mRNA_Ecto-sp13_S_contig647.17252.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig647.17252.1
Unique NamemRNA_Ecto-sp13_S_contig647.17252.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig647.17252.1 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.320e-12
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:  114 GSLLFEDAARPFRTYRLVFSPLDTQGENATYF*GEERTEAVRQGETRG 257
            GSLL EDAARPF TYRLVFSPLDTQGENATYF GE+RT   + G   G
Sbjct:   22 GSLLVEDAARPFGTYRLVFSPLDTQGENATYFQGEKRTRGRQAGRNVG 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig647.17252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPY4_9PHAE5.320e-1275.00Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig647contigEcto-sp13_S_contig647:17218..19160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size331
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.1519332-CDS-Ecto-sp13_S_contig647:17217..173061681463893.1519332-CDS-Ecto-sp13_S_contig647:17217..17306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig647 17218..17306 +
1681463893.1638918-CDS-Ecto-sp13_S_contig647:18918..190091681463893.1638918-CDS-Ecto-sp13_S_contig647:18918..19009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig647 18919..19009 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.1749804-UTR-Ecto-sp13_S_contig647:19009..191601681463893.1749804-UTR-Ecto-sp13_S_contig647:19009..19160Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig647 19010..19160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig647.17252.1prot_Ecto-sp13_S_contig647.17252.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig647 17218..19009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig647.17252.1

>prot_Ecto-sp13_S_contig647.17252.1 ID=prot_Ecto-sp13_S_contig647.17252.1|Name=mRNA_Ecto-sp13_S_contig647.17252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
KHESELGRERGGENVPGWRTGDRLKPQRHSLHRQTRRQAVCCSKTRRAPF
ARIGWCFPP*
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mRNA from alignment at Ecto-sp13_S_contig647:17218..19160+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig647.17252.1 ID=mRNA_Ecto-sp13_S_contig647.17252.1|Name=mRNA_Ecto-sp13_S_contig647.17252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1943bp|location=Sequence derived from alignment at Ecto-sp13_S_contig647:17218..19160+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACACGAAAGCGAGTTGGGGAGAGAGAGAGGTGGCGAAAACGTACCTGG
GTGGCGAACGGGGGATCGTCTGAAGCCCCAAAGGCACAGGTGCGTGGGGA
ATGACCAATTTGTTGGCTTGGGAGGGTCCTGCTTGCGAGGTAACCCCTGG
TTGCAGAGTGGTTTGGGCGAAGTCGGTCGTATCGAGATTTCGGACTTTCG
GGCGATATACGCCGCCCCCGCCGCGGGCCACGGAGAGGGCAACACGCTCC
CCCTAAATTCAAGGTGCTCTGCGTGTCTCGGTTGTGTTTTTGTGTGTTCC
TTCGTCGCAGAGCGGCTGGTCGCCGTTTTTCGGCGCCGTAACAAAGCGTA
CCGAGGAACCGCCTCCGGCCCGCGTTATCTCGCAAAATTGGTCGATTTTT
TCGACGTGGACATTTTTATTTTTTCGTCGATTTTTTTTTGTGTTTTTCAG
GCGACGCTCCGCGCGCCCAAACGCCGAGGACTGAGCGCAGTCGACTGCGT
GAAGATTGAGTGTTGCGGCGTGAATCCTTCTTTGCTGCGGTTGGTCGCTT
TTTGTTTGTGTCGAGGATCGATCGCGCGGTGTGTTTATTCTTGGGCGTTG
GATGAACGTCCAGAAGTGACTCGAAGAGTATTTTTTAATTTTCGAATGAG
ATGGTATGCCACACTATATTCCCGATCAATAGAGATACTGTGTATTTTAA
CACCGGGAACCTTCTGATGTTGTGCCATGTGCGAAACGATTACAACGGCG
GCAATGATCTACTGCTTGGATGTAGTGTGTGTTCACCTCGACGCGGTGTC
GTCGGTGTGCTCTAGTAGGTACGTTAGGCATGTCTGCCCAAGTCATGGAG
AGCAGTGTTACTGACTTGCAACATGTTGAATGCACACTGCTGCTGTTGGT
TGTTGGCCTACACGTTGCCATGTGTAGAATGGCCGCTGGTGTTGATTGCT
TCCTACTGCGTGTTAAACATGCGGCGGAGGCCGCACCGCGGGCAGCTATG
CCGTGATCTCGGCGCGAGCTATTTTCTTCACCGGGGTTGCTTTGGAAGGT
TAACGCAGAGTTCATGTATGTTTCAGTGTGATTGTCACTGTTACCTCTTG
AAGTACTGTAAAAGGTCATGAACACACTCATGCATGACATGGACATCGTC
CCGCAACTGCTGTGTGCATACCGGCCTGTGGGGTAGACTCTTCGTGGTCC
CGCGCGGATCTCAGGTTCTACAGCAGTACCTACAAATACGCTCCGATCTT
GAATTCTGTTCTTGTATAGAGTGTGGGTAGCCCGCCGATCTGTTGCCTAT
CGCGAGAAAGAGTGGCAGAATATCAATTCCACGTGCTCCGTTGTGGAGTA
CGAAACGTGACACGACGTTGCGAATTTGTCGCTTCTTACTGCGGTTGGTC
ATGACATGCTGCTTGCCAAGGGCAGCACACGATCCCCGTCGTGTCTCGTG
TCTTTTCCGCGTGATTTTGGTGCGTGGATTTTTTAGTTAAGGCACATGTT
TCTTTGCGGGCACCGCGTTCTCTGCTTGGTTGACGCAACGACCTCCAAGT
CCCTCCGGGTGGGCTCATGATGTATTCCAAACTTGGTTCCCGAGGACGAC
GGTAATTTCGTACCCTAGAGTTTGGACGGTCGCGCCACCACCAAGAAGCC
ATCACTGCAACCCCCCCCCCCCCTCCCCATCCACCGTTGCTGTTTGCGCA
GTCTCCACAGGCAAACTCGACGGCAGGCAGTCTGCTGTTCGAAGACGCGG
CGCGCCCCTTTCGCACGTATCGGCTGGTGTTTTCCCCCCTAGACACCCAG
GGGGAGAACGCGACATATTTTTAAGGAGAGGAGAGGACGGAGGCCGTCAG
GCAGGGAGAAACGCGGGGATCACGGCGCAGCTAGCGCGATCAGGAGGAAC
GGGGGGCGAGGTTAGGGCCGAGCAGACGCAGCAGCCCCCCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig647:17218..19160+

>mRNA_Ecto-sp13_S_contig647.17252.1 ID=mRNA_Ecto-sp13_S_contig647.17252.1|Name=mRNA_Ecto-sp13_S_contig647.17252.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig647:17218..19160+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACACGAAAGCGAGTTGGGGAGAGAGAGAGGTGGCGAAAACGTACCTGG
GTGGCGAACGGGGGATCGTCTGAAGCCCCAAAGGCACAGTCTCCACAGGC
AAACTCGACGGCAGGCAGTCTGCTGTTCGAAGACGCGGCGCGCCCCTTTC
GCACGTATCGGCTGGTGTTTTCCCCCCTAG
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