mRNA_Ecto-sp13_S_contig647.17251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig647.17251.1
Unique NamemRNA_Ecto-sp13_S_contig647.17251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig647.17251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig647contigEcto-sp13_S_contig647:16902..17629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size570
Hectar predicted targeting categoryother localisation
Exons2
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.103977-UTR-Ecto-sp13_S_contig647:16901..169881681463893.103977-UTR-Ecto-sp13_S_contig647:16901..16988Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig647 16902..16988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463893.1146748-CDS-Ecto-sp13_S_contig647:16988..171051681463893.1146748-CDS-Ecto-sp13_S_contig647:16988..17105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig647 16989..17105 -
1681463893.123404-CDS-Ecto-sp13_S_contig647:17263..176291681463893.123404-CDS-Ecto-sp13_S_contig647:17263..17629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig647 17264..17629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig647.17251.1prot_Ecto-sp13_S_contig647.17251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig647 16989..17629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig647.17251.1

>prot_Ecto-sp13_S_contig647.17251.1 ID=prot_Ecto-sp13_S_contig647.17251.1|Name=mRNA_Ecto-sp13_S_contig647.17251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
CPRRKNRPILRDNAGRRRFLGTLCYGAEKRRPAALRRRNTQKHNRDTQST
LNLGGACCPLRGPRRGRRISPESPKSRYDRLRPNHSATRGYLASRTLPSQ
QIGHSPRTCAFGASDDPPFATQRTTAPAAAFLGWRSFPSTRSRRSVPRLR
RSTRLKRDIC*
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mRNA from alignment at Ecto-sp13_S_contig647:16902..17629-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig647.17251.1 ID=mRNA_Ecto-sp13_S_contig647.17251.1|Name=mRNA_Ecto-sp13_S_contig647.17251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig647:16902..17629- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCCACGTCGAAAAAATCGACCAATTTTGCGAGATAACGCGGGCCGGAG
GCGGTTCCTCGGTACGCTTTGTTACGGCGCCGAAAAACGGCGACCAGCCG
CTCTGCGACGAAGGAACACACAAAAACACAACCGAGACACGCAGAGCACC
TTGAATTTAGGGGGAGCGTGTTGCCCTCTCCGTGGCCCGCGGCGGGGGCG
GCGTATATCGCCCGAAAGTCCGAAATCTCGATACGACCGACTTCGCCCAA
ACCACTCTGCAACCAGGGGTTACCTCGCAAGCAGGACCCTCCCAAGCCAA
CAAATTGGTCATTCCCCACGCACCTGTGCCTTTGGGGCTTCAGACGATCC
CCCGTTCGCCACCCAGGTACGTTTTCGCCACCTCTCTCTCTCCCCAACTC
GCTTTCGTGTTTTGATGGAGTTCAGAATAACGCACGCCAACGGGGGGGAG
GGGATGCCAACGATTGTCATTTTCTCTTCTCTTTTGCTGTTTTTTTTTCC
TCTCGATCTCTGTCTCCTTCCCAGAGAACAACAGCTCCGGCGGCGGCGTT
TCTGGGGTGGCGCAGCTTCCCATCAACACGTTCCCGACGCAGTGTTCCAC
GCCTTCGACGATCAACTCGTCTGAAACGTGATATTTGCTAAACATAAATA
CCAAAATTGAAGTAAAACTATTTGAACAGCAGGTGCACTGTAATGAGGTA
ACTGGCATGATACGGTGCGAAATGCATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig647:16902..17629-

>mRNA_Ecto-sp13_S_contig647.17251.1 ID=mRNA_Ecto-sp13_S_contig647.17251.1|Name=mRNA_Ecto-sp13_S_contig647.17251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig647:16902..17629- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCCACGTCGAAAAAATCGACCAATTTTGCGAGATAACGCGGGCCGGAG
GCGGTTCCTCGGTACGCTTTGTTACGGCGCCGAAAAACGGCGACCAGCCG
CTCTGCGACGAAGGAACACACAAAAACACAACCGAGACACGCAGAGCACC
TTGAATTTAGGGGGAGCGTGTTGCCCTCTCCGTGGCCCGCGGCGGGGGCG
GCGTATATCGCCCGAAAGTCCGAAATCTCGATACGACCGACTTCGCCCAA
ACCACTCTGCAACCAGGGGTTACCTCGCAAGCAGGACCCTCCCAAGCCAA
CAAATTGGTCATTCCCCACGCACCTGTGCCTTTGGGGCTTCAGACGATCC
CCCGTTCGCCACCCAGAGAACAACAGCTCCGGCGGCGGCGTTTCTGGGGT
GGCGCAGCTTCCCATCAACACGTTCCCGACGCAGTGTTCCACGCCTTCGA
CGATCAACTCGTCTGAAACGTGATATTTGCTAA
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