mRNA_Ecto-sp13_S_contig6467.17246.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6467.17246.1
Unique NamemRNA_Ecto-sp13_S_contig6467.17246.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 436 bits (1120), Expect = 2.310e-144
Identity = 224/228 (98.25%), Postives = 226/228 (99.12%), Query Frame = 1 
Query:    1 MVLSRRSWATLAAAVASSRAVYGNYEAGTVMSVTPEASVFDTRTTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDNEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR 684
            MVL RRSWATLAAAVASSR VYGNYEAGTVMSVTPEASVFDTR+TLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLND+EWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR
Sbjct:    1 MVLPRRSWATLAAAVASSRTVYGNYEAGTVMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDDEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR 228
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 2.180e-85
Identity = 137/207 (66.18%), Postives = 169/207 (81.64%), Query Frame = 2 
Query:  695 LGGPCSISYDLGAEFNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGNNQADSQWLSIIETEIMVYEGDAPAPSPTTPSPVFMXXXXXXVPPTSDINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIEILHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLE 1315
            LGG CSISYDLGAE+++++L+L MY+GD+R RTV V+VDG LVTTWTSSGTT+ FESVD+SGA GQVVTI+G   +DS+WLSI+ETEIMVY G AP PSPTTP+          +PPT+D+N CFDST+DDYRC PS D P  + LNNCNFVD+D AD+PAC E FGK DI+ +++ FHDDLTTLP GVF GL+N++DMD+SYTGL+
Sbjct:  232 LGGLCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVYNGVAPPPSPTTPA-----TPSPTLPPTTDLNVCFDSTSDDYRCLPSEDDPNTVYLNNCNFVDADGADIPACLEIFGKADIQFVYMPFHDDLTTLPVGVFSGLDNILDMDISYTGLQ 433
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.950e-52
Identity = 113/214 (52.80%), Postives = 146/214 (68.22%), Query Frame = 1 
Query:   49 SSRAVYGNYEAGTVMSVTPEASVFDTRTTLPYG-CPPDGCVAANTRDGDMSD-ESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDNEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR 684
            SS A+    EA T+ +VT  A ++DT  T   G C P GC+  NTRDGD +  ESRWSC+P+L  +GS C IT+ L     L  + IA+YKGD RTRT+++ +D    T WTSSGTTT FE++ +   G+ +++VG L D+EWLSI+EVEI VDDG+ D D V     VEA  +G VTAT+ L+D RLGD+ GCDP GCTA LTRDGD+S+GSR
Sbjct:   18 SSSALAAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDTMGRWIDIVGVLEDSEWLSIMEVEILVDDGVTDTDDVAGTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDGSR 231
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.600e-52
Identity = 110/204 (53.92%), Postives = 142/204 (69.61%), Query Frame = 1 
Query:   76 EAGTVMSVTPEASVFDTRTTLPYGCPPDGCVAANTRDGDMSD-ESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDNEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR 684
            EA T+ +VT  A ++D R +   GC P GCVA  TRDGD +  ESRWSC+P+L  +GS C IT+ L     L  + IA++KGD RTRT+++ +D    T WTSSGTT GFE++ +   G+ +E+VG L D+EWLSI+EVEI VDDG+ D D VV    VEA  +G VTAT+ L+D RLGD+ GCDP GCTA LTRDGD+S+ SR
Sbjct:   26 EASTLATVTAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPALGDAGSVCRITYGLGIQYQLTGLNIAMFKGDERTRTLEINIDNLPYTVWTSSGTTAGFETIEVDTTGRWIEIVGVLEDSEWLSIMEVEILVDDGVTDTDDVVDTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDESR 229
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.560e-46
Identity = 104/207 (50.24%), Postives = 135/207 (65.22%), Query Frame = 1 
Query:   76 EAGTVMSVTPEASVFDTRTTLPYGCPPDGCVAANTRDGDMSD-ESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDNEWLSILEVEIDVDDGIV---DDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR 684
            EA T+ +VT  A ++D R +   GC P GCVA  TRDGD +  ESRW+C+P+L  +GS C IT+ L     L  + IA+YKGD RTRT+++ +D    TTWTSSGTTTGFE++ L   G+ + +VG L D+EWLSI+EV+I +DDG     DD+T      VEA+ +G+VTA A  YD RL    GCDP GC    TRDGD+S  SR
Sbjct:    9 EASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMGRWISIVGVLADSEWLSIMEVKIMIDDGETGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDGGCDPSGCVVDNTRDGDLSTASR 215
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.850e-44
Identity = 105/207 (50.72%), Postives = 134/207 (64.73%), Query Frame = 1 
Query:   76 EAGTVMSVTPEASVFDTRTTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMD-QGQVVELVGDLNDNEWLSILEVEIDVDDGIV---DDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR 684
            E G++ +VT EAS +D   T+  GC P GCVA NTRDGD+S  SRWSC P+L   G  C+I++ L  V  L ++R+A+YKG  R  T+++ VD   +TTWTSSGTT   E++ L    GQ VE+ G L+D+EWLSI+EVEI V+DG     DDDT      VEA+ +G+VT  A LYD  L    GCDP GC A  TRDGD+S  SR
Sbjct:  199 EVGSLGAVTVEASFYDPSLTVDGGCDPSGCVADNTRDGDLSTASRWSCAPTL---GGECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEITGVLDDSEWLSIVEVEIMVEDGDQGSGDDDTTTNTSAVEASTLGSVTVGASLYDPSLAVDGGCDPSGCVADNTRDGDLSAASR 402
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.340e-30
Identity = 78/160 (48.75%), Postives = 99/160 (61.88%), Query Frame = 1 
Query:   25 ATLAAAVASSRAVYGNYEAGTV-MSVTPEASVFDTRTTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMD--QGQVVELVGDLNDNEWLSILEVEI 495
            AT    VA+   ++   E GT   +VT  A +FD    +  GC P GC AA TRDGD  D SRWSC  +L   G+ CSI++ L +   L ++R+ALY GD R RTID+ VDG  + TWTSSGTT GFES+   D   G V+ L G L+D+EWLSI+E EI
Sbjct:  226 ATATPTVATPEQLWSAKEIGTQDTTVTTTADLFDPALAIDNGCDPAGCTAALTRDGDTGDASRWSCATNLGGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIETEI 385
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.730e-19
Identity = 68/159 (42.77%), Postives = 88/159 (55.35%), Query Frame = 1 
Query:   76 EAGTVMSVTPEASVFDTRTTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSL-----DASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELV-------GDLNDNEWLSILEVEIDVDDGIV 516
            EAG V +VT   + FD RT    GC PDGC   NTRDGD++D SRWSC   L      A+G  C + F L + + +  + +A  KGDTRTRT+++ V+G      TS GTT+G E+  L D G     V         L  +E+LSI+EVEI V D  V
Sbjct:  249 EAGEVTTVTVTTNAFDARTD-DDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFEL-DGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGDSTV 405
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D7G5L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-18
Identity = 54/70 (77.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:  475 SILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSR 684
            S+  VEI VDDG  DD + V  DVVEA E+GTVTATADLYD RLGDTVGCDP+GCTAALTRDGDMSE SR
Sbjct:   22 SVSMVEILVDDG--DDGSEV--DVVEAGELGTVTATADLYDDRLGDTVGCDPDGCTAALTRDGDMSEDSR 87
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BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Match: D8LRJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ1_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.480e-17
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:  373 WTSSGTTTGFESVLLMDQGQVVELVGDLNDNEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTR 657
            WTSSG T  FE++ L  QG V+ L G L D++WLSILEV I VDDG  +DD V V   VEA E+G V ++A+ YD RL DTVGCDP GC+AALTR
Sbjct:    5 WTSSGETAAFETIELGVQGTVIGLHGVLADSDWLSILEVGILVDDG--NDDGVAV---VEAGELGPVASSAEFYDLRLADTVGCDPAGCSAALTR 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6467.17246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5L1V3_9PHAE2.310e-14498.25F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FL48_ECTSI2.180e-8566.18Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5KL74_9PHAE1.950e-5252.80F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KFA6_9PHAE3.600e-5253.92F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KH45_9PHAE1.560e-4650.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH1_ECTSI1.850e-4450.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZZ4_ECTSI4.340e-3048.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G277_ECTSI4.730e-1942.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5L7_ECTSI1.100e-1877.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRJ1_ECTSI1.480e-1760.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6467contigEcto-sp13_S_contig6467:478..7632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score342.0
Seed ortholog evalue2.4e-91
Seed eggNOG ortholog2880.D7G2Y6
Model size1561
Hectar predicted targeting categoryother localisation
Exons13
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-09_004400.1
Cds size798
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.804039-CDS-Ecto-sp13_S_contig6467:477..5321681463892.804039-CDS-Ecto-sp13_S_contig6467:477..532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 478..532 -
1681463892.8149126-CDS-Ecto-sp13_S_contig6467:822..9661681463892.8149126-CDS-Ecto-sp13_S_contig6467:822..966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 823..966 -
1681463892.8241043-CDS-Ecto-sp13_S_contig6467:1829..19011681463892.8241043-CDS-Ecto-sp13_S_contig6467:1829..1901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 1830..1901 -
1681463892.833189-CDS-Ecto-sp13_S_contig6467:2500..25751681463892.833189-CDS-Ecto-sp13_S_contig6467:2500..2575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 2501..2575 -
1681463892.8420386-CDS-Ecto-sp13_S_contig6467:2740..28301681463892.8420386-CDS-Ecto-sp13_S_contig6467:2740..2830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 2741..2830 -
1681463892.8511364-CDS-Ecto-sp13_S_contig6467:3102..31751681463892.8511364-CDS-Ecto-sp13_S_contig6467:3102..3175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 3103..3175 -
1681463892.8626988-CDS-Ecto-sp13_S_contig6467:3501..36041681463892.8626988-CDS-Ecto-sp13_S_contig6467:3501..3604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 3502..3604 -
1681463892.8710213-CDS-Ecto-sp13_S_contig6467:3897..40831681463892.8710213-CDS-Ecto-sp13_S_contig6467:3897..4083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6467 3898..4083 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463892.8817606-UTR-Ecto-sp13_S_contig6467:4083..40851681463892.8817606-UTR-Ecto-sp13_S_contig6467:4083..4085Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6467 4084..4085 -
1681463892.89384-UTR-Ecto-sp13_S_contig6467:4351..44551681463892.89384-UTR-Ecto-sp13_S_contig6467:4351..4455Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6467 4352..4455 -
1681463892.9037838-UTR-Ecto-sp13_S_contig6467:4874..50451681463892.9037838-UTR-Ecto-sp13_S_contig6467:4874..5045Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6467 4875..5045 -
1681463892.9147253-UTR-Ecto-sp13_S_contig6467:5424..56061681463892.9147253-UTR-Ecto-sp13_S_contig6467:5424..5606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6467 5425..5606 -
1681463892.9258811-UTR-Ecto-sp13_S_contig6467:6875..69961681463892.9258811-UTR-Ecto-sp13_S_contig6467:6875..6996Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6467 6876..6996 -
1681463892.936202-UTR-Ecto-sp13_S_contig6467:7449..76321681463892.936202-UTR-Ecto-sp13_S_contig6467:7449..7632Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6467 7450..7632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6467.17246.1prot_Ecto-sp13_S_contig6467.17246.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6467 478..4083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6467.17246.1

>prot_Ecto-sp13_S_contig6467.17246.1 ID=prot_Ecto-sp13_S_contig6467.17246.1|Name=mRNA_Ecto-sp13_S_contig6467.17246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
MYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGN
NQADSQWLSIIETEIMVYEGDAPAPSPTTPSPVFMPTTPSPVPPTSDINP
CFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIEI
LHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLEYLPAGVFSGLSGLTKL
SMHFSSIEGLPEDLFADTPLLESLEVSSAKLSTLPAGVFEPLTNLQSLTL
SSRFDDVQLQCLPFS*
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mRNA from alignment at Ecto-sp13_S_contig6467:478..7632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6467.17246.1 ID=mRNA_Ecto-sp13_S_contig6467.17246.1|Name=mRNA_Ecto-sp13_S_contig6467.17246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6467:478..7632- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCCTCTCACGTCGTAGCTGGGCTACACTGGCGGCAGCTGTCGCGAG
TTCGCGGGCTGTGTATGGCAATTACGAAGCTGGCACCGTCATGAGCGTAA
CCCCGGAGGCCTCCGTGTTCGACACTCGTACGACCTTGCCCTACGGGTGT
CCGCCCGACGGTTGTGTGGCCGCTAACACGAGAGTGAGTGCGTGTAAGGC
TATGTACTGTAGCAACACAGCAGCGCGAGGCATGTGTCTAGCACACTGGA
CTGCTGTGCGGTACAAGCAGTTGCACCCGCTTAAAGTAGCACAACCACTG
CTGTTGAACCTCACATCACAAGTATTCTGTTTTGCACAAGCGGTAGGATG
AGGTTATGCATGTCCTCGGATAACCCATCTCATGATGGTTTGTTCCAAGC
AGATAAGCAGATGGCGATGGCGGCCAGACGTGTCTGGAACGCCGCGAAGC
CGTGCCTGGATTGCGAAACGCTTCTTACTCCTCGAGACTGCTCCCAGGAA
GAGACTTGTGTATATTTGGGACTGCTGTGGCCTGGTCGATCTCCGCCTCC
GGCTTCGCAAGAGCAATTTTTACCCGAAACCGCTTGCGAACAACACTCGT
CTGTTTCCTGCATTTTCGATTGTTGTTTTTTTCCAGGATGGCGACATGAG
CGATGAATCTCGCTGGTCGTGCCGCCCTTCCCTAGACGCTTCCGGCTCTG
GGTGCTCAATCACGTTTACGCTGGAAAAGGTGGAGTACCTCGGAGACATC
AGGATAGGTGAGCGTTCGGAACACACATCATTGAGGTCATCAGCACAAGT
AGGTTGGTTCATTTCCTTCAACAAACGTTAAAAAAAGTCATGCCGCACAC
ATACATATCGGTAGGCACCCTGGAGGGACGAAAAGGGCCGACTTTACTTT
CTCATGGGGTTTTTAGTTGTAGTCTAGTGCCCACCTCACGCAAGCTGCCT
ACGATGGGGGACACATCGTGTGGTACCATGCATACAGTACATGAGTGACG
ACGTTACACGCATATTTTTTAGTGGGTGAGGTGCTCTCTTCACTATTGCG
CCCGTTTTTCGTATCATGCCGCAGCTGCTACGGTACATAAGATCCACTTT
TCGCGAACGGTTACGGGACCCCAAGAATAAACGATACCCCACTGCCCCTT
CGCTGTATGTAGGAGTTTGACTCCCGGTAACCCTCGAAAAAAGTCAAAAT
ATCAAAGTGGGTTTCCACGTGTTGAAGAAGTACCAGTATTGTCTTGCACC
CTTGGTCAGCGCAATAGATTCGTTTCCAACATACGAAATCTTTTGAGGGT
CGTGCGAAGAGTCTTGCCACAAACCAGCACTCTTCGGCGTATTTTTTTTC
CCGACGATGGGAAGGAAGGGTGCTACCGTACCGCCGCTCAAGAAAAATAA
CCCGGGCGTTACAACAACGGGGTGTTACAAAAGCAGGGGAAAAATTACCC
CGTGGATGTAAGGAGTGTGCAGTTAGTAAATAAAAATACCCCGTGGATCC
CGTGGGTGTGTACACGAGACGCTCATACGTGAGCTCATTCCCAGGAATCT
GAGTTTTTGCCGCTCGGGACTAATACTGCTGTGCCGTGGTCGAGGTTTTG
GTCATGGAGTATCATTTGCGTTTGCTGAAATGGTTTAGGTACCAAGTAGA
CCCTTGTTTGGCCCCTGCCAGAATAAAGCACTGCGCACTAACATACGATC
GCGCTCTTGGATTGATGTTGTACACTGCTGCAATACGATAAAAATAGATG
GCAGTCGCCGCCCATCGCCTTCGAAATAGACCGCGCTTGCTTGTAGAACT
TCCCGGATAGGTAGACTTGCTAGAGCAGAGGGGGCAGTGGCACCAGAGGG
GAAGGAGGCGTTCGCAGAGTGGAGAGGGGGCCACATTTGTTTTCTTTAAA
CCTAGACCAGCCGCTCTCCACCAATAGTAGGCTATGTGGAAGGATCCTTA
AGCCGGCGAGAGGTACAGCAGTGCACGCCCGACACACTCACCGCCTGCTT
GTGATGACCACCTTGCCACGTCGCAGCGCTGTACAAGGGGGACACCCGGA
CGCGAACGATTGACATGTACGTGGACGGCCGCCACATCACGACCTGGACA
AGCTCGGGCACGACCACCGGATTCGAAAGCGTCTTGCTCATGGACCAAGG
ACAAGTCGTGGAGCTGGTCGGGGACCTGAATGACAACGAGTGGCTCAGCA
TCCTGGAGGTGCGTATATCCATCTATGTACGTAGTGCGTCTAGTTTCGTG
TTTTTCATACACTTCTTGTTTTCGGCAGAGCTTTTCAATCTTCTTCCTCA
TCGGTGTGGAGGCATCCACCACAGAGCATACTTGAAAACACCACTGCGAA
AGGGTCGATAGTGGCGGTTTCCTAGGTTGTGGCAAACCCTGCTGTTGTTG
CGCGTCGAGCCGCCGTTCGGGCCTCCAGTACGCCTACCTCAAGCACAAAC
GGGTCGATGGTGGCAGTTTTCATGGTTGTGGCAAGCACTACTGTTGTTGC
ACATGGAGCCGCCATTCGGTCGCGCAGCAAACCCACCTCAAGCTCGTCTG
CAGCACGAAACGTTTTTGCATGCTCACATCATCACAGGTGGAGATAGACG
TCGACGACGGCATTGTCGACGACGACACCGTCGTGGTCTTGGACGTTGTC
GAGGCTGCCGAGATGGGAACGGTGACGGCTACGGCCGATCTCTACGACAC
TCGCCTCGGAGACACCGTTGGCTGTGATCCTGAAGGGTGCACGGCAGCGC
TCACGAGGGTACGTGTGTGGCTCGTCTGCTCCGCGGCTGCATTGAATGTG
CTGCCATTCCCGTTTGCCCATGTTTCACGTATGTGCTTCCACATGTTGCT
AGGTGGGCATTTCGGCGCCCGACGCTATCATTTTGGACGTTCTCGCTGTT
GACGTCTGTTTTTGTCCCTCTGGCGTGCACAATTACCGCAAGAAACTCTA
CGGCTACCCCGAAGGAAACGTGCACCGGATGTCCCCCCCCCTGCAGTCAA
CCTAAGGATTGCTCTCTCTCTCTCTCTCGCTCTCTCTCTGGCTGTCTGTG
GCTGTCTGTGGCTGTCTGTGGCTGTCTGTGGCTGCCTCTGGCTGTCTCTG
GCTGTCTCTGGCTGTCTCTGGCTGTCTCTGGCAACCTCCGGCTGTCTTTC
TCCTTCCCTCTCCTTAAACGGCGGTAGGACGGTGACATGTCCGAAGGTTC
CAGGNNNNNNNNNNCTCGGTGGCCCTTGCAGCATCTCCTACGACCTCGGA
GCCGAGTTCAACGTCGAACAGCTTCGTCTTCGTAAGCACCCACTCACCAA
ATGACCTCAAAAATTTCGTTTGGAAATACACCGTCCTATCGTGTAATAAC
