mRNA_Ecto-sp13_S_contig6472.17255.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6472.17255.1
Unique NamemRNA_Ecto-sp13_S_contig6472.17255.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6472.17255.1 vs. uniprot
Match: A0A6H5JV36_9PHAE (Serine/threonine-protein phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV36_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 2.850e-85
Identity = 138/143 (96.50%), Postives = 142/143 (99.30%), Query Frame = 1 
Query:    1 MKEDAQLPTLDESVPVDGAAMSGQNDNTETYFMATNTEGDDTGVTLDSIHMEDAARPMPSLLRIGSVSVSLGEGTEDNLMDYSLSKAPPTMATVEEVMQLFESGGQLSTKTVRKILRDAYKHLKGLGNINKVPLNSTEESVTV 429
            MKEDAQLPTLDESVP+DGAAMSGQ DNTETYFMATNT+GDDTGVTLDSIHMEDAARP+PSLLRIGSVSVSLGEGTE+NLMDYSLSKAPPTMATVEEVMQLFESGGQLSTKTVRKILRDAYKHLKGLGNINKVPLNSTEESVTV
Sbjct:   89 MKEDAQLPTLDESVPIDGAAMSGQTDNTETYFMATNTDGDDTGVTLDSIHMEDAARPVPSLLRIGSVSVSLGEGTEENLMDYSLSKAPPTMATVEEVMQLFESGGQLSTKTVRKILRDAYKHLKGLGNINKVPLNSTEESVTV 231
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BLAST of mRNA_Ecto-sp13_S_contig6472.17255.1 vs. uniprot
Match: A0A836CDI6_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDI6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.840e-19
Identity = 45/90 (50.00%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:  160 AARPMPSLLRIGSVSVSLGEGTEDNLMDYSLSKAPPTMATVEEVMQLFESGGQLSTKTVRKILRDAYKHLKGLGNINKVPLNSTEESVTV 429
            ++ P P L+RIGSV V LG    ++L DY+L+K P T+  V+EV+QL+ SGG+LS +++R+ILR+AYK LK + N+  VP++S  E+VTV
Sbjct:  105 SSAPKPPLVRIGSVDVQLGGIAPEDLQDYNLAKEPITLHMVQEVLQLYSSGGKLSVRSLRRILREAYKLLKAMPNVMHVPIDSNTETVTV 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6472.17255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV36_9PHAE2.850e-8596.50Serine/threonine-protein phosphatase n=2 Tax=Ectoc... [more]
A0A836CDI6_9STRA1.840e-1950.00Serine/threonine-protein phosphatase n=1 Tax=Tribo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6472contigEcto-sp13_S_contig6472:5958..8221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size429
Hectar predicted targeting categoryother localisation
Exons3
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.5979178-CDS-Ecto-sp13_S_contig6472:5957..61221681463893.5979178-CDS-Ecto-sp13_S_contig6472:5957..6122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6472 5958..6122 +
1681463893.6103637-CDS-Ecto-sp13_S_contig6472:7358..75111681463893.6103637-CDS-Ecto-sp13_S_contig6472:7358..7511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6472 7359..7511 +
1681463893.622828-CDS-Ecto-sp13_S_contig6472:8110..82211681463893.622828-CDS-Ecto-sp13_S_contig6472:8110..8221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6472 8111..8221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6472.17255.1prot_Ecto-sp13_S_contig6472.17255.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6472 5958..8221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6472.17255.1

>prot_Ecto-sp13_S_contig6472.17255.1 ID=prot_Ecto-sp13_S_contig6472.17255.1|Name=mRNA_Ecto-sp13_S_contig6472.17255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MKEDAQLPTLDESVPVDGAAMSGQNDNTETYFMATNTEGDDTGVTLDSIH
MEDAARPMPSLLRIGSVSVSLGEGTEDNLMDYSLSKAPPTMATVEEVMQL
FESGGQLSTKTVRKILRDAYKHLKGLGNINKVPLNSTEESVTV
