mRNA_Ecto-sp13_S_contig6489.17274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6489.17274.1
Unique NamemRNA_Ecto-sp13_S_contig6489.17274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6489.17274.1 vs. uniprot
Match: A0A6H5KQB0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB0_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 4.380e-61
Identity = 97/101 (96.04%), Postives = 99/101 (98.02%), Query Frame = 1 
Query:  157 QVQTGLQTLELPSKADHVEGLFTVFDKNRDGVIHFAEFEELALHRRHAAHLPRTDGKHAFSILLADVFENLDHTADGFIRKEDIRRALDKLDIVASDAQIT 459
            QVQTGLQTLELPSKADHVEGLFTVFDKNRDGVIHFAEFEELALHRRHAAH PRTDG+HAFS LLADVFENLDHTADGFIR+EDIRRALDKLDIVASDAQIT
Sbjct:   20 QVQTGLQTLELPSKADHVEGLFTVFDKNRDGVIHFAEFEELALHRRHAAHFPRTDGEHAFSTLLADVFENLDHTADGFIREEDIRRALDKLDIVASDAQIT 120
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BLAST of mRNA_Ecto-sp13_S_contig6489.17274.1 vs. uniprot
Match: D8LH95_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH95_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 5.370e-59
Identity = 117/153 (76.47%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:    1 MVLKRTLSIAKAPDLDEEEXXXELERFKASPEVVREVFSHLDRHEVGYVNREQVQTGLQTLELPSKADHVEGLFTVFDKNRDGVIHFAEFEELALHRRHAAHLPRTDGKHAFSILLADVFENLDHTADGFIRKEDIRRALDKLDIVASDAQIT 459
            MVLKRTLSIAKAPDLDEE XXXELERFK                         VQTGLQTLELPSKADHVEGLFTVFDKNRDG+IHFAEFEELALHRRHAAH  RTDG+      LADVFENLDHTADGFIRKEDIRRALDKLDIVASDAQIT
Sbjct:    1 MVLKRTLSIAKAPDLDEEXXXXELERFK-------------------------VQTGLQTLELPSKADHVEGLFTVFDKNRDGIIHFAEFEELALHRRHAAHFLRTDGE--LLAQLADVFENLDHTADGFIRKEDIRRALDKLDIVASDAQIT 126
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BLAST of mRNA_Ecto-sp13_S_contig6489.17274.1 vs. uniprot
Match: A0A8H7UKW8_MORIS (Uncharacterized protein (Fragment) n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UKW8_MORIS)

HSP 1 Score: 54.7 bits (130), Expect = 8.860e-6
Identity = 37/123 (30.08%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:  100 VREVFSHLDRHEVGYVNREQVQTGLQTL--ELPSKA--DHVEGLFTVFDKNRDGVIHFAEFEELALHRRHAAHLPRTDGKHAFSILLADVFENLDHTADGFIRKEDIRRALDKLDIVASDAQI 456
            ++ +FS L   E GY++ E V  G+QTL  +LP++   D V+ L    D ++DG++ FAEFE   + +                  L  +FE +D + D  +++E+++ AL +  I ASD ++
Sbjct:   68 LKSLFSALANPETGYIDTESVLKGIQTLTYQLPAQKRDDIVKKLVEKCDTSKDGLVDFAEFETYVVEKEEE---------------LWHLFEQIDKSGDQMLQREEVKSALRRGGIAASDKEV 175
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BLAST of mRNA_Ecto-sp13_S_contig6489.17274.1 vs. uniprot
Match: A0A835Z3Z5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.430e-6
Identity = 49/165 (29.70%), Postives = 72/165 (43.64%), Query Frame = 1 
Query:   16 TLSIAKAPDLDEEEXXXELERFKASPEVVREVFSHLDRHEVGYVNREQVQTGLQTLELPSKADHVEGLF------------------TVFDKNRDGVIHFAEFEELALHRRHAAHLPRTDGKHAFSILLADVFENLDHTADGFIRKEDIRRALDKLDIVASDAQI 456
            TL + +    D +    ELE FK     VR VF  LD+   G V RE+++  L+ +ELP+  +H+                      T+  +   G   +A++   AL R  A               L   F +LD   DG I ++DIRRAL +LD+ ASD +I
Sbjct:  256 TLRLDQGDAGDSKANEAELESFKVR---VRSVFQDLDQDGDGLVRREEMRAALKLMELPASPEHIXXXXXXXXXXXXXXXXXXXXXATIPSELAPGAYAYAQY---ALSRHQA---------------LTRAFRSLDSNGDGLITQDDIRRALRRLDVHASDGEI 399
