mRNA_Ecto-sp13_S_contig64859.17271.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64859.17271.1
Unique NamemRNA_Ecto-sp13_S_contig64859.17271.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: D7FPG4_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPG4_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 7.450e-44
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    1 LDAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            LDAAPRLEVYQG GEA+FVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFL SELSAVR ALDHLRETM
Sbjct:  225 LDAAPRLEVYQGPGEAIFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLHSELSAVRAALDHLRETM 303          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A836C8X0_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.860e-18
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 LDAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            L +A R+E+ QG GEA+FVPS WHHQV+N GDG    GG T S+N NW N   L +V AFL +EL+A R A+ H R  M
Sbjct:  109 LKSAARVELVQGPGEALFVPSFWHHQVMNLGDGA---GGPTASINHNWLNAHALPRVWAFLAAELAATRAAIAHERAAM 184          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A7S3UTJ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTJ8_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 9.540e-18
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   10 APRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            A  L + QGAG+A+FVPSGW+HQV N          LT+S+N NWFNG N+D++ +FL +ELSAVR ++DHL++ M
Sbjct:   30 ARALVLEQGAGDALFVPSGWYHQVENM--------ELTLSINHNWFNGSNIDRIWSFLDAELSAVRRSIDHLKDEM 97          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A0S7HRD7_9TELE (JMJD4 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HRD7_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 1.460e-15
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 DAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            +A   LE+ Q AGE +FVPSGWHHQV N  D        T+S+N NW NG N+D +  FL++ELS+V+  ++  R TM
Sbjct:   23 EACQPLEIIQEAGEIIFVPSGWHHQVYNLED--------TISINHNWLNGCNIDIMWQFLQNELSSVQKEIEEWRNTM 92          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A8C5EUC9_9TELE (Jumonji domain containing 4 n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5EUC9_9TELE)

HSP 1 Score: 79.0 bits (193), Expect = 2.010e-15
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    4 DAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            +A   LE+ Q AGE +FVPSGWHHQV N  D        T+S+N NW NG N+D + AFL+SEL +V+  +D  R+TM
Sbjct:  241 EACQPLEIIQEAGEIVFVPSGWHHQVYNLED--------TISINHNWLNGCNVDVMWAFLQSELQSVQKEIDEWRDTM 310          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A8C0Y8T7_CYPCA (Jumonji domain containing 4 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C0Y8T7_CYPCA)

HSP 1 Score: 76.3 bits (186), Expect = 3.310e-15
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 DAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            +A   LE+ Q AGE +FVPSGWHHQV N  D        T+S+N NW NG NLD +  FL+ ELS+V+  ++  R+TM
Sbjct:   80 EACQPLEIIQEAGEIIFVPSGWHHQVYNLED--------TISINHNWLNGCNLDIMWQFLQEELSSVQREIEEWRDTM 149          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: UPI001885C6A6 (2-oxoglutarate and iron-dependent oxygenase JMJD4 n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885C6A6)

HSP 1 Score: 77.8 bits (190), Expect = 5.210e-15
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 LDAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            L+A   LE+ Q AGE +FVPSGWHHQV N  D        T+S+N NW NG N+D +  FL++ELS+V+  +D  R TM
Sbjct:  242 LEACQPLEIIQEAGEIIFVPSGWHHQVYNLED--------TISINHNWLNGCNVDIMWQFLQNELSSVQKEIDEWRNTM 312          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A3P9HGT4_ORYLA (Jumonji domain containing 4 n=10 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P9HGT4_ORYLA)

HSP 1 Score: 77.8 bits (190), Expect = 5.230e-15
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    4 DAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            +A   LE+ Q AGE MFVPSGWHHQV N  D        T+S+N NW NG N+D +  FL+ ELS+V+  +D  R TM
Sbjct:  243 EACQPLEIIQEAGEIMFVPSGWHHQVYNLED--------TISINHNWLNGCNIDIMWQFLQKELSSVQKEIDEWRNTM 312          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A672GR78_SALFA (JmjC domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672GR78_SALFA)

HSP 1 Score: 77.8 bits (190), Expect = 5.740e-15
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 DAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            +A   LE+ Q AGE +FVPSGWHHQV N  D        T+S+N NW NG NLD +  FL+SEL +V+  +D  R+TM
Sbjct:  343 EACQPLEIIQEAGEIIFVPSGWHHQVYNLED--------TISINHNWLNGCNLDLMWTFLQSELLSVQKEIDEWRDTM 412          
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Match: A0A7J5Z8J8_DISMA (JmjC domain-containing protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5Z8J8_DISMA)