CTGAATGCTCGTATACTAGCAAGTTAATACCCTCTTAGATCCTAACGGGG
AGCTTGTCCGTGAGCTCTTCGCCGGTCGCGAGGTGAAAATCTTGAACGCT
ACAATTCATAAGTATGTCTTGCGTGCGATCAATCCAGGTCTCATTGATCC
CTTCCCGCCAAATCACTAAGGATCTTTCTCCCCCCCCCCCCCCACAGGCA
TGTACAGGGGGGACAGCAGAACGCGCACCGTAGATGTCTCTGTCGATGGC
GCCCTGGTGACCACCTGGACGAGTTCGGGGACAACGACCGAGTTCGAGAG
CGTCGACCTATCTGGAGCGTACGGTCAAGTCGTCACCATCTCGGGCAACA
ACCAGGCTGACTCGCAATGGCTAAGCATCATCGAGGTTCGTCCGCCAGTC
ATAATTTTTTGCCGTTTAGCTTTACTTATATCGCAGACCACGAGTCTGGT
GAAAAGGCTAACTACTAATGTGGGGCAAGCTTCCGTCGATTGCTCGGCTT
GGTTTTCGGCGTTGCTTGTGTTGGTGTGAATCGTGCTGGGTTTGCAAGCG
TCACGCATACCTTCCCCGTGAAGAAAATCAAAACCGACCGCAAAACGTTC
ATCCTGAATGCCCCCCGGTTGTCGTTGTTTGTGCGTGGCGACAAACCCTC
GTACTCGACGACCCCTTCCTCTTCGCAGACGGAGATCATGGTGTACGAGG
GTGATGCACCGGCACCCAGCCCCACGACTCCCTCTCCCGTCTTCATGCCG
ACGACTCCTTCTCCCGTCCCCCCGACCTCCGGTAAGCGGCGGTGGCCAGT
AAAACCGTAGATATTCCTAACCGGCACCCAATGACGCCGCCACCGCCGCC
GTATCCACAAGCGCCTCCCTCGCTGTGGTCGCCTACATGTTCCTTTATGC
AGCAGTGTTGCATGCCTGGCCCCCTTGTGGCCGACTACGTGTCGCTTTAT
TAGCAGCAGACTTGACACGTCTGCTAGTGCCTTCGTGCTCGACTTGACAC
CCTGGCGGAGAGAGTTCTAACGCTTGTGCGGAGCGACTGACGACCGCTAT
CGGGGTGGGCGTGGTCAAACCTCCTCTCTTCTGCTTTTTTTTTTTTACGT
TCTGCAGACATTAACCCTTGCTTCGACAGCACAAATGACGACTACCGGTG
TCAACCTAGCGTCGACCAGCCCGCCTACATGTGAGTGCGATTTCGCACGC
CTGACGAAGCCTATTCTCGTTGTTGATAGCGGTCCGCGCACACGAGTGGT
TGCGGCCAGTGGCATGTTTCCATAGCCTGAACAGCAGCCATTTAGTCCAC
GGAAACTTTGCGAACCCAAGATCGTAACACTTGGCCTTCTTTGTTCTCTC
TCTCGCTCGCTGACTCTCCAGTCCAACCTTTGCTGAGCTGAACCGTGATT
TGTGTGTGTCTTCGCTGTCCCGACGTGTTTCCCACTCGGCCCACCCCGCC
AGCGACTTGAACAACTGCAACTTCGTCGACTCTGACGCCGCTGACCTTCC
TGCGTGCTTCGAGAGCTTCGGCAAGACCGACATCGAGATTCTGTAAGTGA
TTGCTTAGAAGAAGACGACCACAACCAATCCGAGCATGGTTGCAAGCGGA
GTGTCTAGACCACCCTAGACCACCGCCGTTGCCCGGTAGGACTACGGTTT
GAGGCATGTTCCCCCCATCTTAGGTGATGCATTTGTTTGTTCCGCTGGAA
ATATCAGGCACCTCACCTTCCACGACGACCTGACGACCCTGCCGGCGGGA
GTCTTCGAGGGGCTGGAAAACGTCGTTGACATGTACGATGTCTGTCATTG
TTGCTGCTGCCGACGTCGTTGTTGTTTCCGTGTTCAGCAGCCCCATCAAA
ATTATGGCAACAACAGCAGCAGTCGTAGTTGTGATTTTTATTTGTAGGGT
GCGGGGAGCCACACGGACGGTCGCAGCAGCTCTATCTCTTTCTCTTGATG
AGGTTCTTCATGTTACTTTTGTGTACACCCGGTTGGTTCTCGTCTGTGAA
CCCTGAACCGCCTCGGACTCAGTGTACCGTCGTAGCGCGTGCATTGTACC
ATAGTCTTTCCCCTTCGACGCTCAAGGGTTAGCTGATTTGGTGTATCCTT
TTTGGACGCTTCCATGGCTTTCGGTGTGGAAACAAGCGGACGGCGTTAAG
CGAAAGCTTCACCGTCCTCATGTGTTGTTTATTCCACGCCCTTCGCGTGA
AGCCTTCGTTGGGTGAACGAGGATTCTAACAGGCACCATGGACGTGAAGA
TTGATCAACATCCTCCACGCCTCCTCGGCTGGCGAACACTGTTCCATTGT
CAACAATGATAGCTTGAAGCTCAACGAACGGCGCCGCGCCGTGTTTGTCC
GCTTTGCTATGTGCTGCCATGCATTCTCCAGGGACATGTCCTACACGGGA
CTGGAGTACCTGCCTGCCGGAGTCTTCTCCGGCCTCTCGGGGCTCACGAA
