mRNA_Ecto-sp13_S_contig6494.17281.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6494.17281.1
Unique NamemRNA_Ecto-sp13_S_contig6494.17281.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6494.17281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6494contigEcto-sp13_S_contig6494:4391..5107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size670
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.7985928-UTR-Ecto-sp13_S_contig6494:4390..46641681463895.7985928-UTR-Ecto-sp13_S_contig6494:4390..4664Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6494 4391..4664 +
1681463895.8424811-UTR-Ecto-sp13_S_contig6494:5074..51071681463895.8424811-UTR-Ecto-sp13_S_contig6494:5074..5107Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6494 5075..5107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.818964-CDS-Ecto-sp13_S_contig6494:4664..47191681463895.818964-CDS-Ecto-sp13_S_contig6494:4664..4719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 4665..4719 +
1681463895.8314455-CDS-Ecto-sp13_S_contig6494:4766..50741681463895.8314455-CDS-Ecto-sp13_S_contig6494:4766..5074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6494 4767..5074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6494.17281.1prot_Ecto-sp13_S_contig6494.17281.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6494 4665..5074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6494.17281.1

>prot_Ecto-sp13_S_contig6494.17281.1 ID=prot_Ecto-sp13_S_contig6494.17281.1|Name=mRNA_Ecto-sp13_S_contig6494.17281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
MKVAVVLSCCGAVCTNGVGRERRPEEDLNINKKQPCCVFISYWMQDRSLS
QGEYTIRLCTDQSGDEVPTREEGRQRIRTTHNAHCRVTLNNHGGLPSSTR
QGRPLIPVQNAKKVSSHVLV*
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mRNA from alignment at Ecto-sp13_S_contig6494:4391..5107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6494.17281.1 ID=mRNA_Ecto-sp13_S_contig6494.17281.1|Name=mRNA_Ecto-sp13_S_contig6494.17281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6494:4391..5107+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATGCTCTTGTGTTCCAGGTGTCTCGACTGCGCAGTCGGGCAACAAAGCG
AAATTTGGCGTCAAGTCGAAGACGACCATCCGGGACACTAAAAAGGCCAC
CAACAAATTGGAAACTGTTTGTTTTGTGCTGTACGTACAACGCAATACGG
CCTTCCGCTGGACAGTGTCAGAACAGTCCTTCCCCATTTTCACTACGATC
AAGAGAAATATCCGTTGGCGACACGGCTTGCTTCAGCCAAGCATACTTAT
GAACAATCCTCTACGAGATACTCGATGAAGGTCGCGGTGGTGTTGTCGTG
TTGCGGGGCGGTGTGTACCAACGGTGTTGTCGTGAGACGACAAGCCAATA
CTGACACGATCGCCTCTCAATCTGATGTCGAGAGCGAAGACCAGAGGAAG
ATTTGAATATCAACAAGAAGCAACCGTGCTGCGTGTTCATTTCTTATTGG
ATGCAAGATCGTTCGCTGTCACAGGGTGAATATACCATCCGGTTGTGCAC
GGATCAGAGCGGTGATGAAGTTCCAACAAGAGAAGAGGGTCGTCAACGCA
TACGTACGACACACAACGCACACTGCCGTGTCACGCTGAACAACCACGGT
GGCCTGCCGTCTAGCACACGACAGGGACGACCGCTCATCCCAGTTCAAAA
TGCCAAGAAGGTGTCCTCTCATGTGCTGGTATAGCACACACCGAGAGACG
TTGAGAAACGAAAAATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6494:4391..5107+

>mRNA_Ecto-sp13_S_contig6494.17281.1 ID=mRNA_Ecto-sp13_S_contig6494.17281.1|Name=mRNA_Ecto-sp13_S_contig6494.17281.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6494:4391..5107+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCGCGGTGGTGTTGTCGTGTTGCGGGGCGGTGTGTACCAACGG
TGTTGGTCGAGAGCGAAGACCAGAGGAAGATTTGAATATCAACAAGAAGC
AACCGTGCTGCGTGTTCATTTCTTATTGGATGCAAGATCGTTCGCTGTCA
CAGGGTGAATATACCATCCGGTTGTGCACGGATCAGAGCGGTGATGAAGT
TCCAACAAGAGAAGAGGGTCGTCAACGCATACGTACGACACACAACGCAC
ACTGCCGTGTCACGCTGAACAACCACGGTGGCCTGCCGTCTAGCACACGA
CAGGGACGACCGCTCATCCCAGTTCAAAATGCCAAGAAGGTGTCCTCTCA
TGTGCTGGTATAG
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