mRNA_Ecto-sp13_S_contig6511.17309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6511.17309.1
Unique NamemRNA_Ecto-sp13_S_contig6511.17309.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6511.17309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6511contigEcto-sp13_S_contig6511:3910..4752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size843
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.1475215-UTR-Ecto-sp13_S_contig6511:3909..40971681463898.1475215-UTR-Ecto-sp13_S_contig6511:3909..4097Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6511 3910..4097 +
1681463898.1682472-UTR-Ecto-sp13_S_contig6511:4523..47521681463898.1682472-UTR-Ecto-sp13_S_contig6511:4523..4752Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6511 4524..4752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463898.1573503-CDS-Ecto-sp13_S_contig6511:4097..45231681463898.1573503-CDS-Ecto-sp13_S_contig6511:4097..4523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6511 4098..4523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6511.17309.1prot_Ecto-sp13_S_contig6511.17309.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6511 4098..4523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6511.17309.1

>prot_Ecto-sp13_S_contig6511.17309.1 ID=prot_Ecto-sp13_S_contig6511.17309.1|Name=mRNA_Ecto-sp13_S_contig6511.17309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MAERLRKEIAVRVGEMAPGAIDFFNHFLVFRRTPGAISPNGAIAPTPAHL
SDPGAEVRINNLFQVGFEGVPVRSLRPVQCPMQYTQRPARYYCLHADRCC
LFASEDWYECRHPKKVDLCGVPYVLQSVGWYACSSFPCSER*
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mRNA from alignment at Ecto-sp13_S_contig6511:3910..4752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6511.17309.1 ID=mRNA_Ecto-sp13_S_contig6511.17309.1|Name=mRNA_Ecto-sp13_S_contig6511.17309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6511:3910..4752+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGAGGACGAGACGGTCGGGGTATCATACGTTTCATACTAATACTGCGT
ATTGTCGGAGGGGGGGAGGGGGATTGGAGTTGGTCTGGTCGCCAACGCTA
AGTCAAGTTGGTGCAAAACACACGTGTTGGTGTGTCGGCGTGGGGGCTTG
CTCGGATCGGCTGTAGTACATAATATTCACAAATACCGATGGCAGAAAGA
CTCAGAAAAGAGATTGCCGTACGAGTCGGAGAGATGGCACCGGGTGCGAT
TGATTTTTTTAATCATTTTCTTGTGTTTCGTCGCACCCCCGGTGCGATCT
CTCCGAACGGTGCCATCGCTCCGACCCCGGCGCATCTCTCCGACCCCGGT
GCGGAAGTGCGAATAAATAATCTCTTTCAAGTAGGTTTTGAAGGCGTACC
GGTGCGATCTCTCCGACCAGTGCAATGCCCAATGCAATACACGCAGCGGC
CTGCCCGATATTATTGTTTGCACGCAGACCGATGCTGTCTCTTTGCCTCT
GAGGATTGGTACGAGTGTAGGCATCCAAAAAAAGTAGACTTGTGCGGCGT
ACCGTATGTACTACAGAGTGTAGGCTGGTACGCGTGTAGCAGCTTTCCAT
GCAGCGAGCGGTGATAGGTGTAAACGCGAGTTTGGCTATATTGCGTGACA
AAGACAGCAAACGATGTTATTTTGTTGGAGTAAGCATTGGTACATACAGT
ACCAGGCAATCTCCAGCTTTCGTTTCGGTCTTCCTGTACGAATTCCAGTA
CGCAAGAAGCAACACGTTACCTTCTCTTCTAGTAGGTGGGGGAAGGTCAT
GGCTTGTACGTTGTGCACCTGCCGGTCTCGTTATTTTTCGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6511:3910..4752+

>mRNA_Ecto-sp13_S_contig6511.17309.1 ID=mRNA_Ecto-sp13_S_contig6511.17309.1|Name=mRNA_Ecto-sp13_S_contig6511.17309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6511:3910..4752+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGAAAGACTCAGAAAAGAGATTGCCGTACGAGTCGGAGAGATGGC
ACCGGGTGCGATTGATTTTTTTAATCATTTTCTTGTGTTTCGTCGCACCC
CCGGTGCGATCTCTCCGAACGGTGCCATCGCTCCGACCCCGGCGCATCTC
TCCGACCCCGGTGCGGAAGTGCGAATAAATAATCTCTTTCAAGTAGGTTT
TGAAGGCGTACCGGTGCGATCTCTCCGACCAGTGCAATGCCCAATGCAAT
ACACGCAGCGGCCTGCCCGATATTATTGTTTGCACGCAGACCGATGCTGT
CTCTTTGCCTCTGAGGATTGGTACGAGTGTAGGCATCCAAAAAAAGTAGA
CTTGTGCGGCGTACCGTATGTACTACAGAGTGTAGGCTGGTACGCGTGTA
GCAGCTTTCCATGCAGCGAGCGGTGA
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