GCTGTGCGTACATCTACTAAGATTCAGATTTAGTAGCACAATGGTGTCGT
TTTAGGTCAAGGCTAGGATCGAACGCCGACCCGTGACTACTTTCCATGAT
TGGAGAGGGGAGGGAAGACCAGACGCGAGAAATTTATTCTGTGTGTGCCC
AAACGTTGGCGGCGTTTCGTGCGTCTCGCTGTGATCCTTGCCACTGCTGT
GCATCCATTCTCGTCCTATTATCATAGGGGGACAGCGTTCTGCCGCCCGC
CATTGCTCGAACAGTGCATTGAGCTGTGTTGGTCGATTGAGTCTCCTCGA
CCAACAGTGGTGTTGGCAAGGCAGCTAAGAAGTATTGCAAGAATCGTTCG
TGATATCCTGAAGGTAGAACGAAATGTCTTCCTTCATTCACACATACGGG
TACCGCTACACCGCCGCCTACAATTGAGCTTGCCAGGGGCAGGATCGTTC
GTTAATGATTTTATCTTTGGATGAGAGTCGTCAAGACGAAGACGACAGCA
TACCGCTGATAGTGCAAGCAAGATGACGACCCTTCGTCGAATGTGTGTCT
CCCTTTGGCGACCTTTTCCTATCGAAATTTACGTCGAAATCGTCTTTAGG
TTTGTTTTCCGTGTGCTAAAGGTCAATGCACTCACTTGTCTTTTTTCGTG
ACATTTTGCTTTCGATGCACTCAGTTGAAGTTGTTCCCCGTGTCTGCCCT
AAAGGACAATACACTTACGCGTCTCCTTTTGATGGCCTTTTGCTTTCGAT
GCTCCTCCTGACCGTTAAGCGCTAGACTTACCAACGACGCGAAACCTGTC
ACACATGCCGCCGAGACCAGACTGACCCCGAACATTTTTTTTTTTTTTGC
CGTCTCTGTCCTGAAGGTCAATGCACTTCAGCAGCATCGAGGGCCTGCCC
GAGGACCTCTTCGCCGACACCCCGCTACTCGAGAGCCTGGAGGTGTCCTC
CGCGAAGCTGAGCACTCTGCCGGCCGGGGTGTTCGAACCGCTCACCAACC
TGCAATCCTTGTAAGCATTCCGGTGATTGGAAAGCCGGTGCTTTCCAAAG
TTGAATGAGGATTCTGTAACCTCGGGTTCCTGTCTTTTCTCATGTTTTCC
GTTGACCTCGTCCTCGCGGATCAATTCTGCGGGTCGGCACTTGTTGGTTC
TTCTGGTTTCCCATGTCGAAGCTCACCAATACTTTTTGCGATACCGCCGC
CCCTCCGCTGCCTTCTGCACGTTTCTCGGTCTGCCGTTCAACCGTAACGG
CAACGCTATCATCAACGACGACGACGCCGTCACTTCGGTTTCGCGCGCAG
GACCCTGTCTTCCCGTTTCGATGACGTGCAGTTGCAGTGCCTCCCTTTCT
CGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6467:478..7632-

>mRNA_Ecto-sp13_S_contig6467.17246.1 ID=mRNA_Ecto-sp13_S_contig6467.17246.1|Name=mRNA_Ecto-sp13_S_contig6467.17246.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6467:478..7632- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACAGGGGGGACAGCAGAACGCGCACCGTAGATGTCTCTGTCGATGG
CGCCCTGGTGACCACCTGGACGAGTTCGGGGACAACGACCGAGTTCGAGA
GCGTCGACCTATCTGGAGCGTACGGTCAAGTCGTCACCATCTCGGGCAAC
AACCAGGCTGACTCGCAATGGCTAAGCATCATCGAGACGGAGATCATGGT
GTACGAGGGTGATGCACCGGCACCCAGCCCCACGACTCCCTCTCCCGTCT
TCATGCCGACGACTCCTTCTCCCGTCCCCCCGACCTCCGACATTAACCCT
TGCTTCGACAGCACAAATGACGACTACCGGTGTCAACCTAGCGTCGACCA
GCCCGCCTACATCGACTTGAACAACTGCAACTTCGTCGACTCTGACGCCG
CTGACCTTCCTGCGTGCTTCGAGAGCTTCGGCAAGACCGACATCGAGATT
CTGCACCTCACCTTCCACGACGACCTGACGACCCTGCCGGCGGGAGTCTT
CGAGGGGCTGGAAAACGTCGTTGACATGGACATGTCCTACACGGGACTGG
AGTACCTGCCTGCCGGAGTCTTCTCCGGCCTCTCGGGGCTCACGAAGCTG
TCAATGCACTTCAGCAGCATCGAGGGCCTGCCCGAGGACCTCTTCGCCGA
CACCCCGCTACTCGAGAGCCTGGAGGTGTCCTCCGCGAAGCTGAGCACTC
TGCCGGCCGGGGTGTTCGAACCGCTCACCAACCTGCAATCCTTGACCCTG
TCTTCCCGTTTCGATGACGTGCAGTTGCAGTGCCTCCCTTTCTCGTGA
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