mRNA_Ecto-sp13_S_contig6499.17287.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6499.17287.1
Unique NamemRNA_Ecto-sp13_S_contig6499.17287.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6499.17287.1 vs. uniprot
Match: A0A6H5KFI7_9PHAE (Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.970e-19
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -2 
Query:  204 AVCLETQHFPAAVNHEGWVESVLLQPGGKYLERTRHVFTVQGRS 335
            AVCLETQHFPAAVNHEGW+ESVLL+PG KYLERTRHVFTVQGRS
Sbjct:  346 AVCLETQHFPAAVNHEGWMESVLLKPGEKYLERTRHVFTVQGRS 389
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BLAST of mRNA_Ecto-sp13_S_contig6499.17287.1 vs. uniprot
Match: A0A2E8SRF1_9BACT (Galactose-1-epimerase (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E8SRF1_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 9.530e-5
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = -2 
Query:  213 AVCLETQHFPAAVNHEGWVESVLLQPGGKYLERTRHVFTVQ 335
            A+CLETQHFP +VNHEG+  S +L+PG  Y   T H F+ +
Sbjct:  118 ALCLETQHFPDSVNHEGF-PSTILKPGDTYSTTTVHRFSAE 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6499.17287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFI7_9PHAE1.970e-1993.18Aldose 1-epimerase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A2E8SRF1_9BACT9.530e-553.66Galactose-1-epimerase (Fragment) n=1 Tax=Verrucomi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6499contigEcto-sp13_S_contig6499:4835..5170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size336
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_001090.1
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.3033235-CDS-Ecto-sp13_S_contig6499:4834..51281681463896.3033235-CDS-Ecto-sp13_S_contig6499:4834..5128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6499 4835..5128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.341732-UTR-Ecto-sp13_S_contig6499:5128..51701681463896.341732-UTR-Ecto-sp13_S_contig6499:5128..5170Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6499 5129..5170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6499.17287.1prot_Ecto-sp13_S_contig6499.17287.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6499 4835..5128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6499.17287.1

>prot_Ecto-sp13_S_contig6499.17287.1 ID=prot_Ecto-sp13_S_contig6499.17287.1|Name=mRNA_Ecto-sp13_S_contig6499.17287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MRDPCTSSTDNAYAFQARDTSKHFHRSSGLVHPTPAIDDDTGTHSLGLLV
IYRTLCRRCSKPALRRAYDLPCTVKTCLVLSRYFPPGCSKTDSTQPS*
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mRNA from alignment at Ecto-sp13_S_contig6499:4835..5170+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6499.17287.1 ID=mRNA_Ecto-sp13_S_contig6499.17287.1|Name=mRNA_Ecto-sp13_S_contig6499.17287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6499:4835..5170+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGACCCGTGTACGAGCTCTACAGACAACGCCTACGCTTTTCAGGC
CCGAGACACTTCAAAACACTTCCACAGAAGTAGTGGACTGGTCCACCCCA
CGCCCGCCATTGACGATGACACAGGTACACACAGCCTCGGGCTGCTCGTG
ATCTACAGAACGCTCTGCCGTCGATGTTCGAAGCCCGCGCTTCGACGGGC
CTACGATCTACCCTGCACGGTGAAGACGTGTCTGGTCCTCTCCAGATACT
TTCCCCCGGGCTGCAGCAAGACCGATTCCACCCAACCCTCATGATTGACC
GCGGCGGGGAAGTGCTGGGTTTCCAAACACACGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6499:4835..5170+

>mRNA_Ecto-sp13_S_contig6499.17287.1 ID=mRNA_Ecto-sp13_S_contig6499.17287.1|Name=mRNA_Ecto-sp13_S_contig6499.17287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6499:4835..5170+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGACCCGTGTACGAGCTCTACAGACAACGCCTACGCTTTTCAGGC
CCGAGACACTTCAAAACACTTCCACAGAAGTAGTGGACTGGTCCACCCCA
CGCCCGCCATTGACGATGACACAGGTACACACAGCCTCGGGCTGCTCGTG
ATCTACAGAACGCTCTGCCGTCGATGTTCGAAGCCCGCGCTTCGACGGGC
CTACGATCTACCCTGCACGGTGAAGACGTGTCTGGTCCTCTCCAGATACT
TTCCCCCGGGCTGCAGCAAGACCGATTCCACCCAACCCTCATGA
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