prot_Ecto-sp13_S_contig6467.17246.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6467.17246.1
Unique Nameprot_Ecto-sp13_S_contig6467.17246.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length266
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 7.190e-114
Identity = 242/265 (91.32%), Postives = 244/265 (92.08%), Query Frame = 0 
Query:    1 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDAPAPSPTTPSPVFMXXXXXXVPPTSDINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIEILHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRFDDVQLQCLPFS 265
            MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISG+NQADSQWLSIIETEIMVYEGDAPAPSPTTP PV M      V PT+ INPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIE LHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXX  SSRFDDVQLQCLP S
Sbjct:  258 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVYEGDAPAPSPTTPPPVVMPMTPSPVSPTAGINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIETLHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPLLESXXXXXXXXXXXXXXXXXXXXXXXXXTLSSRFDDVQLQCLPSS 522
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 2.370e-76
Identity = 122/184 (66.30%), Postives = 148/184 (80.43%), Query Frame = 0 
Query:    1 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDAPAPSPTTPSPVFMXXXXXXVPPTSDINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIEILHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLE 184
            MY+GD+R RTV V+VDG LVTTWTSSGTT+ FESVD+SGA GQVVTI+G   +DS+WLSI+ETEIMVY G AP PSPTTP+          +PPT+D+N CFDST+DDYRC PS D P  + LNNCNFVD+D AD+PAC E FGK DI+ +++ FHDDLTTLP GVF GL+N++DMD+SYTGL+
Sbjct:  255 MYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVYNGVAPPPSPTTPA-----TPSPTLPPTTDLNVCFDSTSDDYRCLPSEDDPNTVYLNNCNFVDADGADIPACLEIFGKADIQFVYMPFHDDLTTLPVGVFSGLDNILDMDISYTGLQ 433
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.890e-18
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 0 
Query:    1 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDA---PAPSPTTPSPVF 84
            +Y+G +R RTVDV+VDG+L TTWTSSGTT  FE+VDLSG  GQ VT++G    DS+W+SI ET+IMV        P+PS TTP+PVF
Sbjct:  261 LYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLD-DSEWVSITETDIMVLSDSVVSPPSPSTTTPAPVF 346
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.080e-15
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 0 
Query:    1 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDA---PAPSPTTPSPVF 84
            +Y G +R RTVDVSVDG+L TTWTSSGTT  FE++DLSG  GQ +T++G    + +WLSI ETEIMV        P+ S  TP+PVF
Sbjct:  259 LYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTGVLD-NLEWLSIKETEIMVLSDGVVFPPSASSPTPAPVF 344
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.300e-15
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 0 
Query:    1 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDAPAPSPTTP 80
            M++G  R  ++ V VD ALVTTWTSSGTT  FE++DLSG +GQV+ I+G    DS+WLSIIE EIMV E D  +P PTTP
Sbjct:  245 MFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEITGVLD-DSEWLSIIEAEIMVLE-DGASPMPTTP 322
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.450e-13
Identity = 45/79 (56.96%), Postives = 53/79 (67.09%), Query Frame = 0 
Query:    1 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDL-SGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDAPAPSPT 78
            +Y GD R RT+DVSVDG LV TWTSSGTT  FES+    G  G V+ + G    DS+WLSIIETEIMV+  +   P PT
Sbjct:  321 LYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLD-DSEWLSIIETEIMVWPQNVVTPPPT 398
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 8.090e-11
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 0 
Query:    1 MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDA 72
            MY+GD RTRT+D+S+D    TTWTSSGTTT +E+++L     Q +++ G  + DS+WLSI+E EIM+ +G++
Sbjct:  105 MYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIELD-TMAQWISVVGVLE-DSEWLSIMEVEIMIEDGES 174
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D8LRJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.440e-9
Identity = 57/156 (36.54%), Postives = 79/156 (50.64%), Query Frame = 0 
Query:   52 QADSQWLSIIETEIMVY-EGD--APAPSPTTPSPVF-----------MXXXXXXVPPTSDINPCFDSTNDDYRCQPSVDQPAY-----IDLNNCNFVDSDAADLPACFESFGK---TDIEILHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLEY 185
            + D +WLSIIETEIMV  +GD     P PT                  XXXXX +PPT+ +NPC D  + DY CQ   D   Y     + L +C   D+D  D+ AC    G+   T I  L ++ + D+TT+P G+FE   ++    M++  LEY
Sbjct:   94 RGDREWLSIIETEIMVLSDGDDVVQTPGPTDGHEAIPTXXXXXXXXXXXXXXXVLPPTT-VNPCLDPLHADYACQGGEDDGLYPPPDSVVLTDCGLTDADWEDIKACLVVAGEETDTTITTLIMSGNPDITTVPEGLFEVSPSLAS-SMTWLSLEY 247
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5JSZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.420e-7
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 0 
Query:   95 TSDINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIEILHLTFHDDLTTLPAGVFEGL 170
            TS +N C DST+ D RCQ  +D    + L  C   D+D  DL +C E+ G   I  L+L+ H++LTTLP G+F GL
Sbjct:   18 TSAVNVCLDSTDAD-RCQ--IDANGNLSLGLCGITDADFDDLASCLEAAGPETITTLYLS-HNELTTLPEGIFGGL 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5L1V3_9PHAE7.190e-11491.32F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FL48_ECTSI2.370e-7666.30Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5KL74_9PHAE2.890e-1859.77F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KFA6_9PHAE4.080e-1556.32F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KH45_9PHAE5.300e-1560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZZ4_ECTSI1.450e-1356.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTH1_ECTSI8.090e-1150.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LRJ1_ECTSI3.440e-936.54Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JSZ2_9PHAE3.420e-744.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 170..193
e-value: 42.0
score: 8.1
coord: 194..217
e-value: 6.2
score: 15.0
coord: 218..241
e-value: 36.0
score: 8.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 196..252
e-value: 7.7E-10
score: 38.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 118..261
e-value: 6.4E-24
score: 86.1
NoneNo IPR availablePANTHERPTHR45836FAMILY NOT NAMEDcoord: 116..203
NoneNo IPR availablePANTHERPTHR45836:SF16LEUCINE-RICH REPEAT AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2coord: 158..252
coord: 116..203
NoneNo IPR availablePANTHERPTHR45836FAMILY NOT NAMEDcoord: 158..252
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 120..252

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6467contigEcto-sp13_S_contig6467:478..4083 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6467.17246.1mRNA_Ecto-sp13_S_contig6467.17246.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6467 478..7632 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6467.17246.1 ID=prot_Ecto-sp13_S_contig6467.17246.1|Name=mRNA_Ecto-sp13_S_contig6467.17246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGN
NQADSQWLSIIETEIMVYEGDAPAPSPTTPSPVFMPTTPSPVPPTSDINP
CFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIEI
LHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLEYLPAGVFSGLSGLTKL
SMHFSSIEGLPEDLFADTPLLESLEVSSAKLSTLPAGVFEPLTNLQSLTL
SSRFDDVQLQCLPFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf