prot_Ecto-sp13_S_contig6541.17357.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6541.17357.1
Unique Nameprot_Ecto-sp13_S_contig6541.17357.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length249
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6541.17357.1 vs. uniprot
Match: A0A6H5K7P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P8_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 2.040e-134
Identity = 227/249 (91.16%), Postives = 230/249 (92.37%), Query Frame = 0 
Query:    1 HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAESGSVVSEISQGSFGGGGXXXNLXXDGFGGDTRRDGAASGASAAISTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGSHGTGLVDPSTAEATATAPPASGHEGGTVGRRPGRGRQSTAVLLRAESGVGAPAAEASW 249
            HAVARGLQSDTWL+GVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVA SGSVVSEISQ SFG   XXX  X + FGG TRR  AAS ASAAI TSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPG HGTGL DPSTAEATATAPPASGHEGGTVGRRPGRGR+STAVLLRA SG GAPAAEA W
Sbjct:  344 HAVARGLQSDTWLVGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAGSGSVVSEISQDSFGXXXXXXXXXHE-FGGATRRGRAASSASAAIPTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGPHGTGLADPSTAEATATAPPASGHEGGTVGRRPGRGRRSTAVLLRAGSGAGAPAAEAPW 591
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BLAST of mRNA_Ecto-sp13_S_contig6541.17357.1 vs. uniprot
Match: D8LBL5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL5_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 2.530e-125
Identity = 215/247 (87.04%), Postives = 216/247 (87.45%), Query Frame = 0 
Query:    1 HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAESGSVVSEISQGSFGGGGXXXNLXXDGFGGDTRRDGAASGASAAISTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGSHGTGLVDPSTAEATATAPPASGHEGGTVGRRPGRGRQSTAVLLRAESGVGAPAAEA 247
            HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVA SGSVVSEISQ SFG   XXX  XX               A AAI TSVQAKTPAERKEEMVREFRRWAGYT CSMR PGS G GL DPST EATATAPPASGHEGGTVGRRPGRGR+STAVLLRAESG GAPAAEA
Sbjct:  314 HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAGSGSVVSEISQDSFGXXXXXXXXXXXXXXXXXXXX-XXXXAIAAIPTSVQAKTPAERKEEMVREFRRWAGYTACSMRRPGSDGIGLADPSTTEATATAPPASGHEGGTVGRRPGRGRRSTAVLLRAESGAGAPAAEA 559
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6541.17357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7P8_9PHAE2.040e-13491.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBL5_ECTSI2.530e-12587.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..75
e-value: 3.3E-7
score: 32.0
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 2..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6541contigEcto-sp13_S_contig6541:2109..5882 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6541.17357.1mRNA_Ecto-sp13_S_contig6541.17357.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6541 2108..5882 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6541.17357.1 ID=prot_Ecto-sp13_S_contig6541.17357.1|Name=mRNA_Ecto-sp13_S_contig6541.17357.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=249bp
HAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNP
EVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLS
PPTRPAAAVAESGSVVSEISQGSFGGGGGGGNLGGDGFGGDTRRDGAASG
ASAAISTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGSHGTGLVDPS
TAEATATAPPASGHEGGTVGRRPGRGRQSTAVLLRAESGVGAPAAEASW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf