mRNA_Ecto-sp13_S_contig6497.17283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6497.17283.1
Unique NamemRNA_Ecto-sp13_S_contig6497.17283.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6497.17283.1 vs. uniprot
Match: A0A6H5KYY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY8_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.190e-36
Identity = 73/85 (85.88%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:   28 LAEDERNKSTPWRPPGSPGSANVVATAXXXXXXXXXXMARSVRPTMNPHRNRISRTKGGPTREDSVDRRVPPRDDDFSHVGGGWG 282
             AEDERNKSTPWRPPGSP SANVVATAXXXXXXXXXX  RS RPTMNPHRNRISR+KGGP R+ SVDRR PPRDD+FSH GGGWG
Sbjct:   34 FAEDERNKSTPWRPPGSPSSANVVATAXXXXXXXXXXXXRSARPTMNPHRNRISRSKGGPIRQGSVDRRGPPRDDEFSHAGGGWG 118
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BLAST of mRNA_Ecto-sp13_S_contig6497.17283.1 vs. uniprot
Match: D8LHB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB1_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.340e-33
Identity = 75/94 (79.79%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 PVLEGGSARLAEDERNKSTPWRPPGSPGSANVVATAXXXXXXXXXXMARSVRPTMNPHRNRISRTKGGPTREDSVDRRVPPRDDDFSHVGGGWG 282
            PVLEGGSARLAEDERNKSTPWRPPGSP         XXXXXXXXXX     RPTMNPHRNRISR KGGPTR+ SVDRR PPRDDDFSH GGGWG
Sbjct: 1297 PVLEGGSARLAEDERNKSTPWRPPGSPXXXXXXXXXXXXXXXXXXXXXXXARPTMNPHRNRISRNKGGPTRQGSVDRRGPPRDDDFSHAGGGWG 1390
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6497.17283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYY8_9PHAE1.190e-3685.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB1_ECTSI1.340e-3379.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6497contigEcto-sp13_S_contig6497:2205..3145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463896.0597775-CDS-Ecto-sp13_S_contig6497:2204..22411681463896.0597775-CDS-Ecto-sp13_S_contig6497:2204..2241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6497 2205..2241 +
1681463896.071288-CDS-Ecto-sp13_S_contig6497:2900..31451681463896.071288-CDS-Ecto-sp13_S_contig6497:2900..3145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6497 2901..3145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6497.17283.1prot_Ecto-sp13_S_contig6497.17283.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6497 2205..3145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6497.17283.1

>prot_Ecto-sp13_S_contig6497.17283.1 ID=prot_Ecto-sp13_S_contig6497.17283.1|Name=mRNA_Ecto-sp13_S_contig6497.17283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
PVLEGGSARLAEDERNKSTPWRPPGSPGSANVVATAVAATAAAAGAMARS
VRPTMNPHRNRISRTKGGPTREDSVDRRVPPRDDDFSHVGGGWG
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mRNA from alignment at Ecto-sp13_S_contig6497:2205..3145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6497.17283.1 ID=mRNA_Ecto-sp13_S_contig6497.17283.1|Name=mRNA_Ecto-sp13_S_contig6497.17283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6497:2205..3145+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTGCTCGAGGGCGGCAGCGCGCGACTAGCGGAAGGTGAGACGTATCA
ACGAGGGGGAAGGGAGAAAATAGCTCTCAGAACATGGACTGAGTAAAAAA
GCAGAGTTGGCCGTTTCACCTTTCCAGAGAACGTTCTTCGCAAGGGTGCA
CGTTCCACGAGCGGTGAACTCCTAGGATTGTTTTTCCCTTCTACAAAGAC
CGGGATGGTTTTAGGTCAACAAACTGAGAGAAACGTGAGATACGAACTGT
TTCCGAACGAACTGTAAACGAGATTATCGGAGCATTTTCGGAACAGTTCC
ACCGCGGTAAGCTAGTTCGACTTCTAAGTAGGGTGTGAAGCAAGACTCTA
TTGTGAAACCCACCGTGAACAGCGCGGGAGGTTTAGACTATGAAGGATCG
GCAAGAACGAACAAGGGTGTGATCGAAAACAGCGAAGTATGGTTCGTCAA
ACATCGAGCAGAAAGTGACACAGTAATTCCTGCCAGCTCCCACCTGAAGA
GGCAGGCCGTGTCGGTCGGTTCAAGTACACCGGGCAACTGCTCAGCGTAG
AACCAACGCGCCGATTTACTGGATCTAGAAACCGCAAGAAAATATGCCAG
GCGTGTCCTTGGGACTACGGCAATAACACCACGAACTTTTCTCCACCTCC
TAGTCCTCCTCGCCATAAGCCAACCACGCCCTCCTTCTTGCCGAAGATGA
GCGCAACAAGTCTACCCCTTGGCGACCGCCGGGCAGCCCCGGCTCGGCCA
ACGTGGTAGCCACCGCGGTAGCGGCGACGGCGGCGGCGGCCGGGGCGATG
GCAAGGTCGGTGAGGCCGACAATGAACCCTCACCGGAACAGAATCAGCCG
TACCAAGGGCGGTCCGACAAGGGAAGACTCGGTGGACAGGAGGGTTCCCC
CCCGTGACGACGATTTTTCCCACGTGGGAGGAGGTTGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6497:2205..3145+

>mRNA_Ecto-sp13_S_contig6497.17283.1 ID=mRNA_Ecto-sp13_S_contig6497.17283.1|Name=mRNA_Ecto-sp13_S_contig6497.17283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6497:2205..3145+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTGCTCGAGGGCGGCAGCGCGCGACTAGCGGAAGATGAGCGCAACAA
GTCTACCCCTTGGCGACCGCCGGGCAGCCCCGGCTCGGCCAACGTGGTAG
CCACCGCGGTAGCGGCGACGGCGGCGGCGGCCGGGGCGATGGCAAGGTCG
GTGAGGCCGACAATGAACCCTCACCGGAACAGAATCAGCCGTACCAAGGG
CGGTCCGACAAGGGAAGACTCGGTGGACAGGAGGGTTCCCCCCCGTGACG
ACGATTTTTCCCACGTGGGAGGAGGTTGGGGG
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