mRNA_Ecto-sp13_S_contig647.17249.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A6H5KPD3_9PHAE (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPD3_9PHAE) HSP 1 Score: 355 bits (911), Expect = 3.230e-118 Identity = 186/191 (97.38%), Postives = 187/191 (97.91%), Query Frame = 1
Query: 1 VSSAMGISFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGGLVSEITLNKAIILFGAVFMVMGTMVTLKEAGAHH 573
+ SAMGISFGVFTTMMLFGFRTFG AAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRT CIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGA GGLVSEITLNKAIILFGAVFMVMGTMVTLKEAGAHH
Sbjct: 374 IGSAMGISFGVFTTMMLFGFRTFGAAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTGCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGANGGLVSEITLNKAIILFGAVFMVMGTMVTLKEAGAHH 564
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A835YIC2_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIC2_9STRA) HSP 1 Score: 206 bits (524), Expect = 1.390e-61 Identity = 109/191 (57.07%), Postives = 135/191 (70.68%), Query Frame = 1
Query: 1 VSSAMGISFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGGLVSEITLNKAIILFGAVFMVMGTMVTLKEAGAHH 573
+ + S VF MMLFGFRTFG AAQ LLLNNYHR+ DPL +AR ATG +I+CG+P+MF+ALKTS NA EI KFG + RF D LRT+ V L+AV+ +IAC KSEEDVA ++GLIGA+LGSGAN+IIPAVLN+ L +RLG KGG SE LN+ +++ G VFM +GT L +A HH
Sbjct: 244 IGGGVAASMCVFVAMMLFGFRTFGTAAQPLLLNNYHRSADPLVGVARFATGCAIVCGYPIMFSALKTSSTNAVHEILNKFG-ATRALGKRFLTDANLRTAWAVGLLAVIIAIACDKSEEDVADVVGLIGALLGSGANFIIPAVLNLQLFRRLGRKGGAFSETGLNRLLVVAGFVFMYIGTKSVLGDASKHH 433
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A4D9DBF3_9STRA (Aa_trans domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBF3_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.410e-38 Identity = 87/189 (46.03%), Postives = 117/189 (61.90%), Query Frame = 1
Query: 4 SSAMGI----SFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGGLVSEITLNKAIILFGAVFMVMGTMVTLKE 558
S A+G+ SF VF MM+FGF TFG AAQ LLLNNYHRT D LA+ +RLAT FSI+CGFPLMFA LKT FF+ E ++ ++D + T + L+A + IAC +EEDV +IG+IGA+LG+ YIIPA+LN LL R+ E N+ +I+ G VF ++GT + + +
Sbjct: 287 SGAVGLGFLASFAVFALMMVFGFGTFGFAAQPLLLNNYHRTQDALATGSRLATAFSIMCGFPLMFAGLKTGFFSLWHSNVESARRLSPRLRVALKSDTVIATVSSL-LLAAICGIACLCTEEDVGFVIGVIGAVLGTSVVYIIPALLNTKLLARVKDTAVAKPEKRFNQGLIVIGVVFALLGTYMAIDD 474
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: W7TM90_9STRA (Pentatricopeptide repeat containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM90_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.710e-38 Identity = 88/189 (46.56%), Postives = 118/189 (62.43%), Query Frame = 1
Query: 4 SSAMGI----SFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGGLVSEITLNKAIILFGAVFMVMGTMVTLKE 558
S A+G+ SF VF MM+FGF TFG AAQ LLLNNYHRT D LA+ +RLAT FSI+CGFPLMFA LKT FF+ E ++ ++D + T + L+A + IAC +EEDV +IG+IGA+LG+ YIIPA+LN LL R+ G E N+ +I+ G VF ++GT + + +
Sbjct: 1386 SGAVGLGFLASFSVFALMMVFGFGTFGFAAQPLLLNNYHRTQDALATGSRLATAFSIMCGFPLMFAGLKTGFFSLWHSNVESARRLSPRLRVALKSDTVIATVSSL-LLAAICGIACLCTEEDVGFVIGVIGAVLGTSVVYIIPALLNTKLLARVKDTGVAKPEKRFNQGLIVIGVVFALLGTYMAIDD 1573
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A7S3YMY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMY5_HETAK) HSP 1 Score: 130 bits (327), Expect = 4.020e-35 Identity = 81/176 (46.02%), Postives = 111/176 (63.07%), Query Frame = 1
Query: 43 MMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVS--LMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLL--QRLGAKGGLVSEITLNKAIILFGAVFMVMGTMVTLKE 558
MM FGF+TFG AQ LLLNNYH+T D AS AR A G +I+CG+PLMF A KT+FF S +S+ G K+ + Q ++S ++AV+T+IAC SE+DV +IG++GA+LG+ A YI+PA++N+ L Q L G EI NK ++ G VF ++GT VT E
Sbjct: 1 MMGFGFKTFGLNAQPLLLNNYHKTADFGASWARAAVGLAIVCGYPLMFMACKTAFFALLSHVSD-----GKKVTPKGQ--------AVISTGVLAVITAIACKCSEKDVGFVIGIVGALLGAFACYIMPALINLGLASKQALDLSKG---EIIFNKLLLALGVVFAILGTAVTCLE 160
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A7S3XLX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLX7_HETAK) HSP 1 Score: 137 bits (345), Expect = 1.580e-34 Identity = 77/157 (49.04%), Postives = 106/157 (67.52%), Query Frame = 1
Query: 4 SSAMGISFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNA-ASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGG 471
++ MG++ GVF MM FGFRTFG AAQ LLLNNYH+T+DPLA+ AR ATGF+ILCG+PLMFA K F A A+ + G GL+ R + D + V+ + +T++A +EEDV +IGLIGA+LGS A +I+PAV+N+ + + L + G
