mRNA_Ecto-sp13_S_contig6524.17334.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6524.17334.1
Unique NamemRNA_Ecto-sp13_S_contig6524.17334.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6524.17334.1 vs. uniprot
Match: D8LBC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 6.330e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:  311 MTQLLCAWWKKFWRNTRSNIDVLQRRTSTFWSAVQC*RR 427
            MTQLLCAWWK+FWRNTRS ID LQRR      A++C RR
Sbjct:    2 MTQLLCAWWKRFWRNTRSEIDGLQRRLGEPKRALRCLRR 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6524.17334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBC4_ECTSI6.330e-869.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6524contigEcto-sp13_S_contig6524:2434..4335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size616
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.1967587-CDS-Ecto-sp13_S_contig6524:2433..26041681463900.1967587-CDS-Ecto-sp13_S_contig6524:2433..2604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6524 2434..2604 -
1681463900.208356-CDS-Ecto-sp13_S_contig6524:2994..30511681463900.208356-CDS-Ecto-sp13_S_contig6524:2994..3051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6524 2995..3051 -
1681463900.2197683-CDS-Ecto-sp13_S_contig6524:3948..42751681463900.2197683-CDS-Ecto-sp13_S_contig6524:3948..4275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6524 3949..4275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463900.2307603-UTR-Ecto-sp13_S_contig6524:4275..43351681463900.2307603-UTR-Ecto-sp13_S_contig6524:4275..4335Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6524 4276..4335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6524.17334.1prot_Ecto-sp13_S_contig6524.17334.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6524 2434..4275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6524.17334.1

>prot_Ecto-sp13_S_contig6524.17334.1 ID=prot_Ecto-sp13_S_contig6524.17334.1|Name=mRNA_Ecto-sp13_S_contig6524.17334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MLWYDGRSDDPIADHRDRWVPPTSSSPHRGKQNPDYAFGCDRDCNGNVGG
EIFDPPSGDEGGGDGRREWDVEGRYLGGAGGEEDDTAALRLVEKVLAKHS
KQHRRPSTTHVNLLERGAVLKTRMFGPQSSAAQEAFKDTIVACNSLAMSA
LGRGHTERCRDLLERAFQIASSETRRQRNSKNSDG
back to top

