mRNA_Ecto-sp13_S_contig65339.17346.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65339.17346.1
Unique NamemRNA_Ecto-sp13_S_contig65339.17346.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65339.17346.1 vs. uniprot
Match: A0A6H5L7I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I9_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.660e-52
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = -1 
Query:    4 MWYRLRYVCKALRHACCEPSPGDYDSCSDDDGNVLACEDIRRPNLQKLARAIPTSQPPSAKHAAGRGGRETDGGTAVHVADHGPPMQRLLSKD 282
            MWYRLRYVCKALRHACCE SPGDYDSCSDDDG+VL  EDIRRPNLQKLA AI TSQPPSAKH AGRGGRETDGG AVHVADHGPPMQR+LS+D
Sbjct:    1 MWYRLRYVCKALRHACCEASPGDYDSCSDDDGSVLTREDIRRPNLQKLAEAIATSQPPSAKHDAGRGGRETDGGIAVHVADHGPPMQRVLSED 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65339.17346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7I9_9PHAE1.660e-5289.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65339contigEcto-sp13_S_contig65339:365..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size395
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463901.2517092-CDS-Ecto-sp13_S_contig65339:364..7571681463901.2517092-CDS-Ecto-sp13_S_contig65339:364..757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65339 365..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65339.17346.1prot_Ecto-sp13_S_contig65339.17346.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65339 365..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65339.17346.1

>prot_Ecto-sp13_S_contig65339.17346.1 ID=prot_Ecto-sp13_S_contig65339.17346.1|Name=mRNA_Ecto-sp13_S_contig65339.17346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
AIFAQKTLHRRTVVGNMNRGPPVGLASTPTGSMFCRGGLGRRDSSGKLLQ
VRAPDILTGKNVPVVVAAAVVVPRTRLTAGVPQGLAHVPETVPHVSNRGV
LFSEWLASSATRGECRRVLFLSGNSRVTQAR
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mRNA from alignment at Ecto-sp13_S_contig65339:365..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65339.17346.1 ID=mRNA_Ecto-sp13_S_contig65339.17346.1|Name=mRNA_Ecto-sp13_S_contig65339.17346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65339:365..757+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATCTTTGCTCAAAAGACGTTGCATCGGAGGACCGTGGTCGGCAACAT
GAACCGCGGTCCCCCCGTCGGTCTCGCGTCCACCCCTACCGGCAGCATGT
TTTGCAGAGGGGGGCTGGGACGTAGGGATAGCTCTGGCAAGCTTCTGCAA
GTTAGGGCGCCGGATATCCTCACAGGCAAGAACGTTCCCGTCGTCGTCGC
TGCAGCTGTCGTAGTCCCCAGGACTCGGCTCACAGCAGGCGTGCCTCAAG
GCCTTGCACACGTACCGGAGACGGTACCACATGTGTCAAACCGTGGGGTT
CTGTTTTCTGAGTGGTTGGCGTCGTCCGCTACCCGCGGAGAGTGTCGTCG
GGTTCTGTTTCTTTCGGGGAACAGTAGGGTCACGCAGGCCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65339:365..757+

>mRNA_Ecto-sp13_S_contig65339.17346.1 ID=mRNA_Ecto-sp13_S_contig65339.17346.1|Name=mRNA_Ecto-sp13_S_contig65339.17346.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65339:365..757+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCATCTTTGCTCAAAAGACGTTGCATCGGAGGACCGTGGTCGGCAACAT
GAACCGCGGTCCCCCCGTCGGTCTCGCGTCCACCCCTACCGGCAGCATGT
TTTGCAGAGGGGGGCTGGGACGTAGGGATAGCTCTGGCAAGCTTCTGCAA
GTTAGGGCGCCGGATATCCTCACAGGCAAGAACGTTCCCGTCGTCGTCGC
TGCAGCTGTCGTAGTCCCCAGGACTCGGCTCACAGCAGGCGTGCCTCAAG
GCCTTGCACACGTACCGGAGACGGTACCACATGTGTCAAACCGTGGGGTT
CTGTTTTCTGAGTGGTTGGCGTCGTCCGCTACCCGCGGAGAGTGTCGTCG
GGTTCTGTTTCTTTCGGGGAACAGTAGGGTCACGCAGGCCCGC
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