mRNA_Ecto-sp13_S_contig64729.17257.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64729.17257.1
Unique NamemRNA_Ecto-sp13_S_contig64729.17257.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.550e-34
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAAS+DSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ
Sbjct:  610 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASKDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 679
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BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A6A0GX66_HYAAZ (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GX66_HYAAZ)

HSP 1 Score: 111 bits (277), Expect = 1.200e-28
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+ ARVGAGD QQ+GVSTFMAEMLE S+I+  A+RDSLII+DELGRGTST+DGFGLAW+ISEHI + I+
Sbjct:   35 DAILARVGAGDCQQKGVSTFMAEMLETSSILKTATRDSLIIVDELGRGTSTYDGFGLAWAISEHIAREIK 104
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BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A7S0SP60_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SP60_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 9.300e-28
Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+FARVGAGD Q RG+STFMAEMLE +AI+ AA+  SLIIIDELGRGTST+DGFGLAW+ISEHIV  ++
Sbjct:   90 DAIFARVGAGDCQLRGISTFMAEMLETAAILKAATPSSLIIIDELGRGTSTYDGFGLAWAISEHIVNQVR 159
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BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A835YUY7_9STRA (Muts protein-like protein 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.070e-27
Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+FARVGAGDAQQRGVSTFMAEMLEASAI+ AA+  SLIIIDELGRGTSTFDGFGLAW+ISE++V+ ++
Sbjct:  551 DALFARVGAGDAQQRGVSTFMAEMLEASAILDAATDKSLIIIDELGRGTSTFDGFGLAWAISEYLVQEVK 620
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BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A8B7NFF1_HYAAZ (DNA mismatch repair protein Msh2-like n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NFF1_HYAAZ)

HSP 1 Score: 111 bits (277), Expect = 6.960e-27
Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+ ARVGAGD QQ+GVSTFMAEMLE S+I+  A+RDSLII+DELGRGTST+DGFGLAW+ISEHI + I+
Sbjct:  699 DAILARVGAGDCQQKGVSTFMAEMLETSSILKTATRDSLIIVDELGRGTSTYDGFGLAWAISEHIAREIK 768
[Close]
BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A7S0RPG5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RPG5_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 6.970e-27
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+FARVGAGD Q RGVSTFMAEMLE ++I+  A+  SL+IIDELGRGTST+DGFGLAW+ISEHI   ++
Sbjct:   31 DAIFARVGAGDCQLRGVSTFMAEMLETASILKGATAASLVIIDELGRGTSTYDGFGLAWAISEHIATELK 100
[Close]
BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A4RQJ8_OSTLU (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RQJ8_OSTLU)

HSP 1 Score: 110 bits (276), Expect = 9.500e-27
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+FARVGAGD Q RG+STFMAEMLE +AI+ AA+  SL+IIDELGRGTST+DGFGLAW+ISEHIV  IQ
Sbjct:  702 DAIFARVGAGDCQLRGISTFMAEMLETAAILKAATSSSLVIIDELGRGTSTYDGFGLAWAISEHIVNEIQ 771
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BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A7S3QKU8_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QKU8_DUNTE)

HSP 1 Score: 110 bits (276), Expect = 9.500e-27
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+FARVGAGD QQRGVSTFMAEMLE  AI+   +++SL+IIDELGRGTST+DGFGLAW+ISEH+++T Q
Sbjct:  721 DAIFARVGAGDCQQRGVSTFMAEMLETGAILKGTTKNSLVIIDELGRGTSTYDGFGLAWAISEHLMETTQ 790
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BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A090M9L0_OSTTA (DNA mismatch repair protein, MSH2 n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M9L0_OSTTA)

HSP 1 Score: 110 bits (275), Expect = 1.300e-26
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTIQ 212
            DA+FARVGAGD Q RG+STFMAEMLE +AI+ AA+  SL+IIDELGRGTST+DGFGLAW+ISEHIV  IQ
Sbjct:  692 DAIFARVGAGDCQLRGISTFMAEMLETAAILKAATPSSLVIIDELGRGTSTYDGFGLAWAISEHIVNEIQ 761
[Close]
BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Match: A0A699YKY5_HAELA (DNA mismatch repair protein MSH2 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YKY5_HAELA)