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6489.17274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KQB0_9PHAE4.380e-6196.04EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LH95_ECTSI5.370e-5976.47N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A8H7UKW8_MORIS8.860e-630.08Uncharacterized protein (Fragment) n=1 Tax=Mortier... [more]
A0A835Z3Z5_9STRA9.430e-629.70Mitochondrial carrier domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6489contigEcto-sp13_S_contig6489:213..3221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score201.8
Seed ortholog evalue2.3e-49
Seed eggNOG ortholog2880.D8LH95
Model size462
KEGG koko:K14684
KEGG TC2.A.29.23
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.ATP transmembrane transporter activity
EggNOG OGsKOG0036@1,KOG0036@2759
Cds size462
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.386378-CDS-Ecto-sp13_S_contig6489:212..3291681463895.386378-CDS-Ecto-sp13_S_contig6489:212..329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6489 213..329 -
1681463895.3994524-CDS-Ecto-sp13_S_contig6489:1246..14321681463895.3994524-CDS-Ecto-sp13_S_contig6489:1246..1432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6489 1247..1432 -
1681463895.4098465-CDS-Ecto-sp13_S_contig6489:1819..18851681463895.4098465-CDS-Ecto-sp13_S_contig6489:1819..1885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6489 1820..1885 -
1681463895.420644-CDS-Ecto-sp13_S_contig6489:3128..32211681463895.420644-CDS-Ecto-sp13_S_contig6489:3128..3221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6489 3129..3221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6489.17274.1prot_Ecto-sp13_S_contig6489.17274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6489 213..3221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6489.17274.1

>prot_Ecto-sp13_S_contig6489.17274.1 ID=prot_Ecto-sp13_S_contig6489.17274.1|Name=mRNA_Ecto-sp13_S_contig6489.17274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MVLKRTLSIAKAPDLDEEEEEEELERFKASPEVVREVFSHLDRHEVGYVN
REQVQTGLQTLELPSKADHVEGLFTVFDKNRDGVIHFAEFEELALHRRHA
AHLPRTDGKHAFSILLADVFENLDHTADGFIRKEDIRRALDKLDIVASDA
QIT*
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mRNA from alignment at Ecto-sp13_S_contig6489:213..3221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6489.17274.1 ID=mRNA_Ecto-sp13_S_contig6489.17274.1|Name=mRNA_Ecto-sp13_S_contig6489.17274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3009bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6489:213..3221- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCTGAAGCGGACCCTGAGCATTGCGAAGGCCCCCGACCTGGACGA
GGAGGAAGAGGAGGAGGAGCTGGAAAGGTTCAAGGCGAGTCCCGTCCATC
GTTTTCTTTTTTGTTGTTGTCGGCGTCGTAGTTTGGTGGTGCTTACATAG
TTTGGTGGGGGTTGTTGTAGTTGTTGCTGGTGCGGCTGCTGCACGTTCTG
CTACCATCGCCGTGGTTATCGTCATCGCCGTGGTTATTTGGCACGCGGTG
GCACGAAAGCTGACAGTATTTTCCTTTTCATGTAGTGTGCATCGGTCGAT
TGATGTCGCCCTCGTAGTTGTTGATGACCGTGTCGTCGTATGGCCTGCGT
GGTCGAGAAGCACTAGCTAGATGCCCTCGAGAGAGGAGAAAGAGGCGCCT
TCGTGCAGACCTCACGATCGGATGCGTGGTGACTCCGTGTGGAACTTGCT
CCGCCTGGACGTATGTTTCTTTTCGTCTAGAGTGCCTGGAAACACGGTTA
CAGTAGGGGGCTGAACAACCACGCCGACTCAACAACGCCGGTCGTCCTGT
ATGGCGCCGGTGATTTTGCTGGGCACAGACTGCATGAAATCACCAAGTAA
TTATGTGGTTTGAATAGCACGGATTCCTCTGAATAGCACCGGTCGATTCG
