mRNA_Ecto-sp13_S_contig64985.17286.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64985.17286.1
Unique NamemRNA_Ecto-sp13_S_contig64985.17286.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64985.17286.1 vs. uniprot
Match: A0A6H5L2P2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.100e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 KLFLCSDEGVVVTKEHIDMVVGRLDLEGKFAGDNRAGVPGQLHRISVMRSRE 156
            KLFLCSD+ VVVTKEHIDMVVGRLDLE KFAGDNRAGVPGQLHRISVMRSRE
Sbjct:  562 KLFLCSDKSVVVTKEHIDMVVGRLDLEDKFAGDNRAGVPGQLHRISVMRSRE 613
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BLAST of mRNA_Ecto-sp13_S_contig64985.17286.1 vs. uniprot
Match: D7FII7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.230e-13
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:   55 MVVGRLDLEGKFAGDNRAGVPGQLHRISVMRSRE 156
            MVVGRLDLEGKFAGDNRAGVPGQLHRISVMR RE
Sbjct:    1 MVVGRLDLEGKFAGDNRAGVPGQLHRISVMRGRE 34
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BLAST of mRNA_Ecto-sp13_S_contig64985.17286.1 vs. uniprot
Match: D7G6R4_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.650e-9
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 KLFLCSDEGVVVTKEHIDMVVGRLDLEGKFAGDNRAGVPGQLHRISVMRSR 153
            K++LC D GV+VT+ H++ VVG+L+  G F  DN AG  G LHR+ VMR +
Sbjct:   18 KVYLCKDRGVLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDK 68
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BLAST of mRNA_Ecto-sp13_S_contig64985.17286.1 vs. uniprot
Match: A0A6H5JW61_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW61_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.750e-9
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 KLFLCSDEGVVVTKEHIDMVVGRLDLEGKFAGDNRAGVPGQLHRISVMRSR 153
            K++LC D GV+VT+ H++ VVG+L+  G F  DN AG  G LHR+ VMR +
Sbjct: 1625 KVYLCKDRGVLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDK 1675
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BLAST of mRNA_Ecto-sp13_S_contig64985.17286.1 vs. uniprot
Match: A0A3M1EVH3_9CHLR (AAA family ATPase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1EVH3_9CHLR)

HSP 1 Score: 48.5 bits (114), Expect = 3.910e-5
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   10 LCSDEGVVVTKEHIDMVVGRLDLEGKFAGDNRAGVPGQLHRISVMRSR 153
            + SDE V  T E ID VV R+   G F GDNRAG+P  LHRIS +R+R
Sbjct:   53 ILSDEEV--TTEEIDYVVERI---GAFGGDNRAGIPRTLHRISAIRNR 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64985.17286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L2P2_9PHAE4.100e-2494.23AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FII7_ECTSI3.230e-1397.06AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6R4_ECTSI1.650e-950.98AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JW61_9PHAE1.750e-950.98AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3M1EVH3_9CHLR3.910e-556.25AAA family ATPase n=1 Tax=Chloroflexi bacterium Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64985contigEcto-sp13_S_contig64985:346..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score70.5
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog2880.D7FII7
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.ATPases associated with a variety of cellular activities
EggNOG OGs2QQ4X@2759,COG3854@1
Cds size156
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.2768288-CDS-Ecto-sp13_S_contig64985:345..5011681463896.2768288-CDS-Ecto-sp13_S_contig64985:345..501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64985 346..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64985.17286.1prot_Ecto-sp13_S_contig64985.17286.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64985 346..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64985.17286.1

>prot_Ecto-sp13_S_contig64985.17286.1 ID=prot_Ecto-sp13_S_contig64985.17286.1|Name=mRNA_Ecto-sp13_S_contig64985.17286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
KLFLCSDEGVVVTKEHIDMVVGRLDLEGKFAGDNRAGVPGQLHRISVMRS
RE
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mRNA from alignment at Ecto-sp13_S_contig64985:346..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64985.17286.1 ID=mRNA_Ecto-sp13_S_contig64985.17286.1|Name=mRNA_Ecto-sp13_S_contig64985.17286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64985:346..501+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCTGTTCCTCTGCAGCGACGAGGGCGTGGTCGTAACTAAAGAACACAT
CGATATGGTCGTTGGGCGGCTCGACCTCGAGGGCAAGTTCGCGGGCGACA
ACCGAGCGGGCGTCCCGGGGCAGTTGCACCGCATCAGCGTCATGAGGAGC
AGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64985:346..501+

>mRNA_Ecto-sp13_S_contig64985.17286.1 ID=mRNA_Ecto-sp13_S_contig64985.17286.1|Name=mRNA_Ecto-sp13_S_contig64985.17286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64985:346..501+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCTGTTCCTCTGCAGCGACGAGGGCGTGGTCGTAACTAAAGAACACAT
CGATATGGTCGTTGGGCGGCTCGACCTCGAGGGCAAGTTCGCGGGCGACA
ACCGAGCGGGCGTCCCGGGGCAGTTGCACCGCATCAGCGTCATGAGGAGC
AGGGAG
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