mRNA_Ecto-sp13_S_contig6533.17344.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6533.17344.1
Unique NamemRNA_Ecto-sp13_S_contig6533.17344.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6533.17344.1 vs. uniprot
Match: A0A6H5K4V2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4V2_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 1.230e-140
Identity = 224/261 (85.82%), Postives = 233/261 (89.27%), Query Frame = 3 
Query:  264 QNIRSNIEHGATFLQSYVSSLQVRTDTKFSLLLGILLGLSVVAAIAAYPGKPIDYTGVGIDLPPEMRGEETVGVAKKVDEGESVGAVDEQKPAGLQQIQGVVDNLSQLRRXXXXXXXXXXXXXXXXSLVNTTTESQIKETGNVEDEAGRAEWDASRLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQSNSGPAGGSPARDNNDDLVGFSGLLSLAMLLVGLWALWAHLSAFPHGTLYRFLIGVFPREMETLGL 1046
            +NI S IE GAT LQSYVSSLQVRTDTKFSLLLGILLGLSVV AIA+YPGKPIDYTGVGIDLPPEMRGEETVGVAKK+D+  SVGAVDEQKPAGLQQIQGVVDNLSQLRR                SLVNTTTESQIKETGN EDEAGRAEWDA RLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQS+SGPAGGSPARD+NDD VGFSG LSLAMLLVG+WALWAHLSA+PHGTL RFL+GVFPREMETLGL
Sbjct:    2 ENILSKIEDGATVLQSYVSSLQVRTDTKFSLLLGILLGLSVVVAIASYPGKPIDYTGVGIDLPPEMRGEETVGVAKKLDQAGSVGAVDEQKPAGLQQIQGVVDNLSQLRRRKRAKNTPSSAAAGEESLVNTTTESQIKETGNAEDEAGRAEWDARRLDEDKLARKIGSSKAARMLGLTEDQVRQAVADAKQELEQSSSGPAGGSPARDSNDDGVGFSGFLSLAMLLVGMWALWAHLSAYPHGTLCRFLVGVFPREMETLGL 262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6533.17344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4V2_9PHAE1.230e-14085.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6533contigEcto-sp13_S_contig6533:2357..5277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1577
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005550.1
Cds size594
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6533.17344.1prot_Ecto-sp13_S_contig6533.17344.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6533 2882..4410 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463901.0976517-UTR-Ecto-sp13_S_contig6533:2356..28811681463901.0976517-UTR-Ecto-sp13_S_contig6533:2356..2881Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6533 2357..2881 -
1681463901.1586676-UTR-Ecto-sp13_S_contig6533:4410..44301681463901.1586676-UTR-Ecto-sp13_S_contig6533:4410..4430Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6533 4411..4430 -
1681463901.171925-UTR-Ecto-sp13_S_contig6533:4839..52771681463901.171925-UTR-Ecto-sp13_S_contig6533:4839..5277Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6533 4840..5277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463901.1166-CDS-Ecto-sp13_S_contig6533:2881..30041681463901.1166-CDS-Ecto-sp13_S_contig6533:2881..3004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6533 2882..3004 -
