mRNA_Ecto-sp13_S_contig6516.17317.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6516.17317.1
Unique NamemRNA_Ecto-sp13_S_contig6516.17317.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6516.17317.1 vs. uniprot
Match: D7G9C3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C3_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 1.170e-120
Identity = 243/321 (75.70%), Postives = 256/321 (79.75%), Query Frame = 1 
Query:    1 WQVLLPQHEKGEMSARLVADAYWMPATSPSDGSSASPCGNSAISALKPTKSKPNDVAPAAAADVPRTLERGSYGPENGDPCMSPLSQGGKPDRNLSADPVPVGKEGLTVNE----LVASGFPLGNGAAAGTIPESGSEKLGAGNRVSPAHGGSASLSTSSTSTTMTPAAGGDEKGTGXXXXXXXXXXXXXXXSSNSMVAAATVQLAARTLVSNTINRKHGRNTNGAVVLKATAWGIEPRVALDKKTHASIQHDVGGGG-AASAGVGARTGLDVAS--ASRIGAGGGRAGGGGQQFLKFEAWSTRASAASSPWAAHPSMRRQ 942
            ++VLLPQHEKGEMSARLVADAYWMP   PSDGSSASPCGNSAIS+LKPTKSK  DVAPAAAAD+PRT+E GSYGPENGDP MSPLSQGGKPDRN  +DPV VGKEGLT NE    LVASGFPLGNGAA  TIPESGS+K  AGNRVSPAHGG ASL                     XXXXXXXXXXXXXXX         TVQLAARTLVSNTINRKHGR TNGAVVLKATAWGIEPR+ALDKKTHAS+QHDVGGGG A+SAGV ARTGLDV +  A+R GAG        QQFLKFE+WSTRASAASSPWAAHPSMRRQ
Sbjct:  604 FKVLLPQHEKGEMSARLVADAYWMPVPLPSDGSSASPCGNSAISSLKPTKSKSKDVAPAAAADLPRTVEGGSYGPENGDPSMSPLSQGGKPDRNPCSDPVAVGKEGLTGNERTPKLVASGFPLGNGAAVATIPESGSDKPAAGNRVSPAHGGGASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVQLAARTLVSNTINRKHGRTTNGAVVLKATAWGIEPRLALDKKTHASLQHDVGGGGGASSAGVAARTGLDVGATGATRDGAGXXXXXXXXQQFLKFESWSTRASAASSPWAAHPSMRRQ 924
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6516.17317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9C3_ECTSI1.170e-12075.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6516contigEcto-sp13_S_contig6516:278..1989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score392.1
Seed ortholog evalue2.4e-106
Seed eggNOG ortholog2880.D7G9C3
Preferred nameDLEC1
Model size946
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
Exons2
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759
Cds size945
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.5866258-CDS-Ecto-sp13_S_contig6516:277..4171681463898.5866258-CDS-Ecto-sp13_S_contig6516:277..417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 278..417 +
1681463898.6026294-CDS-Ecto-sp13_S_contig6516:1183..19881681463898.6026294-CDS-Ecto-sp13_S_contig6516:1183..1988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6516 1184..1988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6516.17317.1prot_Ecto-sp13_S_contig6516.17317.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6516 278..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6516.17317.1

>prot_Ecto-sp13_S_contig6516.17317.1 ID=prot_Ecto-sp13_S_contig6516.17317.1|Name=mRNA_Ecto-sp13_S_contig6516.17317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=315bp
WQVLLPQHEKGEMSARLVADAYWMPATSPSDGSSASPCGNSAISALKPTK
SKPNDVAPAAAADVPRTLERGSYGPENGDPCMSPLSQGGKPDRNLSADPV
PVGKEGLTVNELVASGFPLGNGAAAGTIPESGSEKLGAGNRVSPAHGGSA
SLSTSSTSTTMTPAAGGDEKGTGGSDCGGSGGGSVTGRSSNSMVAAATVQ
LAARTLVSNTINRKHGRNTNGAVVLKATAWGIEPRVALDKKTHASIQHDV
GGGGAASAGVGARTGLDVASASRIGAGGGRAGGGGQQFLKFEAWSTRASA
ASSPWAAHPSMRRQA
