mRNA_Ecto-sp13_S_contig6517.17319.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6517.17319.1
Unique NamemRNA_Ecto-sp13_S_contig6517.17319.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6517.17319.1 vs. uniprot
Match: D7FY41_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY41_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.480e-9
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  254 CAICLVDYEAEDELRKLPCRHAFHKT 331
            CAICLV+YEAEDELRKLPCRHAFHKT
Sbjct:   54 CAICLVEYEAEDELRKLPCRHAFHKT 79
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BLAST of mRNA_Ecto-sp13_S_contig6517.17319.1 vs. uniprot
Match: A0A6H5JPD9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.070e-8
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -3 
Query:  254 CAICLVDYEAEDELRKLPCRHAFHKT 331
            CAIC+VDYEAEDELRKLPCRHAFHKT
Sbjct:  363 CAICIVDYEAEDELRKLPCRHAFHKT 388
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BLAST of mRNA_Ecto-sp13_S_contig6517.17319.1 vs. uniprot
Match: A0A8J6DNI2_GALPY (RING-type E3 ubiquitin transferase n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6DNI2_GALPY)

HSP 1 Score: 50.1 bits (118), Expect = 9.380e-5
Identity = 24/54 (44.44%), Postives = 32/54 (59.26%), Query Frame = -3 
Query:  170 CAICLVDYEAEDELRKLPCRHAFHKTVSCPLLKPLEDFSELQTCMISQHSLHPG 331
            CAICL +YE  D+LR LPC HA+H     P L   +     +TC I + ++HPG
Sbjct:  231 CAICLEEYENGDQLRVLPCAHAYHSRCVDPWLTGTQ-----KTCPICKQTVHPG 279
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6517.17319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FY41_ECTSI7.480e-996.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JPD9_9PHAE4.070e-896.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8J6DNI2_GALPY9.380e-544.44RING-type E3 ubiquitin transferase n=1 Tax=Galemys... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6517contigEcto-sp13_S_contig6517:1621..4862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size333
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.7474124-UTR-Ecto-sp13_S_contig6517:1620..17341681463898.7474124-UTR-Ecto-sp13_S_contig6517:1620..1734Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6517 1621..1734 -
1681463898.7798238-UTR-Ecto-sp13_S_contig6517:4853..48621681463898.7798238-UTR-Ecto-sp13_S_contig6517:4853..4862Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6517 4854..4862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.7578018-CDS-Ecto-sp13_S_contig6517:1734..17591681463898.7578018-CDS-Ecto-sp13_S_contig6517:1734..1759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6517 1735..1759 -