1681463901.1272066-CDS-Ecto-sp13_S_contig6533:3301..34241681463901.1272066-CDS-Ecto-sp13_S_contig6533:3301..3424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6533 3302..3424 -
1681463901.1375537-CDS-Ecto-sp13_S_contig6533:3671..37661681463901.1375537-CDS-Ecto-sp13_S_contig6533:3671..3766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6533 3672..3766 -
1681463901.148068-CDS-Ecto-sp13_S_contig6533:4157..44101681463901.148068-CDS-Ecto-sp13_S_contig6533:4157..4410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6533 4158..4410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6533.17344.1

>prot_Ecto-sp13_S_contig6533.17344.1 ID=prot_Ecto-sp13_S_contig6533.17344.1|Name=mRNA_Ecto-sp13_S_contig6533.17344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MRGEETVGVAKKVDEGESVGAVDEQKPAGLQQIQGVVDNLSQLRRRKREK
NPPSSAAAGEESLVNTTTESQIKETGNVEDEAGRAEWDASRLDEDKLARK
IGSSKAARMLGLTEDQVRQAVADAKQELEQSNSGPAGGSPARDNNDDLVG
FSGLLSLAMLLVGLWALWAHLSAFPHGTLYRFLIGVFPREMETLGLV*
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mRNA from alignment at Ecto-sp13_S_contig6533:2357..5277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6533.17344.1 ID=mRNA_Ecto-sp13_S_contig6533.17344.1|Name=mRNA_Ecto-sp13_S_contig6533.17344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2921bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6533:2357..5277- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGCATGGTCTTGCTCTCTCCCAAGGACAGGCTGGCTCTCTCCCTTG
CTTGGCAGTTTCATGGTTGTAGTCTACAATGTGTCTCCCGGTCGTTCGCA
CCCCGGACAGAGCTTGCGAGATGGACATGCGTCAATGACGACGTGACGAC
CTTTCAGCGCGTGCAAAAAGGTTGTCGTGCATCTTCAGCAGGTTAAATAC
GGTAATGGTAATGCTGTTCCTAAGCGACTCCAACCAACACCTCTCTTTTC
TCGTGCTCGCCGCCAGAATATCCGAAGCAACATCGAGCATGGGGCAACGT
TCCTTCAGAGCTATGTGTCCTCGCTACAAGTCCGCACAGACACCAAGTTC
TCCCTTCTTCTTGGCATACTGCTGGGTTTATCCGTGGTAGCCGCCATAGC
TGCTTATCCTGGCAAGCCCATCGATTACACCGGAGTTGGTGAGCCCATGA
TACGACGAGGATTTCGCCTCGTTGTGCCGGCACTGCTTTCTTTACTGCTG
TCTTCACAGGTCTGGACCGCGCTTGCCAGTCTTCATTTACTGTTGCCAAT
ACGCTTGACGGGCGTAGTAAGGTGGCCGTTAGACTCATGCACGGCATGAT
TACTAATGTTGCGACGGCCAGCATGCGGCTGCAGAGAATTTTTTTGCTGA
CATAGTATGTGTGCGGGTGTACGCATAGATCGCTGAGTAAAAGTCGGGAT
GATACGGAAACTGAGAGCAGAGAATCGCGCCACCAGGCGCAAACGACGTA
CAGCAGCAAGGAGGGCATCCGGCCAGCTGCGACTTTTGCCCAAATTGCAA
TGTTTTCTTACTTTCCGGTACCCGTGCCCCCGCTCTAATATCCCCAGGCA
TCGATTTGCCACCGGAGATGAGAGGGGAGGAGACAGTTGGGGTTGCGAAG
AAAGTCGACGAAGGAGAGTCCGTTGGGGCGGTAGACGAGCAGAAGCCGGC
CGGCTTGCAACAGATCCAGGGAGTGGTAGATAACCTGTCGCAGCTGCGGA
GACGAAAAAGAGAGAAGAATCCGCCGTCGTCAGCAGCGGCAGGCGAGGAG
TCCCTCGTCAACACCACCACAGAGAGCCAAATCAAAGAGACTGGAAACGT
CGAGGATGAGGCTGGAAGAGGTGAGGTTGTGTACCGAGCCTAATATGGAA
CGAATCCACAACATGCCCTGCGACGAAACGTGCGATAACAGGGGTGGGGG
GAGGACTAAAGGGTGCAGGAGACGTCAACGAATCACACGAGTCGTCCTTC
