mRNA_Ecto-sp13_S_contig654.17353.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig654.17353.1
Unique NamemRNA_Ecto-sp13_S_contig654.17353.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 7.640e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD
Sbjct:   32 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 86
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 91.3 bits (225), Expect = 8.960e-23
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:   39 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 93
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-22
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            GFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYLRGV ED+    AD
Sbjct:   34 GFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDEIEDAD 88
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 90.1 bits (222), Expect = 2.060e-22
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            G+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRGV EDE   + D
Sbjct:   32 GYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEED 86
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A804J679_MUSAM (Sm protein F n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A804J679_MUSAM)

HSP 1 Score: 89.7 bits (221), Expect = 2.850e-22
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            G+LVSVD+YMNL L +TEEYVDG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:   32 GYLVSVDSYMNLQLANTEEYVDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 86
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 89.7 bits (221), Expect = 2.920e-22
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            GFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:   31 GFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEEAD 85
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 89.7 bits (221), Expect = 3.090e-22
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            G+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE   +AD
Sbjct:   33 GYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDEDITEAD 87
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A5P1EWT9_ASPOF (Sm protein F n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EWT9_ASPOF)

HSP 1 Score: 89.4 bits (220), Expect = 5.040e-22
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            G+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE    AD
Sbjct:   40 GYLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEIEDAD 94
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BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A803QDU2_CANSA (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A803QDU2_CANSA)

HSP 1 Score: 89.0 bits (219), Expect = 6.070e-22
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDE 147
            GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRGV EDE
Sbjct:   32 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDE 80
[Close]
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Match: A0A2N9FFJ8_FAGSY (Sm protein F n=2 Tax=Fagaceae TaxID=3503 RepID=A0A2N9FFJ8_FAGSY)

HSP 1 Score: 89.0 bits (219), Expect = 6.230e-22
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD 165
            GFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNV+YLRGV EDE   +AD
Sbjct:   33 GFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVIYLRGVPEDEEIEEAD 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig654.17353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI7.640e-32100.00Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7J6WA49_THATH8.960e-2374.55Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A7I8LGH6_SPIIN1.050e-2276.36Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]
A0A176VZF1_MARPO2.060e-2274.55Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
A0A804J679_MUSAM2.850e-2274.55Sm protein F n=10 Tax=Mesangiospermae TaxID=143718... [more]
A0A6P9F5Z8_JUGRE2.920e-2272.73Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A835M2E4_9MAGN3.090e-2272.73Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
A0A5P1EWT9_ASPOF5.040e-2272.73Sm protein F n=1 Tax=Asparagus officinalis TaxID=4... [more]
A0A803QDU2_CANSA6.070e-2279.59Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183... [more]
A0A2N9FFJ8_FAGSY6.230e-2270.91Sm protein F n=2 Tax=Fagaceae TaxID=3503 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig654contigEcto-sp13_S_contig654:21192..21356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score95.9
Seed ortholog evalue5.2e-18
Seed eggNOG ortholog2880.D7FWG1
Preferred nameSNRPF
Model size165
KEGG koko:K11098
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:1990935
Exons1
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsKOG3482@1,KOG3482@2759
Cds size138
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463901.9036496-CDS-Ecto-sp13_S_contig654:21191..213291681463901.9036496-CDS-Ecto-sp13_S_contig654:21191..21329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig654 21192..21329 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463901.9174216-UTR-Ecto-sp13_S_contig654:21329..213561681463901.9174216-UTR-Ecto-sp13_S_contig654:21329..21356Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig654 21330..21356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig654.17353.1prot_Ecto-sp13_S_contig654.17353.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig654 21192..21329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig654.17353.1

>prot_Ecto-sp13_S_contig654.17353.1 ID=prot_Ecto-sp13_S_contig654.17353.1|Name=mRNA_Ecto-sp13_S_contig654.17353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKAD
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mRNA from alignment at Ecto-sp13_S_contig654:21192..21356-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig654.17353.1 ID=mRNA_Ecto-sp13_S_contig654.17353.1|Name=mRNA_Ecto-sp13_S_contig654.17353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig654:21192..21356- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATTTCTTGTGTCGGTCGACACGTACATGAACCTCCTTCTCACATCGAC
GGAGGAGTATGTGGACGGCGAGTTCGCGGGCAACTTGGGAGACGTGCTCA
TCCGCTGTAACAACGTCTTGTACCTTAGGGGGGTAGAAGAGGACGAGGCC
AATGCAAAAGCGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig654:21192..21356-

>mRNA_Ecto-sp13_S_contig654.17353.1 ID=mRNA_Ecto-sp13_S_contig654.17353.1|Name=mRNA_Ecto-sp13_S_contig654.17353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig654:21192..21356- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCTCCTTCTCACATCGACGGAGGAGTATGTGGACGGCGAGTTCGC
GGGCAACTTGGGAGACGTGCTCATCCGCTGTAACAACGTCTTGTACCTTA
GGGGGGTAGAAGAGGACGAGGCCAATGCAAAAGCGGAT
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