mRNA_Ecto-sp13_S_contig6487.17273.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6487.17273.1
Unique NamemRNA_Ecto-sp13_S_contig6487.17273.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 5.000e-69
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 1
Query:   19 QLGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDLEG 351
            +LGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKP+YVSSGDEGMLKEWNA+TLALNREIDLEG
Sbjct: 1496 ELGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPVYVSSGDEGMLKEWNATTLALNREIDLEG 1606          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A6H5KFK9_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK9_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 1.240e-41
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1
Query:  121 RKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAK-----PLYVSSGDEGMLKEWNASTLALNREIDLEG 351
            RKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAK     PLYVSSGDEGM+KEWNA+TLALNREIDLEG
Sbjct:  646 RKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKVWFCVPLYVSSGDEGMVKEWNATTLALNREIDLEG 727          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A2R5G5S9_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.840e-16
Identity = 37/95 (38.95%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   64 LSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDLE 348
            +S G   +RSVC +   +  +I+V     EI EISA++GTD+N+G  +++GH++ +LWGLA HP KP Y + GD+ M++ W+ +T  + + + L+
Sbjct: 1304 VSQGLHSIRSVCWSPEEN--RIVVANRACEIVEISAADGTDLNNGVPVIQGHYKHELWGLAMHPTKPEYCTVGDDQMVRVWDVATHKMLKSVKLD 1396          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A7S1CBA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBA4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.020e-15
Identity = 38/104 (36.54%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   34 NEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
            N FD+          P +RSVC +  +   ++L+GT  SEI+EISAS+GT ++    L++GHF+ +LWGLA HP +  Y+++GD+  L+ W+ +   + +  D+
Sbjct:  374 NVFDIA---TFGSVRPSIRSVCWDPSTS--RLLIGTIGSEIWEISASDGTSIHADGPLVQGHFKHELWGLAMHPTERKYITAGDDQTLRVWDIAQRRMTQMTDV 472          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A812T9P4_9DINO (EML6 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T9P4_9DINO)

HSP 1 Score: 79.7 bits (195), Expect = 5.350e-15
Identity = 41/105 (39.05%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   13 SLQLGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLAL 327
            SL+L  + EFD+          P VRSV     ++  K+LVGT+ +E++E++A EGT+++DG CL++GH +D++WG+A HP K    + GD+  L+ W+  T +L
Sbjct:  666 SLELATLAEFDIA---KFGSFRPAVRSVQWVPSAE--KLLVGTAGAEVYELNAMEGTNLHDG-CLLQGHCKDEVWGIAVHPQKGEVATVGDDRTLRIWSLKTHSL 764          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A5D6XKB7_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKB7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.260e-13
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   40 FDLVGRPYLSGGTPCVRSVCLNDHS-DGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
            FDL     L+ G   +R++C  D S   +K+LVGT  S+I E+  S G  +N G  L  GHF  +LWGLA HP++  + ++GD+G L+ W+  T  + R + L
Sbjct: 2040 FDLAA---LNAGC-LLRAICSVDLSASAQKLLVGTKSSDIVEVDVSSGVVLNGGRPLFSGHFTHELWGLAVHPSRREFTTTGDDGTLRVWDMDTKHMTRLLRL 2138          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: K3WHU2_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHU2_GLOUD)

HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  112 SDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNR 333
            + G+K+L+GT  S+I E+  S GT +N G  L  GH+  +LWGLA HP++  +V++GD+G L+ W+  T  L +
Sbjct: 1997 TSGQKLLIGTRSSDIIEMDVSSGTLLNGGKPLFSGHYNSELWGLAVHPSRREFVTTGDDGTLRVWDMETKQLTQ 2070          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A8K1FCK6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCK6_PYTOL)

HSP 1 Score: 75.1 bits (183), Expect = 2.350e-13
Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   67 SGGTPCV-RSVC-LNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLAL 327
            S GT C+ +++C L+  S+GRKILVGT+ S+IFE+  +  T +N G  ++ GHF  +LWGLA HP    + ++GD+  L+ W+  T  L
Sbjct: 1968 SMGTGCLNKALCSLSLDSNGRKILVGTASSDIFELEVASETVLNGGKPVVSGHFALELWGLAVHPNAREFTTTGDDATLRTWDMDTKQL 2056          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A3P8XEW9_ESOLU (EMAP like 6 n=4 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XEW9_ESOLU)

HSP 1 Score: 69.3 bits (168), Expect = 2.460e-11
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   82 CVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
            CVRSVC        KILVGT   EI E+           + L+ GH + ++WGLA+HP+K L++S+ D+G ++ WN +   L  ++ L
Sbjct: 1611 CVRSVCRGKG----KILVGTQDGEIIEVGEKNAAS----NILINGHMQGEIWGLAAHPSKDLFISASDDGTIRIWNLADKKLLNKVSL 1690          
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A6Q2ZLR1_ESOLU (EMAP like 6 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2ZLR1_ESOLU)