CCGGGCACGTACCGGCGTTGGTGAGGGTCCGCCACTGAAGTTCGATCGAA
CCTTCCGGAGACGAATGAGACCCATGTTGCTGACGGAGCGAAATGGTGAC
CCTGGTGCGACGTCCAGAATCTACGTCCCTCTCTGCTTGTTCAGACACCA
GGGAGGGAGGTTGGGAGGCCTTGCGGAAAGGGTCGCATTTTTTCTGGCCT
TGTTTTTGTATTGGCGTAGTCGCCGTGATCGAAGCCACCTCCAGCGGAAA
AGATGGTTTACCGAAGGTACAATAGCGTACGCGATGTAAAAAAATATTGA
GAACGAAAAAGAGTGAGGGTGACGCCGCAACTGGTTTGTTTGCCGGTTGG
TATTGGGGTGTCCTGTCCTTGAGAGAGACACACACAGAGAGAGAGAAGGA
ATTAGACCGCGGTCGGACCGTTTTTTTTGTTTCTTCGATAGTGGGTGAGC
ACGGCAACAGTCCTGCGGAGTTGCAAACGAGCGGCTCCTTCCCGCCTCCC
CCCTCCCCCCTCCCCCCTCTCTCTGTATCTCGCGTCCCCTCTTCCTGTCT
TCCTTTATCTCTGTCTCCCTCTTTCTCTATAACTCTCTCTCTCTCTCTCT
CGAACCCCGCTCAAAACGCCAACTATCTCTTCCGTCCCGCGCATTGTGTC
TATTTTTCGTGTACGTCGACGCGATGCAATACACAGGAGGTTGTACGAGA
GGTTTTTTCGCACCTGGACCGACATGAGGTTGGCTACGTCAACCGAGAAC
AGGTGAGAAAAGGAAACAAAAAAATGTGCAGCCTCAAACAGTAGGTTGTG
GGTGACTCTTGAGAGTCGTAGATCCATGACGGTGTTTGTCCCACGTGCTT
TTTTAAGTACCGCTCATGATAATCAGTCGCAGTTTGCTCTCATGCTTTGG
CGCTTTTTGGAACCAGCGTTTGATCTGTCCTGATCTGACGACCACACGGT
TTGATTTTCAAACGATCGGGCATTCTGTACGATATGATTTTTTTCGATTA
TCTGACTATCGTGCCACACGATTTGGTTTTTTCCCTTGATTTCATTCATA
TCATGCAACAACATCTGGTTCTCACGATCCAGTCGATTCGCACACACTAG
AAGTCCAACACGCCACCCCCGTGCCCCTGCCATCACCAGGTCCAGACGGG
GCTGCAGACACTGGAGCTCCCTTCGAAGGCGGATCACGTGGAGGGTCTCT
TCACGGTGTTCGACAAGAACAGGGACGGCGTTATTCACTTCGCGGAGTTC
GAAGAGCTCGCTCTTCACCGAAGGCACGCAGCACACTTGCCACGAACTGA
CGGCAAACACGCCTTCTCAATCCTAGTTTTTTGCTGTGCGTGTCCCATGA
AATTGTTTTGTATGTGTCCCATGTAGTTGTTTTGTTGTGTGTTCCATGGT
TGTTTCATTAGAAGTTGTGCGTCTCCCGTGGTCGTTTCGTCAGCATCGAC
GGCACGAAACCCGTTGGAGCCGTGGAGAGACGCCAGCCTTCCGCGGGACA
CTTCCGGGAAAGTTGCCTCCAGGACGTTGTGTGCTTGTCCGCGTTTCTTT
TTGTTCGCGTCAGCTGCACTTTGCGGCTGACGAACAAGACGCCGCTCAGT
CTCAGTGCGGACAACTGCGAAACCCGTTTTATTTTGGTCCACGCCCCGCC
CCCCCTAGGGGGGCAGCAGAGGAGACTAGACCGAAGGTCCCAGCCTCTGG
ACGCAAGCCCTTGTAGCAAAGTCAATGGGAGAAAAAAATCAAAAAAACTC
TTATGACGTCACGTCGTGCGTACCCCGGGCGACAACAATCGATCGAGTGT
GTACACATAGTGGTGTTGGTGTTGGCATTCTGGGAAGAAGTCAACCCAGT
CAGGCTGCGTACCGCGTGCCGCAACCACCGCCACCGGTGGATTGAGTTAT
AGGTACACGTCGGTGTTTTGGTTCCGTCACCCTCTCGCCCACCTTTGGTA
TTTTCCCGCGTGCGTGTTGGTCCCCTCGCTTTTTCCACAGAGCACAGCTG
GCTGACATCTTCTACGAAGTAGCTCTCGCCACGATGGTTTTTTCTTTTCT
TATTTTTGTTTTTTTTTGTTCTCCTCGCTTGGACGTGATCGCTCCTTTGC
TCGCTCAGCCTTCAGTTGGCTGCTATGTTCTACGAGCTCTTGTTGTGTTC
GACTTACTTTCGTTGTTTCTCATTGTTTTTTTTGTTACCGTTTTTTTCGC
CTCGCTTGGACGTGATCGCTCTCTCGCTCCGTCAGAGCTCAGCTGGCTGA
TGTCTTCGAGAACCTGGATCACACCGCGGACGGCTTTATCCGCAAGGAGG
ACATCCGGAGAGCCCTCGACAAGCTCGATATCGTAGCCTCGGACGCGCAG
ATCACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6489:213..3221-

>mRNA_Ecto-sp13_S_contig6489.17274.1 ID=mRNA_Ecto-sp13_S_contig6489.17274.1|Name=mRNA_Ecto-sp13_S_contig6489.17274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6489:213..3221- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCTGAAGCGGACCCTGAGCATTGCGAAGGCCCCCGACCTGGACGA
GGAGGAAGAGGAGGAGGAGCTGGAAAGGTTCAAGGCGAGTCCCGAGGTTG
TACGAGAGGTTTTTTCGCACCTGGACCGACATGAGGTTGGCTACGTCAAC
CGAGAACAGGTCCAGACGGGGCTGCAGACACTGGAGCTCCCTTCGAAGGC
GGATCACGTGGAGGGTCTCTTCACGGTGTTCGACAAGAACAGGGACGGCG
TTATTCACTTCGCGGAGTTCGAAGAGCTCGCTCTTCACCGAAGGCACGCA
GCACACTTGCCACGAACTGACGGCAAACACGCCTTCTCAATCCTACTGGC
TGATGTCTTCGAGAACCTGGATCACACCGCGGACGGCTTTATCCGCAAGG
AGGACATCCGGAGAGCCCTCGACAAGCTCGATATCGTAGCCTCGGACGCG
CAGATCACGTAG
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