mRNA_Ecto-sp13_S_contig65014.17293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig65014.17293.1
Unique NamemRNA_Ecto-sp13_S_contig65014.17293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig65014.17293.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.010e-13
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    4 GSRSEDHEVGYDNTDDCLRDVMDYTSYLDLDSPTSHLSVIPAATENNELQQLVSSIQEVAGQDLVANNNGPTSPNKESDHEDSSPEDENTPAP 282
            G+RSED E GYDN           TSYLDL+SPTSHLSVIP+ ++ +++QQLVS+IQEV  QDL  + N   SP+     + SS  +++ P P
Sbjct:  297 GNRSEDDEFGYDNN----------TSYLDLESPTSHLSVIPSTSDTSDMQQLVSNIQEVTSQDLRTSKNETASPSGPEHDKSSSEGEQSAPLP 379
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig65014.17293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBU1_9PHAE1.010e-1348.39CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig65014contigEcto-sp13_S_contig65014:351..688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.8808737-CDS-Ecto-sp13_S_contig65014:350..6861681463896.8808737-CDS-Ecto-sp13_S_contig65014:350..686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig65014 351..686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig65014.17293.1prot_Ecto-sp13_S_contig65014.17293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig65014 351..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig65014.17293.1

>prot_Ecto-sp13_S_contig65014.17293.1 ID=prot_Ecto-sp13_S_contig65014.17293.1|Name=mRNA_Ecto-sp13_S_contig65014.17293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
KGSRSEDHEVGYDNTDDCLRDVMDYTSYLDLDSPTSHLSVIPAATENNEL
QQLVSSIQEVAGQDLVANNNGPTSPNKESDHEDSSPEDENTPAPNPAHVT
RRTLRSSTQAPD
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mRNA from alignment at Ecto-sp13_S_contig65014:351..688+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig65014.17293.1 ID=mRNA_Ecto-sp13_S_contig65014.17293.1|Name=mRNA_Ecto-sp13_S_contig65014.17293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=338bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65014:351..688+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGCAGCAGATCTGAAGATCACGAGGTCGGATACGACAATACCGACGA
CTGTCTGCGCGATGTTATGGACTACACGTCGTACCTAGACCTCGACTCAC
CGACGAGCCATCTTTCGGTCATCCCTGCAGCCACGGAGAACAACGAGCTG
CAACAACTCGTCAGCAGCATTCAAGAGGTGGCCGGTCAAGACCTTGTCGC
TAACAACAACGGGCCTACGTCACCGAATAAAGAATCAGACCATGAAGATT
CGTCACCGGAGGACGAGAACACACCCGCACCTAATCCTGCTCACGTCACT
AGACGTACCCTTCGTTCCAGCACACAAGCACCTGATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig65014:351..688+

>mRNA_Ecto-sp13_S_contig65014.17293.1 ID=mRNA_Ecto-sp13_S_contig65014.17293.1|Name=mRNA_Ecto-sp13_S_contig65014.17293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig65014:351..688+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGCAGCAGATCTGAAGATCACGAGGTCGGATACGACAATACCGACGA
CTGTCTGCGCGATGTTATGGACTACACGTCGTACCTAGACCTCGACTCAC
CGACGAGCCATCTTTCGGTCATCCCTGCAGCCACGGAGAACAACGAGCTG
CAACAACTCGTCAGCAGCATTCAAGAGGTGGCCGGTCAAGACCTTGTCGC
TAACAACAACGGGCCTACGTCACCGAATAAAGAATCAGACCATGAAGATT
CGTCACCGGAGGACGAGAACACACCCGCACCTAATCCTGCTCACGTCACT
AGACGTACCCTTCGTTCCAGCACACAAGCACCTGAT
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