1681463898.7686024-CDS-Ecto-sp13_S_contig6517:4668..48531681463898.7686024-CDS-Ecto-sp13_S_contig6517:4668..4853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6517 4669..4853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6517.17319.1prot_Ecto-sp13_S_contig6517.17319.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6517 1735..4853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6517.17319.1

>prot_Ecto-sp13_S_contig6517.17319.1 ID=prot_Ecto-sp13_S_contig6517.17319.1|Name=mRNA_Ecto-sp13_S_contig6517.17319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MMVTIFGPLCLLRMHERIENQVAGSLFMCQPAAIRWAPDYYTSRFMPCLI
HFISRGGGSVARSYRFVAR*
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mRNA from alignment at Ecto-sp13_S_contig6517:1621..4862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6517.17319.1 ID=mRNA_Ecto-sp13_S_contig6517.17319.1|Name=mRNA_Ecto-sp13_S_contig6517.17319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6517:1621..4862- (Ectocarpus species13 EcNAP12_S_4_19m)
AAATACTAAATGATGGTGACAATTTTCGGGCCCCTCTGTCTACTACGAAT
GCATGAAAGGATTGAGAATCAGGTGGCTGGTTCTCTGTTCATGTGCCAGC
CTGCAGCTATTCGCTGGGCGCCAGACTACTACACCTCTCGGTTTATGCCA
TGTTTGATTCATTTTATTAGCCGGGGTGGAGGGAGTGTTGCGAGGTGAGC
GCCGCTGGCATACGGGGCTCGACTGCACCACCACCAAAAGGGTTTGATGG
ACCCAATGGACCCCAAAACGGCCACCAAAAGATCGCCGTGTAAAATACAA
TGAGGCACAACGTGACCAGTCGTTATTCCTGGAGAAAAAAAAATCGACTT
TTTCTGCACCTTTCCTTCCCCCTGAGCGGTCAACCGCGCCAGGTCTCAGA
CAGACCACCAGGCAGGCTATCCTCTACACTGTACCGTCCCCGCGTGTCCT
AGCATTGGTACCCTACAACACACCGACCCTTCGTGGGAGAGGCGAAGCAT
TTCCGAGTCCAGCAGCAACAAACTGCAATGGACGCTGCACTTATCGCCCC
TCCTTTCATAACAAGACCAGAACATATCAATACATCAACCGATCTCGAAG
TGATCATACGAATCTGACCTGCCCCATCCGTTGGAATGTGTCCCTTGGTG
AGCATAGTCTACCGATCAATGAATCACGACGCACCCAAACTTCCCCCTCT
CATCTGCACCTGCCCCTGTTCAGAGGGGGAAAGTTTGCATTACGGTGGGA
AGGGCGTAAGTTACGTGCGTACGTAGACCACAGCATTCACGAGGCGGGAA
ACAATGTGTAAGACACGTCTAACATTTTATATACACGCGCTGTTGCTTCC
GCAATAACAGCGGCGGCGGCGCGACAAAGCGACGCAAGTTTTATGTTCTC
GAAAATGCTGGAATGGAGCAACAACCTTTACTACTCTTGGGCACGCACCC
AACAAGCCCCTTCACTCATGCCCACAAGAATGCGAGTAGCCGTCCAAGCG
ACATGACACTACGCCTAAATTGATCACCGCGAAACCAGTGTATCGACACA
CACAGGACAGGTATCAGCATCGTGCACAAAACAAGAGAGACATGCAGGGC
GCCCACCAGCCAACCCAGAACCATCTATTCATACGGGCGCCAGCCACCAC
ACGGAAAAAAAAAAAAGGCCACCTGATACATACAATCACCAAAAACCGTT
ACATCGGCAGGCATGGTAGCGCTAGGCAACGCACAAAACCCAGAGAGGGA
AGGGCAAGGCGCGAATTGGAACAAATTGCATCAACAACATGCGTTAGGCG
GGGTAGTCTTGTCACAAAAGCCGGCTATCAAATTCAAACTTGTTATGCTG
