WW+  A EYP+LA LARR LC+P +   SERVFS AG +VT  RS L P+HV+ ++FL+  L  V+
Sbjct:  552 NPLTWWKAHAGEYPLLACLARRYLCVPGTSVSSERVFSTAGDIVTAQRSCLTPQHVDQLLFLQKNLAVVN 621          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: A0A8B8G1X1_9HEMI (zinc finger BED domain-containing protein 1-like n=1 Tax=Sipha flava TaxID=143950 RepID=A0A8B8G1X1_9HEMI)

HSP 1 Score: 79.3 bits (194), Expect = 7.120e-17
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLRS 192
            +P  WW+ +   YP ++ LA+ +LCIPAS A SERVFS AG ++TP R+R+ P H+  +VFL++
Sbjct:  116 NPCLWWKARENVYPKISVLAKNILCIPASSASSERVFSTAGNIITPKRNRMTPYHLSALVFLKN 179          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: UPI000B933A0F (zinc finger BED domain-containing protein 1-like n=1 Tax=Myzus persicae TaxID=13164 RepID=UPI000B933A0F)

HSP 1 Score: 77.8 bits (190), Expect = 1.020e-16
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLR 189
            DP  WW+     YP LA LA+++LCIPAS A SERVFS AG +++P R+R+ P H+  +VFL+
Sbjct:   69 DPCAWWKDHENIYPTLAVLAKQILCIPASSASSERVFSTAGNILSPKRNRITPCHLSALVFLK 131          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: A0A8C1LHH7_CYPCA (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1LHH7_CYPCA)

HSP 1 Score: 82.0 bits (201), Expect = 1.240e-16
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLRS 192
             PL+WW+V A  YP+LA LA+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL++
Sbjct:  422 SPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLKN 485          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: A0A6S7I354_PARCT (Zinc finger BED domain-containing 1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I354_PARCT)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFL 186
            DPLQWW++ A+E P+L  L+RR L I AS + SER+FS AGQV TP R++L PE V+ +VFL
Sbjct:  144 DPLQWWKLNAKELPLLCQLSRRYLAIQASSSPSERLFSKAGQVSTPARAQLKPEKVDKLVFL 205          
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Match: A0A1A8MVX1_9TELE (BED-type domain-containing protein n=3 Tax=Atherinomorphae TaxID=1489913 RepID=A0A1A8MVX1_9TELE)

HSP 1 Score: 81.6 bits (200), Expect = 1.790e-16
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSRLDPEHVELMVFLR 189
             PL+WW+V A  YP+LA LA+  LCIPA+   SERVFS AG +V+  RS + PEHV+++VFL+
Sbjct:  587 SPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 649          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65486.17367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE1.140e-2576.47Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI2.810e-2068.57Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A1A8CIX7_9TELE4.390e-1955.56Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A6S7JH57_PARCT3.000e-1758.06Zinc finger BED domain-containing 1-like (Fragment... [more]
UPI001C04A0746.990e-1752.86E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanota... [more]
A0A8B8G1X1_9HEMI7.120e-1748.44zinc finger BED domain-containing protein 1-like n... [more]
UPI000B933A0F1.020e-1652.38zinc finger BED domain-containing protein 1-like n... [more]
A0A8C1LHH7_CYPCA1.240e-1654.69Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cy... [more]
A0A6S7I354_PARCT1.750e-1658.06Zinc finger BED domain-containing 1-like n=1 Tax=P... [more]
A0A1A8MVX1_9TELE1.790e-1655.56BED-type domain-containing protein n=3 Tax=Atherin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65486contigEcto-sp13_S_contig65486:31..240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.3
Seed ortholog evalue6.1e-18
Seed eggNOG ortholog2880.D7G5Z0
Model size210
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
Cds size210
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.8273304-CDS-Ecto-sp13_S_contig65486:30..2401681463902.8273304-CDS-Ecto-sp13_S_contig65486:30..240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65486 31..240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65486.17367.1prot_Ecto-sp13_S_contig65486.17367.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65486 31..240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65486.17367.1

>prot_Ecto-sp13_S_contig65486.17367.1 ID=prot_Ecto-sp13_S_contig65486.17367.1|Name=mRNA_Ecto-sp13_S_contig65486.17367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
DPLQWWRVKAREYPMLAALARRVLCIPASQAHSERVFSVAGQVVTPTRSR
LDPEHVELMVFLRSVLPEVD
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mRNA from alignment at Ecto-sp13_S_contig65486:31..240+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65486.17367.1 ID=mRNA_Ecto-sp13_S_contig65486.17367.1|Name=mRNA_Ecto-sp13_S_contig65486.17367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65486:31..240+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCACTGCAGTGGTGGCGTGTTAAGGCGCGGGAATACCCCATGCTGGC CGCACTGGCACGCCGGGTGTTGTGCATTCCCGCGTCCCAAGCGCACTCCG AACGTGTGTTTTCGGTGGCGGGACAAGTCGTAACCCCGACACGTTCTCGG CTCGACCCCGAACATGTAGAGCTCATGGTATTCCTTCGCTCTGTCCTCCC CGAGGTAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65486:31..240+

>mRNA_Ecto-sp13_S_contig65486.17367.1 ID=mRNA_Ecto-sp13_S_contig65486.17367.1|Name=mRNA_Ecto-sp13_S_contig65486.17367.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65486:31..240+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCACTGCAGTGGTGGCGTGTTAAGGCGCGGGAATACCCCATGCTGGC
CGCACTGGCACGCCGGGTGTTGTGCATTCCCGCGTCCCAAGCGCACTCCG
AACGTGTGTTTTCGGTGGCGGGACAAGTCGTAACCCCGACACGTTCTCGG
CTCGACCCCGAACATGTAGAGCTCATGGTATTCCTTCGCTCTGTCCTCCC
CGAGGTAGAC
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