HSP 1 Score: 108 bits (271), Expect = 1.600e-26
Identity = 52/69 (75.36%), Postives = 63/69 (91.30%), Query Frame = 3 
Query:    3 DAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRGTSTFDGFGLAWSISEHIVKTI 209
            DA+FARVGAGD QQRGVSTFMAEMLE +AI+ +AS  SL+IIDELGRGTST+DGFGLAW+ISEH+++ +
Sbjct:  181 DAIFARVGAGDCQQRGVSTFMAEMLETAAILKSASPASLVIIDELGRGTSTYDGFGLAWAISEHLLEVV 249
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64729.17257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7H3_9PHAE2.550e-3498.57DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A6A0GX66_HYAAZ1.200e-2875.71DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S0SP60_9CHLO9.300e-2875.71Hypothetical protein (Fragment) n=2 Tax=Mantoniell... [more]
A0A835YUY7_9STRA1.070e-2781.43Muts protein-like protein 2A n=1 Tax=Tribonema min... [more]
A0A8B7NFF1_HYAAZ6.960e-2775.71DNA mismatch repair protein Msh2-like n=1 Tax=Hyal... [more]
A0A7S0RPG5_9CHLO6.970e-2771.43Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A4RQJ8_OSTLU9.500e-2777.14DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S3QKU8_DUNTE9.500e-2774.29Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A090M9L0_OSTTA1.300e-2677.14DNA mismatch repair protein, MSH2 n=2 Tax=Ostreoco... [more]
A0A699YKY5_HAELA1.600e-2675.36DNA mismatch repair protein MSH2 (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64729contigEcto-sp13_S_contig64729:48..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size214
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.6916564-CDS-Ecto-sp13_S_contig64729:47..1161681463893.6916564-CDS-Ecto-sp13_S_contig64729:47..116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64729 48..116 -
1681463893.704791-CDS-Ecto-sp13_S_contig64729:612..7531681463893.704791-CDS-Ecto-sp13_S_contig64729:612..753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64729 613..753 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.7156482-UTR-Ecto-sp13_S_contig64729:753..7561681463893.7156482-UTR-Ecto-sp13_S_contig64729:753..756Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig64729 754..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64729.17257.1prot_Ecto-sp13_S_contig64729.17257.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64729 48..753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64729.17257.1

>prot_Ecto-sp13_S_contig64729.17257.1 ID=prot_Ecto-sp13_S_contig64729.17257.1|Name=mRNA_Ecto-sp13_S_contig64729.17257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MRSSRGWEPAMRSSEGCRLSWRRCWKRQRLFPPRRGTLLSSSTSLGEALR
RSTASGWHGRSRSTSSRPFR
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mRNA from alignment at Ecto-sp13_S_contig64729:48..756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64729.17257.1 ID=mRNA_Ecto-sp13_S_contig64729.17257.1|Name=mRNA_Ecto-sp13_S_contig64729.17257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=709bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64729:48..756- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATGCGGTCTTCGCGAGGGTGGGAGCCGGCGATGCGCAGCAGCGAGGG
GTGTCGACTTTCATGGCGGAGATGTTGGAAGCGTCAGCGATTATTTCCGC
CGCGTCGAGGGACTCTCTTATCATCATCGACGAGCTTGGGCGAGGTCTGT
GTCGGTGTATGTGTTTTTGTTGTTTAGCGGTTCTGTGTTCTTCTTGGTGA
CCTTCCGGGTCTCTCTGGCCCTCTTGGATGGTTTTACAATGGTCGTGTGT
AGTGTTTTCTCGTCTTGACTTGAACATGATACATGTGCGTGGGTTCGACG
CGTATCATGTCGATGGATCAGAGAGAGAGGGAGAGAGAGAGAGAGAGTTT
GTGGTCACGAGAAATGGACTTTGATCGCTGACAGGCAAGGTTGGGGCTGC
CTTCGTCTACTATTATAGTTGTTCGACCACCGACTAGTCCCTGACGAGTT
TGCGACTGATTACTGGATCGCGAAAGTACACCAAGCATTGCAGAGCCGAG
CGGAGCTTCTAGATGATGCCGTCCTTCGCTTCGATGGAACAGGCTCCCCT
ACAGATATCGCTCATGTCTCTCCTCCTTGCTCTATTTCCCTTTCGCCCCT
TTTTGGCAACACAACCACGCCAATACGTGAACGATAACAGGCACTTCGAC
GTTCGACGGCTTCGGGTTGGCATGGTCGATCTCGGAGCACATCGTCAAGA
CCATTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64729:48..756-

>mRNA_Ecto-sp13_S_contig64729.17257.1 ID=mRNA_Ecto-sp13_S_contig64729.17257.1|Name=mRNA_Ecto-sp13_S_contig64729.17257.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64729:48..756- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTCTTCGCGAGGGTGGGAGCCGGCGATGCGCAGCAGCGAGGGGTG
TCGACTTTCATGGCGGAGATGTTGGAAGCGTCAGCGATTATTTCCGCCGC
GTCGAGGGACTCTCTTATCATCATCGACGAGCTTGGGCGAGGCACTTCGA
CGTTCGACGGCTTCGGGTTGGCATGGTCGATCTCGGAGCACATCGTCAAG
ACCATTCAGG
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