mRNA_Ecto-sp13_S_contig6498.17285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6498.17285.1
Unique NamemRNA_Ecto-sp13_S_contig6498.17285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6498.17285.1 vs. uniprot
Match: D8LGG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG0_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 6.650e-137
Identity = 240/298 (80.54%), Postives = 241/298 (80.87%), Query Frame = 1 
Query:    1 KIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQMPQGEYRGAQLEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFQYDPEKVKSAGNRGLAKEVXXXXXXXXXXXXXXXXXXXXXAMRTQRASGGMVATPEERHAQIDKNRALKKQLQTTHYEIGTDDDYM 894
            KIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQ+PQGE RG QLEKNRQLKV L                               AGNRGLAKEV                     AMRTQRASGGMVAT EER AQIDKNRALKKQLQTTHYEIGTDDDYM
Sbjct:    6 KIKWAIMNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTXXXXXXXXXXXXXXXXXXXXRTMATDQMDLQVPQGEDRGVQLEKNRQLKVKL-------------------------------AGNRGLAKEVKADLSRTHFTLGNHKFDWQTDAMRTQRASGGMVATAEERQAQIDKNRALKKQLQTTHYEIGTDDDYM 272
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BLAST of mRNA_Ecto-sp13_S_contig6498.17285.1 vs. uniprot
Match: A0A835YW84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW84_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.670e-36
Identity = 105/301 (34.88%), Postives = 140/301 (46.51%), Query Frame = 1 
Query:  136 MIRELEQRKLRNTQASVAFGSAKILYESDAMSR-------------------QKDILGAPPRGEDEKRNKELKQALTRTHFTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTXXXXXXXXXXXXXXXXXXXX---RTMATDQMDLQMP----------QGEYRGAQ---------------LEKNRQLKVALTRTHFKFGEEEMDYTTDHQMGFQYDPEKVKSAGNRGLAKEVXXXXXXXXXXXXXXXXXXXXXAMRTQR-ASGGMVATPEERHAQIDKNRALKKQLQTTHYEIGTDDDYM 894
            M  EL +RKL NT+ S+A GSA  +YE+DA  +                   QKDIL +   G D + N+ LK  LTRT F+ G+E + Y+R S LPDPTG L ++TGVLN                          +    + L++P             + G Q               L+ NR LKVALTRT+  FG+E  +Y +D++ GF+YD ++VKSAG   L+KEV                     A R  R A     + PEE   Q + NR LK+ LQ T+Y IGTD DYM
Sbjct:    1 MASELHRRKLNNTRTSIALGSAPTVYETDAQGQLPAPMYATLHCGRYESQAHQKDILSSHSAGADREHNRLLKAQLTRTTFSLGDERVDYQRVSALPDPTGRLHEFTGVLNAEVKEMMKRSNMYFGEPGGNFAKGHVLRNPALLLRLPLPGNAAPSYDTAAHEGMQAVGASGVAAADMQATLQHNRDLKVALTRTNLNFGDEVPEYVSDYKRGFKYDADEVKSAGRACLSKEVKDDLRRSHFKFGTDPVVWETDARRNMRQAEQAEHSGPEEVARQREHNRLLKQSLQRTNYAIGTDADYM 301
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BLAST of mRNA_Ecto-sp13_S_contig6498.17285.1 vs. uniprot
Match: A0A7S2FEP3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEP3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.400e-14
Identity = 50/98 (51.02%), Postives = 58/98 (59.18%), Query Frame = 1 
Query:   37 MPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLRNTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTHFTFG 330
            MPS    KRF TT  +  E VA RR EV +R  M   L  RKL NTQ S+ FGS  ++YESDAM RQKDILG    G D K  KELK  L +++   G
Sbjct:    1 MPS----KRFTTTLNSSLEAVAKRRDEVENRQQMSASLRGRKLANTQTSIVFGSDSVVYESDAMRRQKDILGNKSAGADAKACKELKLGLQKSNIAIG 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6498.17285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LGG0_ECTSI6.650e-13780.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YW84_9STRA1.670e-3634.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FEP3_9STRA2.400e-1451.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6498contigEcto-sp13_S_contig6498:2536..6914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size897
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_003910.1
Cds size879
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6498.17285.1prot_Ecto-sp13_S_contig6498.17285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6498 2554..6914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.1448529-UTR-Ecto-sp13_S_contig6498:2535..25531681463896.1448529-UTR-Ecto-sp13_S_contig6498:2535..2553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6498 2536..2553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.1572385-CDS-Ecto-sp13_S_contig6498:2553..26521681463896.1572385-CDS-Ecto-sp13_S_contig6498:2553..2652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6498 2554..2652 +
1681463896.1711829-CDS-Ecto-sp13_S_contig6498:3255..33421681463896.1711829-CDS-Ecto-sp13_S_contig6498:3255..3342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6498 3256..3342 +
1681463896.1819203-CDS-Ecto-sp13_S_contig6498:4154..43671681463896.1819203-CDS-Ecto-sp13_S_contig6498:4154..4367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6498 4155..4367 +
1681463896.190299-CDS-Ecto-sp13_S_contig6498:4891..50351681463896.190299-CDS-Ecto-sp13_S_contig6498:4891..5035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6498 4892..5035 +
1681463896.2219148-CDS-Ecto-sp13_S_contig6498:5248..53411681463896.2219148-CDS-Ecto-sp13_S_contig6498:5248..5341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6498 5249..5341 +
1681463896.2341828-CDS-Ecto-sp13_S_contig6498:5875..59921681463896.2341828-CDS-Ecto-sp13_S_contig6498:5875..5992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6498 5876..5992 +
1681463896.2451622-CDS-Ecto-sp13_S_contig6498:6788..69141681463896.2451622-CDS-Ecto-sp13_S_contig6498:6788..6914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6498 6789..6914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6498.17285.1

>prot_Ecto-sp13_S_contig6498.17285.1 ID=prot_Ecto-sp13_S_contig6498.17285.1|Name=mRNA_Ecto-sp13_S_contig6498.17285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MNAGEEMPSPRATKRFETTSLAGTEYVASRRGEVPDRGTMIRELEQRKLR
NTQASVAFGSAKILYESDAMSRQKDILGAPPRGEDEKRNKELKQALTRTH
FTFGEEPMVYERTSTLPDPTGHLDDYTGVLNTEVKNMIKSTNLSFGNAPT
VYRTMATDQMDLQMPQGEYRGAQLEKNRQLKVALTRTHFKFGEEEMDYTT
DHQMGFQYDPEKVKSAGNRGLAKEVKADLSRTHFTLGNHKFDWQTDAMRT
QRASGGMVATPEERHAQIDKNRALKKQLQTTHYEIGTDDDYM*
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mRNA from alignment at Ecto-sp13_S_contig6498:2536..6914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6498.17285.1 ID=mRNA_Ecto-sp13_S_contig6498.17285.1|Name=mRNA_Ecto-sp13_S_contig6498.17285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6498:2536..6914+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATAAAATGGGCAATCATGAACGCGGGCGAGGAAATGCCTTCGCCACG
GGCAACAAAACGATTCGAGACCACATCGCTCGCCGGAACGGAGTACGTCG
CGTCCCGCCGAGGGGAGGTACGATCTAATTTATGACTGAATATCATAATA
AGGAGAGAAATAATCATGTTAACGATATCGCGTCCCAACCTTTGCATACC
ATGACCTACGGGTAGGTGCTCGGCGTTTCCATTTCATAGACTAGTCTATC
AGCATCTTCGGTTGGAGGGCAACGCCCTTATACTGTAGTACGGAACAATT
GCGGCCAAACGATACTCTTGTGTTGTACAGAAATCTACTCGGTATGCTTC
CTTCTGTCAGCTTCCTCGTTCATGGGATGCTACTGTAAATCATCGTTCAG
TCCATCACGCTCTTCTGTCAAAAGGAGTTCCATGACACACGGTACTTACA
GGTACCAATATCGCAAAGGACCTGCGGGACTGAGGAATTCCACACATTAA
CCTGGACCTTAGGGTCCCCAATCGCTTGTTTCACTGCACTTTACGAAGTG
GACATGGAACTTTTTTTCACACGCAATTGATGCTCAGCCACGGAACCTTA
CATGTAGTTAGCATACGGACGTTGTAGCCTTTGCCTCCAACTTCAAGACA
AGCTCGGCGTTCCGAGCAACTCTTTTGTCGCAGATACCGTAGTAAGATCA
CCTTGAAACTTGATCTCCAGGTACCAGACCGAGGTACCATGATAAGGGAG
TTGGAGCAGCGAAAACTTCGCAACACCCAGGCTTCTGTGGCTTTTGGATC
GGCAAAGGTAGGCAAATGTATGACATCATTAGAGTCATGGTTGCGTGGTT
GTGGAACTTTAAGGAAGTGATCTTTGAATCATAAGTATCGCCTTTTCATT
TGACTGTGAAGAGATATGCGTACAACACGTCATCAGACACACATGACCAA
CAGAACAAAGCCAGCCATTGCATTGCCCTCATGTACGAGTTTTTTTTGCA
CGAGTGCCTTGCAACAAGCTGTGGGGCAATCAACAGTTGGCCACACACTG
GATCGTACGCAGACGAGGCCTCCTGTCGGCCGGCAAGTTTGGGTTCAATC
AGAAGACTGTAATCGAATGAAGGCAAGGCTTCGAAAGTACTGGGTCGCCA
ACGTAATGGTACCAAGCGATGGTTGGCATGTCGCCCTCGCTGATCTCTAC
ATTATGGATCAATCTCCGCGAGGCAAATGCTTGAAACAGATGAGAAGTCA
CAGATCTTAAAGCTCGCACGATGCAGGTTCTAGGCGTACCGTTGGGATTG
CCGAGACGACGATGATGCCACCGAAACCTTCACATATACCTACACAATAG
AGAATCATGCCAAGTTCGTTTTCATCATAAGCGGTTGTAGCAATCCCGTT
CGCATTCATGCGACTCACCAATGCCTCGTGCACGGTACGTGTCTAGACTC
CAAACATTGGAAGCGTTGCAGTTTGCAGGGTTGCAAGGAGATACGGTGTT
GATTCTTCGCTTCGGTCATGCGAATGGATGGTGATCCCCCTCCCCTCGTC
CATCGACAATTTTCCAACCGTTTAAACACGTCACCAAAATCTTGCCTGCC
CCCGACACGCACATAAAAGATATTGTACGAAAGCGATGCCATGAGCCGAC
AAAAAGACATTCTGGGGGCGCCGCCGAGAGGCGAAGACGAGAAGCGCAAC
AAGGAGCTGAAGCAAGCGTTAACCAGAACGCACTTCACTTTTGGGGAAGA
GCCGATGGTGTACGAGCGAACAAGTACGCTGCCGGATCCTACGGGTCACC
TAGATGACTACACGGGGGTTCTCAACACTGAGGTGTGTTTTTGTGCTGCT
ACCGTAAGAAGAGTTGGTCTCGTATGTTTCGGTCATCAACTTCTTGTCGT
GTCGTTCAAGTTTGGTTCTCAAACAGATGTTTGTATCCGCTTGTTCAGAA
GTATGGAGTTTTGAACGGGTGGCAACGGCAAACGTCCATGTTTTACAAAT
TATTGCGGTTTTTTCCAGCTGTGCAGAATTTAACAATCATCCAAGTAAAA
CACAGGGGTGGCTTCGGGGGGCGCAGGGTTGGAGGGTTTTCCCAACGGCA
GCCCTACGCAGGTTGATCTTTCGCAAGAAGAAAAAATCAAATCTGAGGGC
TGGGTTCGAAGAACGCAAGCTTCTGTATATACAGTCTCCCTTGTCGATGC
CTGAGTGCGGCGAGGCACAGTTTGATGTGACCTGAGCGGGCAATCATTTC
AAGCAGAGGACCTTGTTGGCCACTCAAAGTAAGTATGTACAGTGTTCAAA
TGCCCTTTTTGCTCTACTTCTACCCTCACTCAACCAACATCCTTCACTCC
TTACAGGTGAAGAACATGATCAAGAGCACAAACCTATCGTTTGGCAATGC
CCCGACGGTGTACAGGACGATGGCCACCGACCAGATGGACCTGCAAATGC
CCCAGGGGGAATACAGGGGGGCCCAGCTCGAAAAAAACCGCCAGCTAAAG
GTAAACGAGTAGCCGTTTATAGGAGGAATCGTTCGGATGTTTCACAAGGT
CAGCCGGTCGTAGTCCTGACTGCGGGTACGCGAGATTGCTTTCTACTGTG
TTCATTCTCTCGAGGGCAGTGTACGAAAGAAACCCACAAAGGTGCGAACG
CTTCTTCACGCAGATATTGCCGATTTTTCAGGGTGGCTTCTCCGCTTCAA
CTCAAACACCCAGGTGGCCCTCACTCGAACACATTTCAAGTTTGGTGAGG
AAGAGATGGACTACACCACGGATCACCAGATGGGGTTCCAGTACGACCCA
GAAAAGGTATTTGTACCTCATGTACAGAGATTCCAGCTGCGCTCATGTTG
CAGGCGTGTTCCTGCCGTTGCCAAAGAGCAGATGACTCGGCGAATGAAGA
GGACAAGGATTTCGTAGTTCGTAGTTGTAACAAGAGCGCTCATTCGTCAC
TACAATGAAGTTGGACGCGTCCTTGTGTACTTTGATGTATCAACAACCAT
CAAATTATCATGTATTGCGGCAGATCTCAACGGAAAAGACGAAGAGGGTC
AGCCGCAGACTCGTCATAAAGGGTGTTTTGGTAAAGCTGCTTCACACGCC
AACCGATTGACTAGTCTGGGCTCGGTGTGGCGTTGTTTCGGCCTTTGCGC
AAGGTTGCACTCGCCCTCACCTACCTGCATCCCCACTTTCTCCACCCACT
GCTGTACACGTTTATTTGGTCCATGTTTGGTTGCCGTACGGTGATAACTC
GAGAAACAGTATGTCATTCGTTGCCTTTGATCATGTTCTACGACGGAGCG
CACACTCAGAGGAGATCAACCAATGCGTTGTACTTGCCAGGTAAAATCAG
CGGGAAACAGGGGACTTGCCAAGGAGGTCAAGGCCGACCTATCGCGGACT
CATTTCACCCTGGGGAACCACAAATTTGACTGGCAAACGGACGCAATGAG
GACACAAGTGAGTTTGTTCATTTGTGTCATTCTCTTCTGTGGCCACCATT
GCTCACCTTTCTTACTGATGAACTTCGACTTTGGAAAGCGATGGCATCAG
TCTGGAGCCACCTACCCTACAGAAGCTCTTTACCAGGTGCTCAATTCTCA
AGTATGCCCTCAGGTGTAACGGCTGCGCTGATCTTGCGCCTTATCTTCAT
GCCCGAGCACGTGCTCACGTTGCGTTGAGGATCTTCTCTGAGTTTGTTTT
TCCCTGCTCTCACTCAATGCAAACCACGTGTCGATCCTCCTTCGACGGTT
GTTAAGCTTGTCGTAGACTCCATTCTTTAGGGATCACGCGTACTCTGGAT
TGAGCTGGAAAGGTTTCCGAGTAATAAACACGGTTTGTTTCTGCGCTAAT
GGTTCACTTCAAGCGGTTCCTGCGGATGTTAGTGTTGGCCAGCCTGTTCA
AATGCGGGGATCTACTTGTTCTTTTGACTTGGGGAGCTCTTCGGGTGTAC
CCGCGACTTTGCCCAACGTCGTGTCGTGGTGAAGGCTCAGTACCTGTCAG
ACAAGGAAAGGTGTTAACATGTCCCCAAAGCCTCGAGGCAGGGCATTGAT
ATAAATGGCGTGCCATCTGTGAACGATTGATGGAGCGTGTTTTTTCCGCT
ACAGCGCTATTTGTCGCTGGAATGCAAGGATCTAGGTGGGGTTAGTGAAG
GCGTGTCGCTCCGAGCTAACCTTCTTTCTCGTCCTACTGTCCCACCCACG
GTTCCCGACTCTGCCGCCGCGGGATTCCCCTCCGCATGGATCATGCCATT
AAGCGAGCTTCCGGCGGCATGGTAGCAACACCGGAGGAGCGACACGCGCA
GATTGATAAGAATAGAGCGCTCAAGAAGCAGCTTCAGACGACTCACTACG
AGATCGGCACAGATGATGACTACATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6498:2536..6914+

>mRNA_Ecto-sp13_S_contig6498.17285.1 ID=mRNA_Ecto-sp13_S_contig6498.17285.1|Name=mRNA_Ecto-sp13_S_contig6498.17285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6498:2536..6914+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGCGGGCGAGGAAATGCCTTCGCCACGGGCAACAAAACGATTCGA
GACCACATCGCTCGCCGGAACGGAGTACGTCGCGTCCCGCCGAGGGGAGG
TACCAGACCGAGGTACCATGATAAGGGAGTTGGAGCAGCGAAAACTTCGC
AACACCCAGGCTTCTGTGGCTTTTGGATCGGCAAAGATATTGTACGAAAG
CGATGCCATGAGCCGACAAAAAGACATTCTGGGGGCGCCGCCGAGAGGCG
AAGACGAGAAGCGCAACAAGGAGCTGAAGCAAGCGTTAACCAGAACGCAC
TTCACTTTTGGGGAAGAGCCGATGGTGTACGAGCGAACAAGTACGCTGCC
GGATCCTACGGGTCACCTAGATGACTACACGGGGGTTCTCAACACTGAGG
TGAAGAACATGATCAAGAGCACAAACCTATCGTTTGGCAATGCCCCGACG
GTGTACAGGACGATGGCCACCGACCAGATGGACCTGCAAATGCCCCAGGG
GGAATACAGGGGGGCCCAGCTCGAAAAAAACCGCCAGCTAAAGGTGGCCC
TCACTCGAACACATTTCAAGTTTGGTGAGGAAGAGATGGACTACACCACG
GATCACCAGATGGGGTTCCAGTACGACCCAGAAAAGGTAAAATCAGCGGG
AAACAGGGGACTTGCCAAGGAGGTCAAGGCCGACCTATCGCGGACTCATT
TCACCCTGGGGAACCACAAATTTGACTGGCAAACGGACGCAATGAGGACA
CAACGAGCTTCCGGCGGCATGGTAGCAACACCGGAGGAGCGACACGCGCA
GATTGATAAGAATAGAGCGCTCAAGAAGCAGCTTCAGACGACTCACTACG
AGATCGGCACAGATGATGACTACATGTAG
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