HSP 1 Score: 69.3 bits (168), Expect = 2.460e-11
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   82 CVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
            CVRSVC        KILVGT   EI E+           + L+ GH + ++WGLA+HP+K L++S+ D+G ++ WN +   L  ++ L
Sbjct: 1632 CVRSVCRGKG----KILVGTQDGEIIEVGEKNAAS----NILINGHMQGEIWGLAAHPSKDLFISASDDGTIRIWNLADKKLLNKVSL 1711          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y1_ECTSI5.000e-6997.30N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KFK9_9PHAE1.240e-4191.46HELP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2R5G5S9_9STRA1.840e-1638.95Echinoderm microtubule-associated protein-like 1 n... [more]
A0A7S1CBA4_9STRA2.020e-1536.54Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812T9P4_9DINO5.350e-1539.05EML6 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A5D6XKB7_9STRA1.260e-1338.83EF-hand domain-containing protein n=1 Tax=Pythium ... [more]
K3WHU2_GLOUD1.710e-1341.89EF-hand domain-containing protein n=1 Tax=Globispo... [more]
A0A8K1FCK6_PYTOL2.350e-1342.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3P8XEW9_ESOLU2.460e-1137.50EMAP like 6 n=4 Tax=Esox lucius TaxID=8010 RepID=A... [more]
A0A6Q2ZLR1_ESOLU2.460e-1137.50EMAP like 6 n=1 Tax=Esox lucius TaxID=8010 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6487contigEcto-sp13_S_contig6487:19..1033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score228.0
Seed ortholog evalue2.1e-57
Seed eggNOG ortholog2880.D7G0Y1
Model size351
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size324
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.3135662-CDS-Ecto-sp13_S_contig6487:18..1081681463895.3135662-CDS-Ecto-sp13_S_contig6487:18..108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6487 19..108 -
1681463895.3284056-CDS-Ecto-sp13_S_contig6487:363..4711681463895.3284056-CDS-Ecto-sp13_S_contig6487:363..471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6487 364..471 -
1681463895.3429227-CDS-Ecto-sp13_S_contig6487:880..10061681463895.3429227-CDS-Ecto-sp13_S_contig6487:880..1006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6487 881..1006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.3523636-UTR-Ecto-sp13_S_contig6487:1006..10331681463895.3523636-UTR-Ecto-sp13_S_contig6487:1006..1033Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6487 1007..1033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6487.17273.1prot_Ecto-sp13_S_contig6487.17273.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6487 19..1006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6487.17273.1

>prot_Ecto-sp13_S_contig6487.17273.1 ID=prot_Ecto-sp13_S_contig6487.17273.1|Name=mRNA_Ecto-sp13_S_contig6487.17273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASE
GTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLAL
NREIDLEG
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mRNA from alignment at Ecto-sp13_S_contig6487:19..1033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6487.17273.1 ID=mRNA_Ecto-sp13_S_contig6487.17273.1|Name=mRNA_Ecto-sp13_S_contig6487.17273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6487:19..1033- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATGAAAAACATCCCTGCAGCTTGGTATGGTGAACGAGTTTGATCTCGT GGGGAGGCCGTATCTATCGGGCGGGACCCCCTGCGTCCGGTCAGTGTGCT TGAACGACCACTCGGACGGCAGGAAGATCCTCGTCGGAACATCTTGCAGT GAGGTATGAATGCATACTGCATGGCATGGTGTTCTCATGATTCGTCGGAT CCCAAGTTTTCGGTTCTCTTGAGAATACAATGTATCAGACCATCGAATCG AAAATCTGGAAGTCAACCTTTCGTCAATGACTCGGGTGGGAGTCATGATC AGAATGGAGACGAGCCCTTGGGGGCGAGGGGGGCAAGCTCCTGGCGATGA CAGTCAGCAGATGAGATTTTAACAGATGTTTCTTCTAGTGGACACGAACA CCTTCCAAGAAGTCAGGACAAGGACCATCCGCTCTGACCAGACCGACCAC CGCCTGGAACACGCACGCTTGCCTCTCACAAATATGTGGAGGAGATGCAA TAGCGATTTTCGAGTGCATTCGAATTGTGCATGGACGCGATCATCGTACC TGCTCCACTCAGATTTTCGAGATTTCCGCGAGCGAGGGGACGGATGTCAA CGACGGAGACTGCCTGATGCGGGGCCATTTCCGAGACCAGCTATGGGGTC TTGCGTCGCACCCAGCAAAGGTGTGGTTTTGCGTAGTACGTGTATTGCTA TAGAACATGGTAGCGATTGGACAGCATTACCCTTTCGATATCGGAAGTAC AACTCGTGTCAAGGCTAGTTCTTGTCTCTGGTCTACGTCAGAAGGTGGTA TATCCACATATTGTACCTGCTCGCCTTGGATGCCACACAACGCTGATGAT GACAGTTTGTTTTGAACGAGAGGCAGCACCTCGACTCCTAATCCGTGTAT CATCCTACGAACCCGACTGACACAGCCGCTCTACGTTAGCTCGGGCGATG AAGGCATGCTGAAAGAGTGGAACGCGAGTACCCTGGCTCTCAACAGGGAG ATCGATCTCGAAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6487:19..1033-

>mRNA_Ecto-sp13_S_contig6487.17273.1 ID=mRNA_Ecto-sp13_S_contig6487.17273.1|Name=mRNA_Ecto-sp13_S_contig6487.17273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6487:19..1033- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAACGAGTTTGATCTCGTGGGGAGGCCGTATCTATCGGGCGGGAC
CCCCTGCGTCCGGTCAGTGTGCTTGAACGACCACTCGGACGGCAGGAAGA
TCCTCGTCGGAACATCTTGCAGTGAGATTTTCGAGATTTCCGCGAGCGAG
GGGACGGATGTCAACGACGGAGACTGCCTGATGCGGGGCCATTTCCGAGA
CCAGCTATGGGGTCTTGCGTCGCACCCAGCAAAGCCGCTCTACGTTAGCT
CGGGCGATGAAGGCATGCTGAAAGAGTGGAACGCGAGTACCCTGGCTCTC
AACAGGGAGATCGATCTCGAAGGT
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