HSP 1 Score: 77.4 bits (189), Expect = 5.770e-15
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    4 DAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFNGFNLDKVAAFLRSELSAVRGALDHLRETM 237
            +A   LE+ Q AGE +FVPSGWHHQV N  D        T+S+N NW NG N+D +  FL+SELS+V+  +D  R TM
Sbjct:  243 EACQPLEIIQEAGEIIFVPSGWHHQVYNLED--------TISINHNWLNGCNVDIMWQFLQSELSSVQKEIDEWRNTM 312          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64859.17271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPG4_ECTSI7.450e-4494.94JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836C8X0_9STRA7.860e-1854.43JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3UTJ8_HETAK9.540e-1852.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0S7HRD7_9TELE1.460e-1547.44JMJD4 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A8C5EUC9_9TELE2.010e-1550.00Jumonji domain containing 4 n=1 Tax=Gouania willde... [more]
A0A8C0Y8T7_CYPCA3.310e-1548.72Jumonji domain containing 4 n=1 Tax=Cyprinus carpi... [more]
UPI001885C6A65.210e-1549.372-oxoglutarate and iron-dependent oxygenase JMJD4 ... [more]
A0A3P9HGT4_ORYLA5.230e-1550.00Jumonji domain containing 4 n=10 Tax=Percomorphace... [more]
A0A672GR78_SALFA5.740e-1550.00JmjC domain-containing protein n=1 Tax=Salarias fa... [more]
A0A7J5Z8J8_DISMA5.770e-1550.00JmjC domain-containing protein n=1 Tax=Dissostichu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64859contigEcto-sp13_S_contig64859:26..763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score156.4
Seed ortholog evalue5.6e-36
Seed eggNOG ortholog2880.D7FPG4
Model size237
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Cupin-like domain
EggNOG OGsKOG2131@1,KOG2131@2759
Cds size237
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463895.2139726-CDS-Ecto-sp13_S_contig64859:25..1841681463895.2139726-CDS-Ecto-sp13_S_contig64859:25..184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64859 26..184 -
1681463895.226594-CDS-Ecto-sp13_S_contig64859:685..7631681463895.226594-CDS-Ecto-sp13_S_contig64859:685..763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64859 686..763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64859.17271.1prot_Ecto-sp13_S_contig64859.17271.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64859 26..763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64859.17271.1

>prot_Ecto-sp13_S_contig64859.17271.1 ID=prot_Ecto-sp13_S_contig64859.17271.1|Name=mRNA_Ecto-sp13_S_contig64859.17271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
LDAAPRLEVYQGAGEAMFVPSGWHHQVVNTGDGREGGGGLTVSVNTNWFN
GFNLDKVAAFLRSELSAVRGALDHLRETM
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mRNA from alignment at Ecto-sp13_S_contig64859:26..763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64859.17271.1 ID=mRNA_Ecto-sp13_S_contig64859.17271.1|Name=mRNA_Ecto-sp13_S_contig64859.17271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64859:26..763- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGACGCCGCCCCGAGGCTAGAGGTTTACCAGGGGGCCGGGGAAGCTAT GTTCGTGCCCTCGGGATGGCACCACCAGGTGCGCGTCGACTCTTTTCCGA ACGGTGTTTCAGTATGGACGCTCTAGTAAATATGTATCACGGGTTGTTTG GTGCTACATACGGGGTATGTGTATGGGCAACATGATTTTCCCGGAAAACG GTATCTTCGTCGCAGGTAGGTGCGTATGATTGGCGTCGTGAGATACCAGG TATACTTCTACGTTCACGCTATACCTACGTTCCAGATTATTGGGGCAGAT TATCGGGGCAGAAATTCAGACAAAGAGCGACCCAGGAGTCCTGCGTGCAA ATATCAGCGGGTGGACGGGTAGACGGTAGGCGGGTGGGTGGGTGGGAACG CGTCCTCGTTTCTTGTTTGCCCTCGTACTCCGACAAAAAGATACCCTGTT GTTTGTAACATACTCTTGTCAGGACGGAAACTACAAATCTATCGACCAAT CGATGTGATCCATCTTAACCCAACACCATATTCTAACACTTTCCCCAACC CGCCCCCGCGCCTAACAATAAACAATCAGGTTGTCAACACCGGAGACGGG AGGGAAGGAGGCGGGGGCTTGACCGTCTCGGTCAATACGAACTGGTTCAA CGGCTTCAACCTCGACAAGGTTGCGGCCTTCTTGCGCTCGGAGCTGTCCG CGGTGCGCGGCGCGCTCGACCACCTCCGAGAGACCATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64859:26..763-

>mRNA_Ecto-sp13_S_contig64859.17271.1 ID=mRNA_Ecto-sp13_S_contig64859.17271.1|Name=mRNA_Ecto-sp13_S_contig64859.17271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64859:26..763- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGACGCCGCCCCGAGGCTAGAGGTTTACCAGGGGGCCGGGGAAGCTAT
GTTCGTGCCCTCGGGATGGCACCACCAGGTTGTCAACACCGGAGACGGGA
GGGAAGGAGGCGGGGGCTTGACCGTCTCGGTCAATACGAACTGGTTCAAC
GGCTTCAACCTCGACAAGGTTGCGGCCTTCTTGCGCTCGGAGCTGTCCGC
GGTGCGCGGCGCGCTCGACCACCTCCGAGAGACCATG
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