mRNA_Ecto-sp13_S_contig6541.17356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6541.17356.1
Unique NamemRNA_Ecto-sp13_S_contig6541.17356.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6541.17356.1 vs. uniprot
Match: A0A6H5K7P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P8_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 1.390e-65
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:    1 GAPSALDVTWDVLDADGYPELTPRRRKELFPVAETAAERPSPPIVRQARAGGGRGGRTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSELVTESSVVAGEGLGREADQG 357
            GAPSALDVTWDVLDADGYPELTPRRRKELFP+AET AERPSPP+ RQAR GGGRGGRTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSE VTESSVVAGEGLGRE DQG
Sbjct:  795 GAPSALDVTWDVLDADGYPELTPRRRKELFPMAETEAERPSPPVARQARGGGGRGGRTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSERVTESSVVAGEGLGREVDQG 913
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BLAST of mRNA_Ecto-sp13_S_contig6541.17356.1 vs. uniprot
Match: D8LBL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL6_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 2.890e-62
Identity = 108/128 (84.38%), Postives = 109/128 (85.16%), Query Frame = 1 
Query:    1 GAPSALDVTWDVLDADGYPELTPRRRKELFPVAETAAERPSPPIVRQARAGGGRGG----------RTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSELVTESSVVAGEGLGREADQ 354
            GAPSALDVTWDVLDADGYPELTPRRRKELFPVAET AERPSPP+ RQAR GG              RTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSE VTESSVV GEGLGREADQ
Sbjct:    2 GAPSALDVTWDVLDADGYPELTPRRRKELFPVAETEAERPSPPVGRQARGGGXXXXXXXXXXXXXXRTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSERVTESSVVTGEGLGREADQ 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6541.17356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7P8_9PHAE1.390e-6594.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBL6_ECTSI2.890e-6284.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6541contigEcto-sp13_S_contig6541:691..1487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size360
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003500.1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463902.1327138-CDS-Ecto-sp13_S_contig6541:691..8171681463902.1327138-CDS-Ecto-sp13_S_contig6541:691..817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6541 692..817 -
1681463902.1511734-CDS-Ecto-sp13_S_contig6541:1256..14871681463902.1511734-CDS-Ecto-sp13_S_contig6541:1256..1487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6541 1257..1487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6541.17356.1prot_Ecto-sp13_S_contig6541.17356.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6541 692..1487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6541.17356.1

>prot_Ecto-sp13_S_contig6541.17356.1 ID=prot_Ecto-sp13_S_contig6541.17356.1|Name=mRNA_Ecto-sp13_S_contig6541.17356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
GAPSALDVTWDVLDADGYPELTPRRRKELFPVAETAAERPSPPIVRQARA
GGGRGGRTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSEL
VTESSVVAGEGLGREADQG
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mRNA from alignment at Ecto-sp13_S_contig6541:691..1487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6541.17356.1 ID=mRNA_Ecto-sp13_S_contig6541.17356.1|Name=mRNA_Ecto-sp13_S_contig6541.17356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=797bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6541:691..1487- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGCCCTCGGCGCTGGACGTGACGTGGGACGTCCTCGACGCCGATGG
CTACCCGGAGCTGACCCCCCGGCGGAGGAAGGAACTCTTCCCGGTGGCGG
AGACGGCGGCCGAGCGGCCTTCGCCGCCGATCGTCAGGCAGGCCCGAGCA
GGTGGTGGCAGGGGCGGGAGGACCGACAGGGTGGTGGACATGCTGGCGTC
GCTGGAGAAGGCCGTCATGGACGTTTGCAAGGTGGGTGGACTGTCTTGTT
TACTGCTGCTGCTTCGCCCCCCTTCGTTGCGTGTGGTTCGGCAGCTGGTT
TCTTGTGGTGTGAGGCGGGATCATCCAGACCCGAGGATGAAGGGGGCGCA
CGAATTTTCCCTCGCCTAAGTGGGGTTCGCAGGATGAGTCGTCAGTGTGG
TCTTCTCTTTTGGTGTCATCAGGCTAACCGTGGACTGCGGGAAGGGTACG
TAGCGTTTGAGGACGTTTGGTGGGAAGCGGTATGGCAGGTCGGCACTGCT
GCTGGCTCTCCTCCAGAAGGCCTCCACATGTGTGTCGTATGAAACATGCG
TGCGACGTGCCGTGCGCACCGACTTGAAAGCAGCGACGAGTGACCGCTGA
AAGGGGGCGCGTTTCTGGCCGCCCACCCCGCCTATTCCGGACGCCCTTCA
TCCATCGATACCGCTTTCAGGACATGTGGAGGCTCGAGGACAAGGTGGAA
GGCTCCGAGCGATACACCGCTAGCCGGGGTTCGGAGCTTGTGACGGAGAG
CTCGGTCGTTGCAGGGGAGGGCTTGGGAAGAGAGGCAGACCAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6541:691..1487-

>mRNA_Ecto-sp13_S_contig6541.17356.1 ID=mRNA_Ecto-sp13_S_contig6541.17356.1|Name=mRNA_Ecto-sp13_S_contig6541.17356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6541:691..1487- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGCCCTCGGCGCTGGACGTGACGTGGGACGTCCTCGACGCCGATGG
CTACCCGGAGCTGACCCCCCGGCGGAGGAAGGAACTCTTCCCGGTGGCGG
AGACGGCGGCCGAGCGGCCTTCGCCGCCGATCGTCAGGCAGGCCCGAGCA
GGTGGTGGCAGGGGCGGGAGGACCGACAGGGTGGTGGACATGCTGGCGTC
GCTGGAGAAGGCCGTCATGGACGTTTGCAAGGACATGTGGAGGCTCGAGG
ACAAGGTGGAAGGCTCCGAGCGATACACCGCTAGCCGGGGTTCGGAGCTT
GTGACGGAGAGCTCGGTCGTTGCAGGGGAGGGCTTGGGAAGAGAGGCAGA
CCAAGGT
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