mRNA from alignment at Ecto-sp13_S_contig6524:2434..4335-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6524.17334.1 ID=mRNA_Ecto-sp13_S_contig6524.17334.1|Name=mRNA_Ecto-sp13_S_contig6524.17334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1902bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6524:2434..4335- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAACAACAAGCAAGCGTAGCCTGGGAGTTACGGGCCAGTACAACGTGT
GAAATGCAGCATGCTGTGGTACGATGGGCGTTCAGACGATCCCATCGCAG
ATCACCGTGATAGATGGGTACCACCGACATCATCATCACCACATCGTGGG
AAGCAGAATCCCGACTACGCCTTCGGATGCGACCGCGACTGTAACGGCAA
CGTCGGAGGCGAGATATTTGATCCACCTTCTGGTGATGAAGGCGGTGGTG
ACGGTAGACGGGAATGGGATGTAGAAGGTCGATATCTCGGAGGAGCTGGT
GGCGAAGAAGATGACACAGCTGCTCTGCGCTTGGTGGAAAAAGTTTTGGC
GAAACACTCGAAGCAACATCGACGTCCTTCAACGACGGTAAGATGAGATA
TTCACACAGCAGCAGCAACATGAACTAACCCTTCCGCCTTGTTGACGTGT
GGTGAGTGCGTGGCATTCCGCACGCTTTGATTTAACTGAATCCGACATGT
GCCAGCAGCAGTATTGGGCTTGGACGATTTAGACTCCATATGCGCCATCT
ACTGCTGTATACGTCACAAGAATGGTTGTTCTTATTTTACAACACCATAC
GGCACCGGTGCCGCCGCCGCCGCCGCCGCATGCGTTTAGACTACATAGCG
TACGTATAGTTTTATGTGCCATGGAGGTCGAGGTACCTGCAGCTGAGCAA
TCACATCGTTCTCAAAGCCGTGGGGATGATCTCGGCGAGTTACCCTGGAG
ATGTGCGTCTAGATGTATGTGTGCTGTCACACTCCCATCCATGTTCTCGT
CAGAGTGCACGTTCCGGTAAATCGGCAAGTCACCTGCTGCGGTGCTTGCC
TGAGTTTCATCCCGAAAAGGATTTGGTCGTTCATTTCCCTCGTCAACCCT
GAAGTCGACTCTTTCGAAGTATTCTGGATCAATCTATACCACCGACCAAA
TACATAATAGTCCATTTGTCTAGAGTATAGTCTAGTGTACAACAGTCGTC
CGCTCTCTTGTGGGGCATGGTGACGGTAGAGTAAGACCAGCTCGTCGTGT
GACGAGATGCGAGCTCGCGTCCCAACATCACAAGGGTGGGAGTCTAGACA
ACAGGGGTGTTTCGGACTATTTGTATCCCGTGGCGTAGAGCATCTTCTCC
CAAAAACAAAAGTGTGGAGGTGGTAACTGTTGGCTGTATGTGTTGACGCC
GACACTGTGTTTGCTTGCATGAAGATTCCCTACCCCATCACCTGTGGTAT
ACGCCTCGTATCGGTCTGGCCAACATGAAAGCAGCACGTCAACCTTTTGG
AGCGCGGTGCAGTGCTGAAGACGCGAATGTTTGGACCCCAGGTGCGTACA
CTTAGCGCAAGTTGGGGGTAGTTGCACTGAAAAACAACCACCGCCAATGT
ACATGGAGCTCTCCGAAGGTAAATGTGAACGGATCACATCCATGGGACAC
TATGTAATACCAGTTAAGCGTGTAGCCTCCTGAGGTGGGCACCACCACGT
TATTACCTGAACGGTGCACAGAGGGAGAATATGCAGCCACGATAGTTGAT
ACCATCTCAGTCGCCGTCGCTGTCTCCACTCTCGATGAGCAAAGGCCAAT
GCTACCACCTTGAAGAACCCTCGTTCTTTGCTACCAAGGCAGGTAGATAT
CGTAAAATGCGCTTGTAATCGTGTTGGGGTGAATGCATGACAAAGCTGAA
TCCAACCACCCGAACCTCGTGCGTTCGGCAGAGCTCAGCCGCGCAGGAAG
CCTTCAAGGACACGATCGTGGCATGCAACTCCCTCGCCATGTCTGCCCTT
GGTCGTGGCCACACGGAGCGCTGCAGAGATCTCTTGGAACGAGCGTTCCA
AATAGCGAGCAGCGAAACACGGCGACAGCGAAACAGCAAAAACAGCGACG
GG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6524:2434..4335-

>mRNA_Ecto-sp13_S_contig6524.17334.1 ID=mRNA_Ecto-sp13_S_contig6524.17334.1|Name=mRNA_Ecto-sp13_S_contig6524.17334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6524:2434..4335- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTGGTACGATGGGCGTTCAGACGATCCCATCGCAGATCACCGTGA
TAGATGGGTACCACCGACATCATCATCACCACATCGTGGGAAGCAGAATC
CCGACTACGCCTTCGGATGCGACCGCGACTGTAACGGCAACGTCGGAGGC
GAGATATTTGATCCACCTTCTGGTGATGAAGGCGGTGGTGACGGTAGACG
GGAATGGGATGTAGAAGGTCGATATCTCGGAGGAGCTGGTGGCGAAGAAG
ATGACACAGCTGCTCTGCGCTTGGTGGAAAAAGTTTTGGCGAAACACTCG
AAGCAACATCGACGTCCTTCAACGACGCACGTCAACCTTTTGGAGCGCGG
TGCAGTGCTGAAGACGCGAATGTTTGGACCCCAGAGCTCAGCCGCGCAGG
AAGCCTTCAAGGACACGATCGTGGCATGCAACTCCCTCGCCATGTCTGCC
CTTGGTCGTGGCCACACGGAGCGCTGCAGAGATCTCTTGGAACGAGCGTT
CCAAATAGCGAGCAGCGAAACACGGCGACAGCGAAACAGCAAAAACAGCG
ACGGG
back to top