AGACCGACCGCACAAGAAGGGGCAGGACACATGGGTCCGTCCGTGCTAAT
GTGCCATTCCTTCTGGTCCCGATAGTGAGTATTCTAGTAGATCCGCGGTT
GCAGATAGTTTCGCGACTGCTGGGTTCACTCGAGAGGTTGTTTTTCTGGG
TAGAGATCGCTGCGAGTCTTTCGTCCATATTGAAAGTTCGTTGAATACTA
AGATTTACCATCGGTCAACGAGAACGAGCCCTTCCCACTGTGTTTTCTCA
CATCCCCTTAGCGGAGTGGGACGCCAGCCGACTGGACGAAGATAAATTAG
CTCGGAAAATTGGCTCCAGCAAGGCGGCCAGGATGTTGGGTTTGACGGAG
GACCAGGTGCGTAAACACGTTCCCACCTTCTAAACACCTGCTGTTCGACC
GATAAATCCACGGAGGTATTGCTGGGTGTGGTTGGAATGGCAGGGAGAAT
CCTCGACCCATGCCCTCCCATGTGCCTTTTAAGTTGTTGCTCCGGCAAGG
CATCTATGTTAACTGACGTCGGGCTGATCCCTCACGGAGCCTCTGGCACA
TCAGCAACATTATGTGTGTCTTCCTTGCTCGGTTTGACACATGTCTGGTG
AAGGTTCGTCAAGCTGTTGCGGACGCGAAACAGGAGCTTGAGCAGTCAAA
CTCGGGGCCGGCCGGTGGGTCCCCTGCGCGAGACAACAACGATGACCTCG
TGGGATTTTCCGGATTGCTCTCCTTGGTGAGGAGGAAGGGGTGTAGAGGA
AGTCTCTCTGATGGTCTCCGTGCGCAGCCGCGCAGCCATGCGAAAGGCGG
TGCTGCCACCCCACTTGCCGTTGTAACTTGCAAGAGCGCTACAGCGATGG
TACATGAAGCGAAGTACAGTATCATGATCTAGACCCCAGCGAGGCAAGAT
GGCGTTGAGCTGGCGGTGTAGGTCCAAAAGATTTTTTGACACCTTTTTTG
CAACCCATATGCGCCAGCTATTGACTTGGTCGGTACCATTGCCATCCTTT
TTTTCTTCTCCGACGTGTTGCAGGCTATGCTGCTGGTGGGATTGTGGGCA
CTGTGGGCTCACCTCTCGGCATTCCCTCACGGGACGCTTTACCGGTTTCT
CATTGGAGTCTTCCCCCGCGAGATGGAGACCTTGGGGCTTGTATAGAACC
AGCAATCAGACAGGAGAAAGAGCAGCTTTACACCCATCCGGGCGGATTCT
ATTGTAAATTTGAGCTCGCGGGAGAAAAGGGGCTTCAAAAATCAGTGTGC
TCAAACCACTGGTGTGCCGGTTTTGCGAAAAAGTAGGGTCTGGTTGTCGA
AGGAGGTCGACTTTGCAATGACCTGGCCGGGAGTAGAGCAACCCCAATAC
ATCGTAAGTAGCGAGCTGAAGGCCGTTGTGTGCTGTTGCTGTTGTGGGGG
CCTAATTTGGCTCATATAAATAGCGTCGTGTCAATCATTCGTTTTACGGA
TCAGACTTGAGCGGTTGCGCGTTGGCCATGGAGTTAAAACACCGAGGGAA
CAGCAGTTTTGCCCTTCTACGTGTACGGATCAGTTTACAAATTGCGATGT
AGGTACAGTTGTTTGATAAGCCAAGGATGCCGTTCCGTACACCCTGAGAC
ATGCACACCTTGTTCATGGGACCGACCTGCCGTAAGCGTCAGTTATTTCG
GGCAAACAAATGTATATAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6533:2357..5277-

>mRNA_Ecto-sp13_S_contig6533.17344.1 ID=mRNA_Ecto-sp13_S_contig6533.17344.1|Name=mRNA_Ecto-sp13_S_contig6533.17344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6533:2357..5277- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGGGGAGGAGACAGTTGGGGTTGCGAAGAAAGTCGACGAAGGAGA
GTCCGTTGGGGCGGTAGACGAGCAGAAGCCGGCCGGCTTGCAACAGATCC
AGGGAGTGGTAGATAACCTGTCGCAGCTGCGGAGACGAAAAAGAGAGAAG
AATCCGCCGTCGTCAGCAGCGGCAGGCGAGGAGTCCCTCGTCAACACCAC
CACAGAGAGCCAAATCAAAGAGACTGGAAACGTCGAGGATGAGGCTGGAA
GAGCGGAGTGGGACGCCAGCCGACTGGACGAAGATAAATTAGCTCGGAAA
ATTGGCTCCAGCAAGGCGGCCAGGATGTTGGGTTTGACGGAGGACCAGGT
TCGTCAAGCTGTTGCGGACGCGAAACAGGAGCTTGAGCAGTCAAACTCGG
GGCCGGCCGGTGGGTCCCCTGCGCGAGACAACAACGATGACCTCGTGGGA
TTTTCCGGATTGCTCTCCTTGGCTATGCTGCTGGTGGGATTGTGGGCACT
GTGGGCTCACCTCTCGGCATTCCCTCACGGGACGCTTTACCGGTTTCTCA
TTGGAGTCTTCCCCCGCGAGATGGAGACCTTGGGGCTTGTATAG
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