mRNA_Ecto-sp13_S_contig65029.17296.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65029.17296.1
Unique NamemRNA_Ecto-sp13_S_contig65029.17296.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65029.17296.1 vs. uniprot
Match: A0A6H5JR91_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR91_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.440e-22
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 MSQEGYLAGASIFRASQTGDILRVKELISRGVDVNRTNAYGCVALHYA 144
            MSQEGYLAGASIFRASQTGDILRVKELISRGVDVNRTNAYGCVALHYA
Sbjct:  187 MSQEGYLAGASIFRASQTGDILRVKELISRGVDVNRTNAYGCVALHYA 234
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BLAST of mRNA_Ecto-sp13_S_contig65029.17296.1 vs. uniprot
Match: D8LM05_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM05_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 9.340e-22
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 MSQEGYLAGASIFRASQTGDILRVKELISRGVDVNRTNAYGCVALHYA 144
            MSQEGYLAGASIFRASQ GDILRVKELISRGVDVNRTNAYGCVALHYA
Sbjct:  115 MSQEGYLAGASIFRASQIGDILRVKELISRGVDVNRTNAYGCVALHYA 162
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BLAST of mRNA_Ecto-sp13_S_contig65029.17296.1 vs. uniprot
Match: UPI000C77BCAA (uncharacterized protein LOC111709147 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77BCAA)

HSP 1 Score: 48.5 bits (114), Expect = 3.270e-5
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    4 SQEGYLAGASIFRASQTGDILRVKELISRGVDVNRTNAYGCVALHYA 144
            ++ G +    I+R++  GDI+RVK+LI +G DVN  N  GCV L YA
Sbjct:    3 AESGSVETCGIWRSADRGDIIRVKQLIQQGCDVNSRNCLGCVPLMYA 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65029.17296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JR91_9PHAE1.440e-22100.00PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LM05_ECTSI9.340e-2297.92Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
UPI000C77BCAA3.270e-546.81uncharacterized protein LOC111709147 n=1 Tax=Euryt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65029contigEcto-sp13_S_contig65029:164..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463897.000811-CDS-Ecto-sp13_S_contig65029:163..3071681463897.000811-CDS-Ecto-sp13_S_contig65029:163..307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65029 164..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65029.17296.1prot_Ecto-sp13_S_contig65029.17296.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65029 164..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65029.17296.1

>prot_Ecto-sp13_S_contig65029.17296.1 ID=prot_Ecto-sp13_S_contig65029.17296.1|Name=mRNA_Ecto-sp13_S_contig65029.17296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MSQEGYLAGASIFRASQTGDILRVKELISRGVDVNRTNAYGCVALHYA
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mRNA from alignment at Ecto-sp13_S_contig65029:164..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65029.17296.1 ID=mRNA_Ecto-sp13_S_contig65029.17296.1|Name=mRNA_Ecto-sp13_S_contig65029.17296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65029:164..307+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGGAGGGCTACCTGGCAGGCGCCAGCATCTTTCGCGCGAGCCA
GACCGGCGACATACTCCGCGTGAAGGAGTTAATATCGAGGGGCGTTGACG
TCAACCGCACCAACGCGTACGGGTGCGTGGCCCTGCACTACGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65029:164..307+

>mRNA_Ecto-sp13_S_contig65029.17296.1 ID=mRNA_Ecto-sp13_S_contig65029.17296.1|Name=mRNA_Ecto-sp13_S_contig65029.17296.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65029:164..307+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCAGGAGGGCTACCTGGCAGGCGCCAGCATCTTTCGCGCGAGCCA
GACCGGCGACATACTCCGCGTGAAGGAGTTAATATCGAGGGGCGTTGACG
TCAACCGCACCAACGCGTACGGGTGCGTGGCCCTGCACTACGCC
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