mRNA_Ecto-sp13_S_contig6513.17314.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6513.17314.1
Unique NamemRNA_Ecto-sp13_S_contig6513.17314.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6513.17314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6513contigEcto-sp13_S_contig6513:316..1545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1230
Hectar predicted targeting categorysignal peptide
Exons1
Cds size780
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.3661728-UTR-Ecto-sp13_S_contig6513:315..7651681463898.3661728-UTR-Ecto-sp13_S_contig6513:315..765Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6513 316..765 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.3761413-CDS-Ecto-sp13_S_contig6513:765..15451681463898.3761413-CDS-Ecto-sp13_S_contig6513:765..1545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6513 766..1545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6513.17314.1prot_Ecto-sp13_S_contig6513.17314.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6513 766..1545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6513.17314.1

>prot_Ecto-sp13_S_contig6513.17314.1 ID=prot_Ecto-sp13_S_contig6513.17314.1|Name=mRNA_Ecto-sp13_S_contig6513.17314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MWLGGLVLFAICGAVLCKCVRLLSVSFSIVFASRSLLLLGGERELRIHDV
AIFAGVREGEGERAGTEGPRRVCEEVRLCDYLPVLLQGRLIGLWCCIRGE
CCYCWKGRGDCTCGAMHHPPRVGLPAAETPVQNKREHKLLRICVSEVGAC
SLVVVVVALLVRSIGQLIDVDGSMLSVFVAPVSCLSTLGHCDTRLSCTER
VHAGKGQPCYLAGRWEVCIGESASAERVKHYQWVCHFLPLVPFFRFSCVR
NVETVNAVG*
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mRNA from alignment at Ecto-sp13_S_contig6513:316..1545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6513.17314.1 ID=mRNA_Ecto-sp13_S_contig6513.17314.1|Name=mRNA_Ecto-sp13_S_contig6513.17314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1230bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6513:316..1545+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGGTGTTGCTGTTGTTGGTTTCTGTCGATCGGTGCATAAATCGTACG
TGGCGTTTTTTTTTCTTTTTTTTTGGCGGAGACGCTGTCCGTCTGTTGTT
TTTGTTGTGTTCATGTCTCTTTCGTGTCTCTTCTCCTCTCTTTCCTCGTA
GTACTCTACTCTTCTTTTGTGAAGTCTCTGTATTCTGCACGGACACGATT
GAGATGGAAAAGGGAAGGGCCGCAGCAGCAGAGTAGATCAACGAGAGGAC
TTGATCTCACAAGTGTTGCGAGGCATCGAGTGCATGTAGGGGAGAGAAGC
AGGGGTAGAGAGTACAGCGGCAGTTTTTGTCGATTTCGTCTTTGTTTCGG
TTTGCGTATCGCCTCTTCAGTTCGTAGTGGTATGGTAGAGGCTAAGGTCG
GTACAGTACAGTACGAGTAGGGGAAAGAGAGCAGCACGTCGCTGGCTAAG
ATGTGGCTGGGCGGCTTGGTTTTGTTTGCTATTTGCGGTGCGGTACTTTG
CAAGTGCGTGCGTTTGCTGTCTGTGTCGTTTTCTATAGTGTTTGCGTCAC
GCTCTCTTTTGTTGTTGGGGGGAGAAAGAGAGCTGCGCATTCACGACGTT
GCAATATTTGCAGGTGTCAGAGAGGGGGAGGGGGAGAGGGCCGGGACAGA
AGGTCCCCGCCGTGTTTGTGAAGAAGTAAGACTTTGCGACTACTTGCCGG
TCCTCCTGCAAGGAAGGTTAATTGGCCTGTGGTGCTGTATAAGAGGCGAG
TGCTGCTACTGTTGGAAGGGGCGGGGGGATTGCACATGTGGCGCAATGCA
CCACCCGCCCCGCGTTGGCCTACCAGCTGCCGAGACTCCGGTACAAAACA
AAAGAGAACACAAACTATTGCGCATTTGTGTTTCCGAGGTGGGAGCTTGC
AGCCTAGTCGTCGTTGTCGTAGCTCTCCTGGTGCGATCGATCGGGCAATT
GATTGATGTTGATGGGAGCATGTTGTCGGTGTTTGTTGCTCCTGTCTCCT
GTCTCTCAACGTTGGGACATTGCGACACACGTCTTTCGTGTACGGAAAGA
GTGCACGCGGGCAAGGGGCAGCCTTGCTACCTTGCCGGGAGGTGGGAGGT
ATGCATAGGCGAAAGCGCCTCGGCTGAACGTGTCAAACATTATCAATGGG
TGTGTCATTTTTTACCTCTTGTTCCTTTTTTTCGATTCTCATGTGTCAGA
AATGTGGAGACAGTGAACGCGGTGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6513:316..1545+

>mRNA_Ecto-sp13_S_contig6513.17314.1 ID=mRNA_Ecto-sp13_S_contig6513.17314.1|Name=mRNA_Ecto-sp13_S_contig6513.17314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6513:316..1545+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGCTGGGCGGCTTGGTTTTGTTTGCTATTTGCGGTGCGGTACTTTG
CAAGTGCGTGCGTTTGCTGTCTGTGTCGTTTTCTATAGTGTTTGCGTCAC
GCTCTCTTTTGTTGTTGGGGGGAGAAAGAGAGCTGCGCATTCACGACGTT
GCAATATTTGCAGGTGTCAGAGAGGGGGAGGGGGAGAGGGCCGGGACAGA
AGGTCCCCGCCGTGTTTGTGAAGAAGTAAGACTTTGCGACTACTTGCCGG
TCCTCCTGCAAGGAAGGTTAATTGGCCTGTGGTGCTGTATAAGAGGCGAG
TGCTGCTACTGTTGGAAGGGGCGGGGGGATTGCACATGTGGCGCAATGCA
CCACCCGCCCCGCGTTGGCCTACCAGCTGCCGAGACTCCGGTACAAAACA
AAAGAGAACACAAACTATTGCGCATTTGTGTTTCCGAGGTGGGAGCTTGC
AGCCTAGTCGTCGTTGTCGTAGCTCTCCTGGTGCGATCGATCGGGCAATT
GATTGATGTTGATGGGAGCATGTTGTCGGTGTTTGTTGCTCCTGTCTCCT
GTCTCTCAACGTTGGGACATTGCGACACACGTCTTTCGTGTACGGAAAGA
GTGCACGCGGGCAAGGGGCAGCCTTGCTACCTTGCCGGGAGGTGGGAGGT
ATGCATAGGCGAAAGCGCCTCGGCTGAACGTGTCAAACATTATCAATGGG
TGTGTCATTTTTTACCTCTTGTTCCTTTTTTTCGATTCTCATGTGTCAGA
AATGTGGAGACAGTGAACGCGGTGGGGTGA
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