mRNA_Ecto-sp13_S_contig65211.17330.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65211.17330.1
Unique NamemRNA_Ecto-sp13_S_contig65211.17330.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65211.17330.1 vs. uniprot
Match: A0A6H5J9Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Y9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.830e-26
Identity = 56/71 (78.87%), Postives = 61/71 (85.92%), Query Frame = -2 
Query:  171 GGRRVRAGSRDGGGGSDGVFSAADVHPRWWSESSGNVEGPCGVRRSSTVGVRRSIPLACLAPGPASGKSSA 383
            GGR VRA SRDGGGG+DGVF A DVHPRWWSES G V GPC VRRSS+VG+R S PLAC+APGPASG+SSA
Sbjct:   11 GGRMVRARSRDGGGGTDGVFPAVDVHPRWWSESDGKVGGPCSVRRSSSVGIRCSTPLACVAPGPASGESSA 81
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BLAST of mRNA_Ecto-sp13_S_contig65211.17330.1 vs. uniprot
Match: D8LI01_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI01_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.720e-25
Identity = 56/70 (80.00%), Postives = 62/70 (88.57%), Query Frame = -2 
Query:  174 GGRRVRAGSRDGGGGSDGVFSAADVHPRWWSESSGNVEGPCGVRRSSTVGVRRSIPLACLAPGPASGKSS 383
            GGRRVRA S + GGG+DGVFSA +VHPR WSES GNV GPCGVRRSS+VGVRRSI LAC+APGPASG+SS
Sbjct:   49 GGRRVRARSGESGGGADGVFSAVNVHPRRWSESDGNVGGPCGVRRSSSVGVRRSISLACVAPGPASGESS 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65211.17330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9Y9_9PHAE1.830e-2678.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI01_ECTSI5.720e-2580.00Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65211contigEcto-sp13_S_contig65211:2..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size386
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463899.8983603-CDS-Ecto-sp13_S_contig65211:1..3851681463899.8983603-CDS-Ecto-sp13_S_contig65211:1..385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65211 2..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65211.17330.1prot_Ecto-sp13_S_contig65211.17330.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65211 2..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65211.17330.1

>prot_Ecto-sp13_S_contig65211.17330.1 ID=prot_Ecto-sp13_S_contig65211.17330.1|Name=mRNA_Ecto-sp13_S_contig65211.17330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
KIGTIAAAAEGGVCGGGRRGDGERDRAQVELAREEERWLADEDDDDDGTH
PPPRSPAAEDFPDAGPGARQARGMERRTPTVLLRRTPHGPSTFPLDSLHH
RGCTSAAENTPSLPPPPSLLPALTLLPP
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mRNA from alignment at Ecto-sp13_S_contig65211:2..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65211.17330.1 ID=mRNA_Ecto-sp13_S_contig65211.17330.1|Name=mRNA_Ecto-sp13_S_contig65211.17330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=386bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65211:2..387+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATCGGGACAATTGCTGCTGCTGCTGAAGGAGGCGTTTGTGGTGGCGG
GCGGCGAGGGGACGGGGAACGCGACAGGGCCCAGGTGGAACTGGCGCGGG
AGGAAGAGAGGTGGCTTGCTGACGAAGACGACGACGACGACGGCACCCAC
CCTCCTCCTCGTTCTCCTGCCGCCGAAGATTTTCCTGATGCTGGGCCGGG
AGCCAGACAGGCGAGAGGAATGGAACGGCGAACACCGACGGTACTGCTAC
GACGCACTCCGCACGGGCCCTCGACGTTCCCGCTCGACTCGCTCCACCAT
CGGGGATGCACGTCTGCGGCCGAAAACACTCCGTCGCTGCCGCCGCCACC
ATCCCTGCTGCCAGCCCTAACCCTCCTGCCCCCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65211:2..387+

>mRNA_Ecto-sp13_S_contig65211.17330.1 ID=mRNA_Ecto-sp13_S_contig65211.17330.1|Name=mRNA_Ecto-sp13_S_contig65211.17330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65211:2..387+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATCGGGACAATTGCTGCTGCTGCTGAAGGAGGCGTTTGTGGTGGCGG
GCGGCGAGGGGACGGGGAACGCGACAGGGCCCAGGTGGAACTGGCGCGGG
AGGAAGAGAGGTGGCTTGCTGACGAAGACGACGACGACGACGGCACCCAC
CCTCCTCCTCGTTCTCCTGCCGCCGAAGATTTTCCTGATGCTGGGCCGGG
AGCCAGACAGGCGAGAGGAATGGAACGGCGAACACCGACGGTACTGCTAC
GACGCACTCCGCACGGGCCCTCGACGTTCCCGCTCGACTCGCTCCACCAT
CGGGGATGCACGTCTGCGGCCGAAAACACTCCGTCGCTGCCGCCGCCACC
ATCCCTGCTGCCAGCCCTAACCCTCCTGCCCCCT
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