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mRNA from alignment at Ecto-sp13_S_contig6472:5958..8221+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6472.17255.1 ID=mRNA_Ecto-sp13_S_contig6472.17255.1|Name=mRNA_Ecto-sp13_S_contig6472.17255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6472:5958..8221+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGGACGCGCAGCTGCCGACCCTGGATGAGTCGGTCCCCGTCGA
CGGCGCCGCCATGTCGGGGCAGAACGACAACACTGAGACGTATTTCATGG
CGACCAACACGGAGGGAGACGACACGGGGGTCACGCTGGACAGCATCCAC
ATGGAAGACGCGGCGGTGAGGAGATGTTGATGGTGACGGTTGGGGGGGGG
GTACTCATAGTCGTGCATGCCGTAGTGGTTAGACCATTGACCTCGCATCC
CTACAAAGCCGGGACCGAGCACGCCGGGTTCTCGCCGGGCTAGGCTCTCA
CGTCACCACAAGCGCGGAGCGCCGTGAGGTGTTCGGTGAGTCGCACGGAG
GGTGCGCTGCATCCTGCCAAGGTTGTGGGGGTGGGGGTGATTGTCGGGGG
TGGTGGTGGCGACGGCGGCAGTCGTGCATGCCGTAGTGGTTAGACCATTG
ACCTCGCATCCCTACAAAGCCGGGACCGAGCACGCCGGGTTCTCGCCGGG
CTAGGCTCTCACGTCACCACAAGCGCGAAGCGCCGTGAGGTGTTCGGTGA
GTCGCACGGAGGGTGCGCTGCATCCTGCCAAGGTTGTGGGGGTGGGGGTG
ATTGTCGAGGGTGGTGGTGGCGACGGCGGCCGCAGTAGAGGCTGCAGGGA
TGGTGGTGGCGGTGGTGTGCTGCCGCTGCTGCTGCTGCTGCTGCTTCTGT
TTCTATTCCTCGTGGTAAATGGTGTTGTTGCAGTTGTATCGTTGCTGCTG
AAGACGGTGTTCTTGTTGCAGCGATTGTGGCGGCCTCCCCGCAAGCGTGC
TCGTTGGGAGCGGCACTGTCTTTCTCGCGAGTGAATGTTTGCCCCCGCTC
AAACGGGGACGGTAGGTAGTGTATGCGTGCCAAATGCCTGTTAATATCAA
TCCACCCAATGAAAAGGGGGAGGGGTGCCTTTCTGCGTCATGCTGATGTG
GGGTATCAAGCATCTTTCTCAGATCTCACGGACCTATTTCTGATTCGTGT
TGTGTCGGATATCACCCTCTCTTTCTCATTCGTTGTGTTGATCGTCCGCT
CACGCCCCCCCTCTGGTTCATCCTTATGAAACATTGCCTGGCGGTCGAAG
CCGGGCATATCGCGCCGTCCCGTCTTTGTAGGGATGCGAGGTCAATGGTC
TAACGACTAAGACATGCACAACTATGAGGACATCCCGCCCCTCCTTATTT
GAGCCAACTTTGGCAAAGTAGGAAGGAACGATTGGCCAACGGTTCTGTGG
GAACAATCCTCCGTCCTCTCGAAGGCGCGTGATCAATGGTCTACCGACCA
CGGCAAACATTTACACGAGCATCCCCCCCCCCCCCTCCCCTCTCCAATCA
TGTTACCCTTTGGTGTGTTTGGCTCCCCTCGTTGGCGCCCTCTTGTGTCA
GCGCCCGATGCCCTCCTTGCTTCGCATCGGTAGCGTCAGCGTTAGCCTGG
GAGAGGGCACCGAGGACAATCTGATGGACTACTCGCTCTCCAAGGCGCCG
CCCACCATGGCGACCGTCGAGGAGGTCATGCAGCTCTTCGAGAGTGGGGG
GCAGGTGAGGCGAGCTATACTTGTATAGCGAAAGAAAATGCGTTGCTGTT
GAGTGTTGTGCTGCTGCTGATGTTGTTGTGGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTCTCCACATTGAAAACCGTTCCGTTATCTCTACCCGTAACTT
CTTCTGTTCGTACTAGTCTAACATTTGACGCGGTCGATTCCCGTGGTCAC
AGGCTAACTTACCCCAAAAAGGCATGTGGTGGAATGGGCATTTATTGTGG
GCAAAATAGGTTCTTTGACGGTTTCGGGTGCTCCTCGGCTTCCCTGTTTC
GTGCGGGGCGGGGGGGGGGGGGCTGTGCGCAACAACCAGTCGGTCTTGCC
TAAGAAGTTCTATTTAGTGGCATCCCGCCGACGCCGCTCTGCCCGAGATG
GCGTAGTGGATTGGGGAATTGTCCCATGAGAAGAAAATATGCACAGCACG
CCTAGAGACATCCCGCCCCCCGCCCCCCGCTGAGGCAAGTAAAAGTGCAG
CCAACGATAACGTCATCTATACCCCTCGTTTGGGTGGTCCTGTTTGTTGT
TTCGTCCCAACGATCGTATTGTGTTGAATGGTCTTGTATTGTGTTGTATT
CAGTTGAGCACCAAGACAGTCCGGAAGATCCTGAGAGACGCCTACAAGCA
CCTCAAGGGCCTGGGCAACATCAACAAGGTGCCGCTCAACTCGACGGAGG
AAAGCGTCACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6472:5958..8221+

>mRNA_Ecto-sp13_S_contig6472.17255.1 ID=mRNA_Ecto-sp13_S_contig6472.17255.1|Name=mRNA_Ecto-sp13_S_contig6472.17255.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6472:5958..8221+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGGACGCGCAGCTGCCGACCCTGGATGAGTCGGTCCCCGTCGA
CGGCGCCGCCATGTCGGGGCAGAACGACAACACTGAGACGTATTTCATGG
CGACCAACACGGAGGGAGACGACACGGGGGTCACGCTGGACAGCATCCAC
ATGGAAGACGCGGCGCGCCCGATGCCCTCCTTGCTTCGCATCGGTAGCGT
CAGCGTTAGCCTGGGAGAGGGCACCGAGGACAATCTGATGGACTACTCGC
TCTCCAAGGCGCCGCCCACCATGGCGACCGTCGAGGAGGTCATGCAGCTC
TTCGAGAGTGGGGGGCAGTTGAGCACCAAGACAGTCCGGAAGATCCTGAG
AGACGCCTACAAGCACCTCAAGGGCCTGGGCAACATCAACAAGGTGCCGC
TCAACTCGACGGAGGAAAGCGTCACGGTG
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