Sbjct: 390 TTGMGVALGVFLLMMTFGFRTFGYAAQALLLNNYHQTEDPLATGARAATGFAILCGYPLMFAGFKAGAFPALAAALGRVRGTQGLR--ARLRADPKTQNLVSVAALGSITAVAAQCTEEDVGAVIGLIGALLGSFACFIMPAVVNLRVNKLLVRQRG 544
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: B7FRQ8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRQ8_PHATC) HSP 1 Score: 120 bits (302), Expect = 1.400e-28 Identity = 71/183 (38.80%), Postives = 108/183 (59.02%), Query Frame = 1
Query: 31 VFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCI-VSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGGLVS------EITLNKAIILFGAVFMVMGTMVTLKE 558
VF MM+ GF TFG +Q LLLNNYH + D +A+ ARL TG +I+ G+ LMFA LK + F+ LK+ + L+ + I +++ + AC +E ++AT+IG++G++ GS YI PA++NISLL + KG ++ E+ NK +ILFGA+F V+GT ++L
Sbjct: 355 VFWCMMMLGFATFGKHSQALLLNNYHSSVDLMATAARLFTGIAIISGYALMFAGLKAALFSL------------LKLDQPNTTNRDLKQNTISFGILSAIAVAACFVTEHELATVIGIVGSVFGSVVIYIFPAIVNISLLAKKNKKGNRIAALFFPGEVLFNKLMILFGAMFAVLGTWISLAS 525
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A1Z5K500_FISSO (Aa_trans domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K500_FISSO) HSP 1 Score: 120 bits (301), Expect = 1.500e-28 Identity = 70/187 (37.43%), Postives = 107/187 (57.22%), Query Frame = 1
Query: 31 VFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGGLV------SEITLNKAIILFGAVFMVMGTMVTLKEAGAHH 573
VF MM+ G+ TFG +Q LLLN+YH + D +A+ AR TG +I+ G+ LMFA LK + F S + EK R Q + VSL+ ++ + AC +E ++AT+IG++G++ GS Y+ PA++N LL KG + E+ NK +++FG VF ++GT ++L E G HH
Sbjct: 327 VFFCMMILGYATFGSNSQALLLNHYHGSQDVMATTARAFTGLAIISGYALMFAGLKAALF---SLLKEK----------RPQQQKAWS----VSLLTLIATAACFVTEAELATVIGIVGSVFGSVVIYMFPAIVNFKLLNMKDKKGKNIVQPLFSGEMAFNKLMVVFGIVFAILGTWISLAEGGGHH 496
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A7S1UC63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC63_9STRA) HSP 1 Score: 117 bits (294), Expect = 6.210e-28 Identity = 79/181 (43.65%), Postives = 105/181 (58.01%), Query Frame = 1
Query: 1 VSSAMGISFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQRLGAKGGLVS--EITLNKAIILFGAVFMVMG 537
+ +AMG +F ML G TFG ++QTLLLNNY DD LA+ ARLATGF+IL GFPLMF ALKTS + G G+ V+++A V +IA +EE++ +IGLIGA+LGS Y+IPAVLN+ L QR A G V+ E+ + A+ F VF ++G
Sbjct: 249 MGTAMGSVGLIFVLFMLLGHATFGSSSQTLLLNNY-AGDDTLAAFARLATGFAILSGFPLMFFALKTSVSSLLHRYRVDLGADGMD-------------KLTVAMLASVAAIATQTTEENLGIVIGLIGAVLGSALGYVIPAVLNLKLAQRKKAAGRPVADAEVAGDHALGGFCVVFAMLG 415
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Match: A0A448Z7B9_9STRA (Aa_trans domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7B9_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.780e-18 Identity = 68/187 (36.36%), Postives = 99/187 (52.94%), Query Frame = 1
Query: 4 SSAMGISFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSILCGFPLMFAALKTSFFNAASEISEKFGDGGLKMAGRFQNDETLRTSCIVSLMAVVTSIACTKSEEDVATIIGLIGAILGSGANYIIPAVLNISLLQ-RLGAKGGLVSEITLNKAIILFGAVFMVMGTMVTLKEA 561
+SA F ++TT M+ G+ TFG Q +L NYH DD L++ R+ATGFSIL GFPL+ + + AS FG+ GL G +N+ L + ++ VT I+CT DV+ ++GL GA LGS YI P +L + R G +N A++ FG ++G +T+KEA
Sbjct: 312 NSAYTTLFLLYTTAMIAGYXTFGDVCQGNILLNYH-PDDLLSTFGRVATGFSILFGFPLVVFGAREAIIGLASN----FGNAGL---GSEKNNFNL----VAGILTFVTIISCTV--RDVSLVVGLTGAALGSALVYICPPLLYTKAVALRYGNDSVASKRAKMNLALVPFGVCIGILGCFMTMKEA 484 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig647.17249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig647.17249.1 >prot_Ecto-sp13_S_contig647.17249.1 ID=prot_Ecto-sp13_S_contig647.17249.1|Name=mRNA_Ecto-sp13_S_contig647.17249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp MGISFGVFTTMMLFGFRTFGGAAQTLLLNNYHRTDDPLASLARLATGFSIback to top mRNA from alignment at Ecto-sp13_S_contig647:180..2067+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig647.17249.1 ID=mRNA_Ecto-sp13_S_contig647.17249.1|Name=mRNA_Ecto-sp13_S_contig647.17249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1888bp|location=Sequence derived from alignment at Ecto-sp13_S_contig647:180..2067+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig647:180..2067+ >mRNA_Ecto-sp13_S_contig647.17249.1 ID=mRNA_Ecto-sp13_S_contig647.17249.1|Name=mRNA_Ecto-sp13_S_contig647.17249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig647:180..2067+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |