mRNA_Ecto-sp13_S_contig6533.17343.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6533.17343.1
Unique NamemRNA_Ecto-sp13_S_contig6533.17343.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6533.17343.1 vs. uniprot
Match: D8LQG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG4_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 4.950e-140
Identity = 255/283 (90.11%), Postives = 263/283 (92.93%), Query Frame = 2 
Query:    2 MRANSEHWRVRYPQRTPIPRRPSTRFDARRAAVGPTAAGADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVEFVSNKRAAGGPATDHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSRRIQPPAAARPTYKHGPKIAQVLETMDGHGGGTLPPIRRQLKVHVSSSPSFRVQPVTPPPSPANANESSIGRGIADDMDHPDASVPSPRRKDHEGWTFAEGLGGLVGLGLLQGSVDP 850
            MRANSEHWRVRYPQRTPIPRRPSTRFDARR+AVGP AA ADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GVE VSNKRAAGGPA DHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRS+RIQPPAAARPTY+HG KIAQ LE MDGHGG T PPIRRQ KVH+SSSPSFRVQPVTPPPSPANANE+SIGRG+AD+MDHPDAS  SPRRK H+GWTFAEG  GLVGLGLL GSVDP
Sbjct:   38 MRANSEHWRVRYPQRTPIPRRPSTRFDARRSAVGPAAARADSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGTGVELVSNKRAAGGPAADHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIVEGSSGVLGRTLRNKRSKRIQPPAAARPTYQHG-KIAQALERMDGHGGSTRPPIRRQFKVHLSSSPSFRVQPVTPPPSPANANETSIGRGVADEMDHPDASGSSPRRKGHKGWTFAEGFDGLVGLGLLPGSVDP 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6533.17343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQG4_ECTSI4.950e-14090.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6533contigEcto-sp13_S_contig6533:88..2303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1434
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_005540.1
Cds size852
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.9827135-UTR-Ecto-sp13_S_contig6533:87..881681463900.9827135-UTR-Ecto-sp13_S_contig6533:87..88Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6533 88..88 +
1681463901.0628061-UTR-Ecto-sp13_S_contig6533:1722..23031681463901.0628061-UTR-Ecto-sp13_S_contig6533:1722..2303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6533 1723..2303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463901.036573-CDS-Ecto-sp13_S_contig6533:88..5221681463901.036573-CDS-Ecto-sp13_S_contig6533:88..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6533 89..522 +
1681463901.0471036-CDS-Ecto-sp13_S_contig6533:1304..17221681463901.0471036-CDS-Ecto-sp13_S_contig6533:1304..1722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6533 1305..1722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6533.17343.1prot_Ecto-sp13_S_contig6533.17343.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6533 89..1722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6533.17343.1

>prot_Ecto-sp13_S_contig6533.17343.1 ID=prot_Ecto-sp13_S_contig6533.17343.1|Name=mRNA_Ecto-sp13_S_contig6533.17343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=284bp
MRANSEHWRVRYPQRTPIPRRPSTRFDARRAAVGPTAAGADSPPPPLLFD
QRQRSSSRKLFLSPAGRRPPDDHRVVQHAASAAAGGAGVEFVSNKRAAGG
PATDHGRAVRFDRVVKLILVPSRLDLSAGLSDELWWNEDDYLQFRLGAIV
EGSSGVLGRTLRNKRSRRIQPPAAARPTYKHGPKIAQVLETMDGHGGGTL
PPIRRQLKVHVSSSPSFRVQPVTPPPSPANANESSIGRGIADDMDHPDAS
VPSPRRKDHEGWTFAEGLGGLVGLGLLQGSVDP*
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mRNA from alignment at Ecto-sp13_S_contig6533:88..2303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6533.17343.1 ID=mRNA_Ecto-sp13_S_contig6533.17343.1|Name=mRNA_Ecto-sp13_S_contig6533.17343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6533:88..2303+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCGTGCCAACTCTGAACACTGGCGAGTAAGGTACCCACAGAGAACTC
CCATCCCGAGAAGACCCTCGACGCGATTCGACGCACGTCGAGCGGCGGTA
GGTCCAACAGCAGCAGGGGCGGATTCTCCGCCACCGCCGCTGTTGTTTGA
TCAGAGACAACGCTCTTCGTCGAGGAAGTTGTTTCTGTCGCCGGCAGGGC
GGCGACCGCCGGACGACCACCGTGTTGTGCAGCACGCCGCTTCCGCTGCT
GCGGGTGGCGCTGGTGTTGAGTTTGTCAGCAACAAGCGGGCGGCGGGCGG
CCCGGCCACCGATCACGGCCGCGCGGTCCGCTTCGACCGCGTCGTGAAGC
TGATCCTGGTGCCGAGCCGCCTAGACTTGAGCGCCGGTCTGAGCGACGAG
CTCTGGTGGAACGAGGACGACTACTTGCAGTTCAGGTGAAGGCAACAGCA
GCAACAGCAGCAGCAGCAGCAGCAGCAGGCTTGGTATCATGCGGGGTAAT
TGCGTTGTTGTCGGGGTTCACGGCTCTCTGGCTCTCGGCATGTTCGTGTC
ACTAGCACAGTTATGCTCCGAAGTATCATAAGTTTTGATCACTGACGTGT
TTCCTTTGCACGCTATGGTAAGAGTATAGGAGTATGACATTGTCGTGGGA
GACACGAATGTCGGCAATTGTATCAAATGTTTCCGTACCGAGGTGTGAGG
GATAGCATTGTGATATCGAGTTTTATTATCGCCCAGGACGAAAACACACA
GGACCACACGAGGACTGGTGAAGCGTCTGCAGCGATGTAGACATTTTCGG
AGGAACACGGTTGGTCGATGCATGCCTCACTGAGGGCTTCGCATCTCGAA
GCGTGATGGCATATTCATGTTTTCGCATTGACCAACACATGTTCGTCACG
ACCTACCTGCCTCTCTAGATCGATGAGTGTGACTGCTTCAATGCGATTTT
ACCCCGAGCAACATGCTCGCCCCGTGGCTGCTTAGATAACGAATCTCGAG
TTCCAAACGCGACTATGCACAGAGTGTGTTGACACCATCATGGGCAGCAA
CCAAATGGGACGCAACCAACAGCGCGTGCCTCGCGTCTACAAAGCATAAA
TAAGTTATGTGTGGGGAGCAATGTTCTGGGAATCGTTCAAGAAGCGCTTA
AGAGAGCTTCAACCAACCACTTCCGGTCGTTCCCTCATGTCCCCAACCCC
CCCCGTGTTGTTTTTAGATTGGGTGCCATCGTGGAGGGTAGTTCCGGGGT
ACTGGGAAGGACTCTCCGGAATAAGCGATCCAGGCGCATTCAACCGCCAG
CCGCCGCCAGGCCGACCTACAAACACGGACCAAAGATCGCTCAGGTGCTG
GAAACAATGGACGGCCACGGCGGTGGCACGCTTCCCCCCATCCGTCGGCA
GTTGAAGGTTCATGTATCGTCTTCCCCCTCCTTTCGAGTCCAGCCGGTTA
CCCCGCCCCCTTCTCCGGCCAACGCCAACGAGAGTTCCATTGGGCGTGGT
ATTGCAGACGACATGGATCACCCCGATGCTTCAGTGCCTTCCCCCCGGCG
TAAGGACCATGAAGGGTGGACCTTTGCGGAGGGTCTCGGTGGCCTGGTCG
GCCTTGGCCTCCTACAGGGGTCAGTGGATCCCTGATAGCGGCGAGTGGTG
TCAACTGTAGTGATGGAGATATCTGCAGGTGAGCGGTTGAAATCGCCAAC
GGCCGAGTGGTCGTCGAGCTCACAGGGATTGTAGCGTTTTCGCTGGGGGA
GTGATGTTGAGGGCGAGGTGCTTAGTTCAAGAAATGGCGTCCACTGTTCA
GCGTGTAGGTTCTGTCGGATGGGGAACGGACGCGGCACAATGTAGTGCAC
GTAGTTGTGATTGTGATAGTGGTGCTCGTGAAGGCATGGTACTGGCGATT
GTGGTTTGCCGCTGGGTGGTGATGTTGGTGCTGTGAGGACAGTAGTGCGA
GTGGGGCTCCCTTTTTTTCTGTGCTAGTCACGGAACAATTTTGAAACAAT
TTTGAGAAACGGTTGTGTTGTTTGTGTTGTTGATAAGTTTTGAGTGGAGT
GTTGGCATTTGAATTTGGTTCATTTCTATTGTTCAGGGTATGCGTGTGCG
TCGATTCTTGGCGGAAGGGGGGGGCAAGGTTGCGATTTCCTTTGCTTCGT
GCACCTATTGCGGTCGTGGGATATAGGCTTGCGTGCTTGCGTGGCCAACT
CGAATGTTGCCGCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6533:88..2303+

>mRNA_Ecto-sp13_S_contig6533.17343.1 ID=mRNA_Ecto-sp13_S_contig6533.17343.1|Name=mRNA_Ecto-sp13_S_contig6533.17343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6533:88..2303+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTGCCAACTCTGAACACTGGCGAGTAAGGTACCCACAGAGAACTCC
CATCCCGAGAAGACCCTCGACGCGATTCGACGCACGTCGAGCGGCGGTAG
GTCCAACAGCAGCAGGGGCGGATTCTCCGCCACCGCCGCTGTTGTTTGAT
CAGAGACAACGCTCTTCGTCGAGGAAGTTGTTTCTGTCGCCGGCAGGGCG
GCGACCGCCGGACGACCACCGTGTTGTGCAGCACGCCGCTTCCGCTGCTG
CGGGTGGCGCTGGTGTTGAGTTTGTCAGCAACAAGCGGGCGGCGGGCGGC
CCGGCCACCGATCACGGCCGCGCGGTCCGCTTCGACCGCGTCGTGAAGCT
GATCCTGGTGCCGAGCCGCCTAGACTTGAGCGCCGGTCTGAGCGACGAGC
TCTGGTGGAACGAGGACGACTACTTGCAGTTCAGATTGGGTGCCATCGTG
GAGGGTAGTTCCGGGGTACTGGGAAGGACTCTCCGGAATAAGCGATCCAG
GCGCATTCAACCGCCAGCCGCCGCCAGGCCGACCTACAAACACGGACCAA
AGATCGCTCAGGTGCTGGAAACAATGGACGGCCACGGCGGTGGCACGCTT
CCCCCCATCCGTCGGCAGTTGAAGGTTCATGTATCGTCTTCCCCCTCCTT
TCGAGTCCAGCCGGTTACCCCGCCCCCTTCTCCGGCCAACGCCAACGAGA
GTTCCATTGGGCGTGGTATTGCAGACGACATGGATCACCCCGATGCTTCA
GTGCCTTCCCCCCGGCGTAAGGACCATGAAGGGTGGACCTTTGCGGAGGG
TCTCGGTGGCCTGGTCGGCCTTGGCCTCCTACAGGGGTCAGTGGATCCCT
GA
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