mRNA_Ecto-sp13_S_contig65110.17311.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig65110.17311.1
Unique Name	mRNA_Ecto-sp13_S_contig65110.17311.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A6H5JMX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX8_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.310e-33
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1

Query:    7 GDRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG 174
            GDRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG
Sbjct:   14 GDRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG 69

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A6B0WES6_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0WES6_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 1.270e-17
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1

Query:   10 DRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGE 177
            DR+AL+ALYH TGGP+W N + W SD PL  WYGVTT+S GRVV LEL  N+L GE
Sbjct:  365 DREALVALYHATGGPNWRNDANWLSDEPLRRWYGVTTDSGGRVVRLELSSNDLSGE 420

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A6L7WC15_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7WC15_9CHLR)

HSP 1 Score: 84.3 bits (207), Expect = 1.270e-17
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1

Query:   10 DRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGE 177
            DR+AL+ALYH TGGP+W N + W SD PL  WYGVTT+S GRVV LEL  N+L GE
Sbjct:  365 DREALVALYHATGGPNWRNDANWLSDEPLRRWYGVTTDSGGRVVRLELSSNDLSGE 420

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A6L8E604_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L8E604_9CHLR)

HSP 1 Score: 80.5 bits (197), Expect = 2.860e-16
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1

Query:   10 DRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQGE 177
            DR+AL+ALYH TGGP+W N + W SD PL  WYGV T+  GRVV LEL  N+L GE
Sbjct:  280 DREALVALYHATGGPAWRNDANWLSDEPLRRWYGVATDPGGRVVRLELSSNDLSGE 335

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A6B0XLV3_9BACT (Fibronectin type-III domain-containing protein n=4 Tax=Holophagales bacterium TaxID=2478486 RepID=A0A6B0XLV3_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 6.510e-15
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1

Query:   10 DRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG 174
            DR+AL+ALY  T GP+W N   W S+RP +EWYGVTTNSAGRV  LEL  N L+G
Sbjct:  970 DRNALIALYRATDGPNWTNNENWLSNRPPDEWYGVTTNSAGRVTWLELSDNGLKG 1024

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A7X3WBP1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WBP1_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 2.270e-14
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1

Query:    4 TGDRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG 174
            T D++AL+ALYH TGGP+W N   W S++ + +W+GVTTN AGRV  L L  NNL G
Sbjct:  819 TVDKNALIALYHATGGPNWENNEHWLSNQSIGQWFGVTTNDAGRVEQLSLENNNLDG 875

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.310e-14
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1

Query:   10 DRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG 174
            DRDAL+ALY+ T G  W     W +  PL++W+GV  N  GRVVALEL  NNLQG
Sbjct:    5 DRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQG 59

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A6N8ZGC2_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N8ZGC2_9CHLR)

HSP 1 Score: 74.3 bits (181), Expect = 4.220e-14
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:    4 TGDRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALEL 153
            T DR+AL+AL++ TGGP W + + W SDRPL+EWYGVT N+ GRV+AL+L
Sbjct:  217 TADRNALIALFNATGGPDWTDNTNWLSDRPLDEWYGVTANANGRVIALKL 266

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A7X3UT31_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3UT31_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 4.240e-14
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1

Query:   10 DRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG 174
            DRDAL+ALYH T GP+W N + W SD+P+ +WYGV+T++ GRV  L L  N L G
Sbjct:  680 DRDALVALYHATDGPNWTNNTNWLSDKPIGDWYGVSTDADGRVTWLALELNRLNG 734

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BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Match: A0A7X3W7R3_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3W7R3_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 4.240e-14
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1

Query:   10 DRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALELRYNNLQG 174
            DRDAL+ALYH T GP+W N + W SD+P+ +WYGV+T++ GRV  L L  N L G
Sbjct:  966 DRDALVALYHATDGPNWTNNTNWLSDKPIGDWYGVSTDADGRVTWLALELNRLNG 1020

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig65110.17311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JMX8_9PHAE	1.310e-33	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6B0WES6_9CHLR	1.270e-17	66.07	Uncharacterized protein (Fragment) n=1 Tax=Chlorof...	[more]
A0A6L7WC15_9CHLR	1.270e-17	66.07	Uncharacterized protein n=1 Tax=Chloroflexi bacter...	[more]
A0A6L8E604_9CHLR	2.860e-16	62.50	Uncharacterized protein (Fragment) n=1 Tax=Chlorof...	[more]
A0A6B0XLV3_9BACT	6.510e-15	63.64	Fibronectin type-III domain-containing protein n=4...	[more]
A0A7X3WBP1_9BACT	2.270e-14	56.14	Uncharacterized protein n=1 Tax=Gemmatimonadetes b...	[more]
A0A6H5JX36_9PHAE	3.310e-14	56.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6N8ZGC2_9CHLR	4.220e-14	62.00	Uncharacterized protein n=1 Tax=Chloroflexi bacter...	[more]
A0A7X3UT31_9BACT	4.240e-14	56.36	Uncharacterized protein n=2 Tax=Gemmatimonadetes b...	[more]
A0A7X3W7R3_9BACT	4.240e-14	56.36	Uncharacterized protein n=1 Tax=Gemmatimonadetes b...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig65110	contig	Ecto-sp13_S_contig65110:522..698 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Bacteria
Stop	0
Start	0
Seed ortholog score	71.2
Seed ortholog evalue	1.8e-10
Seed eggNOG ortholog	1203611.KB894541_gene1409
Model size	177
KEGG ko	ko:K07126,ko:K09973
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	Putative binding domain, N-terminal
EggNOG OGs	2FRZI@200643,4NQDX@976,COG4886@1,COG4886@2,COG5492@1,COG5492@2
Cds size	177
COG Functional cat.	N
Best tax level	Bacteroidia
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463898.193656-CDS-Ecto-sp13_S_contig65110:521..698	1681463898.193656-CDS-Ecto-sp13_S_contig65110:521..698	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig65110 522..698 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig65110.17311.1	prot_Ecto-sp13_S_contig65110.17311.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig65110 522..698 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig65110:522..698-
coding sequence from alignment at Ecto-sp13_S_contig65110:522..698-

protein sequence of mRNA_Ecto-sp13_S_contig65110.17311.1

>prot_Ecto-sp13_S_contig65110.17311.1 ID=prot_Ecto-sp13_S_contig65110.17311.1|Name=mRNA_Ecto-sp13_S_contig65110.17311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
RTGDRDALLALYHGTGGPSWHNRSGWGSDRPLNEWYGVTTNSAGRVVALE
LRYNNLQGE

mRNA from alignment at Ecto-sp13_S_contig65110:522..698-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig65110.17311.1 ID=mRNA_Ecto-sp13_S_contig65110.17311.1|Name=mRNA_Ecto-sp13_S_contig65110.17311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65110:522..698- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCACAGGTGATCGAGACGCCCTGTTGGCCCTCTACCACGGCACGGGAGG
CCCCTCTTGGCACAACAGATCAGGCTGGGGGTCGGACAGGCCGCTCAATG
AGTGGTACGGCGTTACCACGAACTCGGCGGGACGGGTCGTGGCGCTGGAG
CTGAGGTACAACAACCTCCAGGGTGAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65110:522..698-

>mRNA_Ecto-sp13_S_contig65110.17311.1 ID=mRNA_Ecto-sp13_S_contig65110.17311.1|Name=mRNA_Ecto-sp13_S_contig65110.17311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65110:522..698- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCACAGGTGATCGAGACGCCCTGTTGGCCCTCTACCACGGCACGGGAGG
CCCCTCTTGGCACAACAGATCAGGCTGGGGGTCGGACAGGCCGCTCAATG
AGTGGTACGGCGTTACCACGAACTCGGCGGGACGGGTCGTGGCGCTGGAG
CTGAGGTACAACAACCTCCAGGGTGAG