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mRNA from alignment at Ecto-sp13_S_contig6516:278..1989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6516.17317.1 ID=mRNA_Ecto-sp13_S_contig6516.17317.1|Name=mRNA_Ecto-sp13_S_contig6516.17317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1712bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6516:278..1989+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCAGGTGCTCCTCCCCCAGCACGAAAAGGGAGAGATGTCGGCGAGGCT
TGTAGCAGATGCGTACTGGATGCCGGCGACATCGCCTTCGGACGGCTCCT
CTGCATCACCCTGCGGGAACTCGGCTATTTCCGCCCTAAAGTATGTGCAA
CTGCCAGGGACGTGACATGCCCCGAAAGATGTGTGTTCTCCCGATCGTTC
CTGCGGGCGCACTTTACTTGTTGTCGAAACACGTTTTTGACAACACTTGA
ACGCTTCTTGCCGAAACTATTCCCCGCCGTCGTAGGGCAAGGCGGACTGC
AACCGTTCGCGTGACTGACAGATACTATTGGTCCAAGCGGTAGTACTGGT
GTGGTTGACGGAAAATTAACCCGTAACTTCATCGCGTATACCGATGCTCC
CTGCTTTGCGTGGGCGTGTTGCCCACCGCTCACAGAGGCCGATTGTTTCT
TGTTTCTCGCCCTAGCTTTGTCTTAGATTTCTTATCACATTGCATGGGTC
CATAAAGCACAGACTATATACCCACTGAAGCCGATTCTCATGATGCGGCG
AAACTCTGGTATCATCTACTCTATCATGCCGCAACCGTCTGAAAATACCG
ATGGGACCACCATCACATAGGGCTCCTAATGGCGTTCCCCCGCTCACGTG
TTTGCGACCATGGGGCGTTTCATGTTGGGGTGTCCCATACGATCGTGATG
GGTCTGACTAATGCCATGGGGCGCGACCATCGTGTTGAACGTGCTGCTCA
CCGGGGGGCTGTCCCACCATTGTTTCATCACGGCAAGAAAAACCGTGCGT
TTGAAGTTGAGAAGGGTTTTCATATGGTTGTGGGCAATTTTCAGCGATGT
TTACGCACTAACTTGGCAGGCGAACCCACCCTGTGCCTTTGAATCGAATC
GAGCAGGCCTACCAAATCCAAGCCCAACGACGTTGCTCCTGCCGCTGCTG
CCGACGTCCCGCGCACGTTGGAGCGGGGATCCTACGGACCGGAGAATGGG
GACCCCTGCATGTCTCCCCTCTCGCAGGGTGGGAAACCCGACCGAAATCT
AAGCGCCGACCCCGTCCCTGTCGGAAAAGAGGGCCTCACCGTGAACGAGC
TGGTCGCGTCCGGATTCCCTCTGGGGAATGGTGCAGCTGCCGGAACCATT
CCGGAGAGCGGCAGCGAAAAGCTCGGGGCGGGCAACCGCGTTTCTCCGGC
GCATGGCGGCAGCGCTTCCCTGAGCACCTCTTCGACGAGCACGACGATGA
CACCTGCTGCCGGCGGCGACGAAAAAGGAACAGGGGGTAGCGACTGTGGC
GGCAGCGGCGGCGGTAGTGTCACCGGGCGTTCGTCCAACTCAATGGTAGC
CGCGGCCACGGTGCAGCTCGCCGCAAGGACGCTCGTGAGCAACACGATCA
ACCGGAAGCACGGGAGAAACACCAATGGAGCCGTCGTGCTCAAGGCCACC
GCCTGGGGGATCGAGCCCCGCGTAGCCCTCGACAAGAAGACGCACGCCTC
CATCCAGCATGACGTTGGCGGCGGTGGTGCTGCGTCTGCCGGTGTTGGGG
CCAGGACTGGGCTTGACGTCGCGAGTGCTAGTCGAATTGGTGCCGGCGGT
GGAAGAGCAGGAGGAGGGGGGCAACAGTTCCTTAAGTTTGAAGCCTGGTC
GACGAGAGCATCGGCCGCGTCTTCGCCCTGGGCAGCTCATCCGTCCATGC
GGCGACAGGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6516:278..1989+

>mRNA_Ecto-sp13_S_contig6516.17317.1 ID=mRNA_Ecto-sp13_S_contig6516.17317.1|Name=mRNA_Ecto-sp13_S_contig6516.17317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6516:278..1989+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCAGGTGCTCCTCCCCCAGCACGAAAAGGGAGAGATGTCGGCGAGGCT
TGTAGCAGATGCGTACTGGATGCCGGCGACATCGCCTTCGGACGGCTCCT
CTGCATCACCCTGCGGGAACTCGGCTATTTCCGCCCTAAAGCCTACCAAA
TCCAAGCCCAACGACGTTGCTCCTGCCGCTGCTGCCGACGTCCCGCGCAC
GTTGGAGCGGGGATCCTACGGACCGGAGAATGGGGACCCCTGCATGTCTC
CCCTCTCGCAGGGTGGGAAACCCGACCGAAATCTAAGCGCCGACCCCGTC
CCTGTCGGAAAAGAGGGCCTCACCGTGAACGAGCTGGTCGCGTCCGGATT
CCCTCTGGGGAATGGTGCAGCTGCCGGAACCATTCCGGAGAGCGGCAGCG
AAAAGCTCGGGGCGGGCAACCGCGTTTCTCCGGCGCATGGCGGCAGCGCT
TCCCTGAGCACCTCTTCGACGAGCACGACGATGACACCTGCTGCCGGCGG
CGACGAAAAAGGAACAGGGGGTAGCGACTGTGGCGGCAGCGGCGGCGGTA
GTGTCACCGGGCGTTCGTCCAACTCAATGGTAGCCGCGGCCACGGTGCAG
CTCGCCGCAAGGACGCTCGTGAGCAACACGATCAACCGGAAGCACGGGAG
AAACACCAATGGAGCCGTCGTGCTCAAGGCCACCGCCTGGGGGATCGAGC
CCCGCGTAGCCCTCGACAAGAAGACGCACGCCTCCATCCAGCATGACGTT
GGCGGCGGTGGTGCTGCGTCTGCCGGTGTTGGGGCCAGGACTGGGCTTGA
CGTCGCGAGTGCTAGTCGAATTGGTGCCGGCGGTGGAAGAGCAGGAGGAG
GGGGGCAACAGTTCCTTAAGTTTGAAGCCTGGTCGACGAGAGCATCGGCC
GCGTCTTCGCCCTGGGCAGCTCATCCGTCCATGCGGCGACAGGCG
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