GCACTCAGTCACAATTATATCGGAGAGACAACAGCAAACGTTTCACACAG
CCACCAAAACACCGCCCGAAGCCCGGCCAGCAAAAAACTCCTCACCCAGA
ATCGCTGGACCGAGGGGTGCGTGCCTGCCACTACCAAAAAACGACCTTAG
CAAACACGACAGCACGCCCAAAGCCTCCGCAGCAAGGTTAGGGGTAGGCC
CGACAAACAGACGCACATGTCACACAGACACACCGGGAACCATCAAGATT
CGATCGCGCGTGATACTGATGATGGAGCCCAACTACTCGTCCTGCTGAAC
CAACCCTACCCGATTGTGGCCCCTCTGCAGGATCTCGACAACTGATTGTC
CTTTCGTCTTCTCCCGACTGGTCTGATCTGATCTCTACGTATCGTTTCAA
AATAACCCTCTTTTCTAGATTCCACTAGGGTTAGTCACTCGTTCACTCAC
TGCGCCTTGAACGGTTTCGGAGAAAAATAACCAAAATCGCAAGCCCGGCT
GCAAAAAACATCTTAAGCCCGACGGTCCCGCGAGCTCCGCGTTCCAGAGC
GCCACACATCGAGCCATCCGAGACATCCCCCGGTAAGATCTGCAGCATGC
AGTTTTCCCAGACCCTTCTTCGCCAGTACACGACTGCTGTAGTCCCACTC
TCGCTTGTTTGTGAATTGCACCGCGTGGAACCTTGATGTCGTGTAGCGAA
TCTAGCTCTTGCCAGGAGACTTGTTCCCGCAAGCTCAGCCGACGCCATTC
TCAGCACCGTGATCAGAACCGTTCTCAACGTTGTTTCTCAGCACCGCTTG
AAGCATAACTCTCAGCACCGTTCCAAGCACCGTGATCAGAACCGTTCTCA
ACAGCAGTGCTTCTCTGCATCGGTTGAAGCACCACTCTCAGCACCGTTCC
AAGCACCGGTTCTCCAGCGTAGTGCCGTGGTCAGCCGTACGTTGACAGGA
CGCAAACAGTGGCGGCGTCATGCCAGATTGTCTCCAACTGGTACGGGTGC
ATCATCCGCAATCTTTTCCTCCCCCTCGCCGTCTTCTTCTTCGAAGCAGC
GCGTCCTGCAGTTGGGACAGCTCGCGTTCACGGCTAACCAGCTGTCCACG
CACTGACAAATACACACACGGAGTTGGTAGGTTACGGGTGGAGGGTATTA
GAACAAAATATGCCAAGACTTTGTAGACTCATGGTCCCGGTAAAGGTTTC
GGATAAGACGTATGCATACGCTACCGCGCAGTGGAACAAGAATCGTCGTG
AAGGAATAGACGGAGCAAGGAAAGCGTGCTCGAAGTCGACTCATGAAACT
GGGGAATTGCACGGCGGGAAACCGAAAACAAAAACCTGTAGAGTATCTCA
TCATACGGAGAAAAACACAGCAGCCCTTTCTTGATCCTGACGAGCAGACA
AATCAACACACTTTACAGCACCCCTTGTCCATCGACCGTACATGTGTTGG
GAACAGAACGAAACCAAGCGACTGATGATCAGGAGGAATCTACGATATAA
CGCTACCTTTACACGAGAATGCCTCAGATGCCAAGTACCTCGGACACACA
ACGCTCAAGGCTTCACCTAAACAAGGAGGCATGATCCCGAAGACCAAATA
AATGTCCCGCAACCCACAAGAAAATTTTCAAACCACCCGATAGAACGCCT
CGCTACGCAGGCACAAAAACAGACCAATTTTCCATCTTCAAAACTTAACT
CCAGTGCACCGTGCGCTGTTACCATCTAACCCCGCCACCGACTGGTGCAA
CAGATCATACAGGTTTGTAGCTCGCTGAAGTCCTCGAGAGGCTTCAATAG
GGGGCAGCTTACCGTTTTGTGGAAGGCATGCCGGCAGGGAAGCTTTCTGA
GCTCGTCCTCTGCTTCATAGTCCACAAGACAAATGGCACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6517:1621..4862-

>mRNA_Ecto-sp13_S_contig6517.17319.1 ID=mRNA_Ecto-sp13_S_contig6517.17319.1|Name=mRNA_Ecto-sp13_S_contig6517.17319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6517:1621..4862- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGTGACAATTTTCGGGCCCCTCTGTCTACTACGAATGCATGAAAG
GATTGAGAATCAGGTGGCTGGTTCTCTGTTCATGTGCCAGCCTGCAGCTA
TTCGCTGGGCGCCAGACTACTACACCTCTCGGTTTATGCCATGTTTGATT
CATTTTATTAGCCGGGGTGGAGGGAGTGTTGCGAGATCATACAGGTTTGT
AGCTCGCTGA
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