mRNA_Ecto-sp13_S_contig6487.17273.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI) HSP 1 Score: 234 bits (596), Expect = 5.000e-69 Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 1
Query: 19 QLGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDLEG 351
+LGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKP+YVSSGDEGMLKEWNA+TLALNREIDLEG
Sbjct: 1496 ELGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPVYVSSGDEGMLKEWNATTLALNREIDLEG 1606
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A6H5KFK9_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK9_9PHAE) HSP 1 Score: 155 bits (392), Expect = 1.240e-41 Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 1
Query: 121 RKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAK-----PLYVSSGDEGMLKEWNASTLALNREIDLEG 351
RKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAK PLYVSSGDEGM+KEWNA+TLALNREIDLEG
Sbjct: 646 RKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKVWFCVPLYVSSGDEGMVKEWNATTLALNREIDLEG 727
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A2R5G5S9_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S9_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.840e-16 Identity = 37/95 (38.95%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 64 LSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDLE 348
+S G +RSVC + + +I+V EI EISA++GTD+N+G +++GH++ +LWGLA HP KP Y + GD+ M++ W+ +T + + + L+
Sbjct: 1304 VSQGLHSIRSVCWSPEEN--RIVVANRACEIVEISAADGTDLNNGVPVIQGHYKHELWGLAMHPTKPEYCTVGDDQMVRVWDVATHKMLKSVKLD 1396
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A7S1CBA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBA4_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 2.020e-15 Identity = 38/104 (36.54%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 34 NEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
N FD+ P +RSVC + + ++L+GT SEI+EISAS+GT ++ L++GHF+ +LWGLA HP + Y+++GD+ L+ W+ + + + D+
Sbjct: 374 NVFDIA---TFGSVRPSIRSVCWDPSTS--RLLIGTIGSEIWEISASDGTSIHADGPLVQGHFKHELWGLAMHPTERKYITAGDDQTLRVWDIAQRRMTQMTDV 472
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A812T9P4_9DINO (EML6 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T9P4_9DINO) HSP 1 Score: 79.7 bits (195), Expect = 5.350e-15 Identity = 41/105 (39.05%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 13 SLQLGMVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLAL 327
SL+L + EFD+ P VRSV ++ K+LVGT+ +E++E++A EGT+++DG CL++GH +D++WG+A HP K + GD+ L+ W+ T +L
Sbjct: 666 SLELATLAEFDIA---KFGSFRPAVRSVQWVPSAE--KLLVGTAGAEVYELNAMEGTNLHDG-CLLQGHCKDEVWGIAVHPQKGEVATVGDDRTLRIWSLKTHSL 764
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A5D6XKB7_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKB7_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.260e-13 Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query: 40 FDLVGRPYLSGGTPCVRSVCLNDHS-DGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
FDL L+ G +R++C D S +K+LVGT S+I E+ S G +N G L GHF +LWGLA HP++ + ++GD+G L+ W+ T + R + L
Sbjct: 2040 FDLAA---LNAGC-LLRAICSVDLSASAQKLLVGTKSSDIVEVDVSSGVVLNGGRPLFSGHFTHELWGLAVHPSRREFTTTGDDGTLRVWDMDTKHMTRLLRL 2138
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: K3WHU2_GLOUD (EF-hand domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHU2_GLOUD) HSP 1 Score: 75.5 bits (184), Expect = 1.710e-13 Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 112 SDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNR 333
+ G+K+L+GT S+I E+ S GT +N G L GH+ +LWGLA HP++ +V++GD+G L+ W+ T L +
Sbjct: 1997 TSGQKLLIGTRSSDIIEMDVSSGTLLNGGKPLFSGHYNSELWGLAVHPSRREFVTTGDDGTLRVWDMETKQLTQ 2070
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A8K1FCK6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCK6_PYTOL) HSP 1 Score: 75.1 bits (183), Expect = 2.350e-13 Identity = 38/89 (42.70%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 67 SGGTPCV-RSVC-LNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLAL 327
S GT C+ +++C L+ S+GRKILVGT+ S+IFE+ + T +N G ++ GHF +LWGLA HP + ++GD+ L+ W+ T L
Sbjct: 1968 SMGTGCLNKALCSLSLDSNGRKILVGTASSDIFELEVASETVLNGGKPVVSGHFALELWGLAVHPNAREFTTTGDDATLRTWDMDTKQL 2056
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A3P8XEW9_ESOLU (EMAP like 6 n=4 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XEW9_ESOLU) HSP 1 Score: 69.3 bits (168), Expect = 2.460e-11 Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 82 CVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
CVRSVC KILVGT EI E+ + L+ GH + ++WGLA+HP+K L++S+ D+G ++ WN + L ++ L
Sbjct: 1611 CVRSVCRGKG----KILVGTQDGEIIEVGEKNAAS----NILINGHMQGEIWGLAAHPSKDLFISASDDGTIRIWNLADKKLLNKVSL 1690
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Match: A0A6Q2ZLR1_ESOLU (EMAP like 6 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A6Q2ZLR1_ESOLU) HSP 1 Score: 69.3 bits (168), Expect = 2.460e-11 Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 1
Query: 82 CVRSVCLNDHSDGRKILVGTSCSEIFEISASEGTDVNDGDCLMRGHFRDQLWGLASHPAKPLYVSSGDEGMLKEWNASTLALNREIDL 345
CVRSVC KILVGT EI E+ + L+ GH + ++WGLA+HP+K L++S+ D+G ++ WN + L ++ L
Sbjct: 1632 CVRSVCRGKG----KILVGTQDGEIIEVGEKNAAS----NILINGHMQGEIWGLAAHPSKDLFISASDDGTIRIWNLADKKLLNKVSL 1711 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6487.17273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6487.17273.1 >prot_Ecto-sp13_S_contig6487.17273.1 ID=prot_Ecto-sp13_S_contig6487.17273.1|Name=mRNA_Ecto-sp13_S_contig6487.17273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp MVNEFDLVGRPYLSGGTPCVRSVCLNDHSDGRKILVGTSCSEIFEISASEback to top mRNA from alignment at Ecto-sp13_S_contig6487:19..1033- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6487.17273.1 ID=mRNA_Ecto-sp13_S_contig6487.17273.1|Name=mRNA_Ecto-sp13_S_contig6487.17273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1015bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6487:19..1033- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6487:19..1033- >mRNA_Ecto-sp13_S_contig6487.17273.1 ID=mRNA_Ecto-sp13_S_contig6487.17273.1|Name=mRNA_Ecto-sp13_S_contig6487.17273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6487:19..1033- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |