mRNA_Ecto-sp13_S_contig6462.17240.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: A0A6H5L1C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C6_9PHAE) HSP 1 Score: 483 bits (1244), Expect = 3.430e-166 Identity = 260/283 (91.87%), Postives = 268/283 (94.70%), Query Frame = 1
Query: 1 LQASFVLLRVSSLSRRAAAAPSSAPSLASSLAGLQCRRGDSKTVPLLCHLSRYPPLLTRASFSTKSAEDDDKTASEAKAEVEQVSDETGKDQWGNRGKLIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTPISAT 849
++AS VLL VS LSRRAAAAPSSAPSLASSLAGLQ RG+SK PLLCHLSR+PPLLTRASFSTKSA+DDDKTA+EAKA+VEQVS ET KDQWGNRGKLIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEG AQGEDG+VRKKPRNK NRYGMPKLSGRRFRVERMNI GVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKR P SAT
Sbjct: 5 IKASPVLLHVSFLSRRAAAAPSSAPSLASSLAGLQYWRGNSKMAPLLCHLSRFPPLLTRASFSTKSAKDDDKTATEAKAKVEQVSAETRKDQWGNRGKLIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGEVRKKPRNKTNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRPPNSAT 287
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: D7FID1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID1_ECTSI) HSP 1 Score: 287 bits (735), Expect = 1.660e-91 Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 1
Query: 394 MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTPISAT 849
MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEG AQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNI GVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTP SAT
Sbjct: 1 MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTPNSAT 152
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: A0A835ZAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD4_9STRA) HSP 1 Score: 143 bits (361), Expect = 1.390e-35 Identity = 82/185 (44.32%), Postives = 111/185 (60.00%), Query Frame = 1
Query: 292 KLIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTPISA 846
+L+Y G L P++ LKRVSITTC +S++ P L++ G +SVP++GQ+AV AL ST LL+ C PYV +++EI GRGA + R F+ E ++ILG R TEF + +V+P P+ RPFVSFKA +YYFIQG + DK LL+ LLGR L D EK + SA
Sbjct: 48 ELLYIGPLTAPIKTLKRVSITTCAMSMIGTPLLLVLGNDSVPLSGQIAVTGVALTAAVGSTALLHWCTRPYVHKLSEI-TGRGAIDK---------------------ARLFKAELLSILGRPRVTEFRLGDVQPQPDALRPFVSFKARDNYYFIQGEVLQDKALLKELLGRPLDDSEKSSGTSA 210
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: W7TRL5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRL5_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.130e-23 Identity = 70/179 (39.11%), Postives = 97/179 (54.19%), Query Frame = 1
Query: 295 LIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVF--RMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHE 825
LIY G+ A +R LKRVS+TTC+I + + P + G ESVP+A VA+ L+ T T+LL+ PY+F R+A E D K R P + F + ++ L R TT F++ +V+P+PN++RPFVSF A YF+ G DK LL +LLGR LK E
Sbjct: 110 LIYTGAHAGVIRTLKRVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPFVTADNDL-EISDSGDKSDRAVRRNTTPDMH---FSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSE 284
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: UPI0009E48F37 (uncharacterized protein LOC110023651 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E48F37) HSP 1 Score: 68.2 bits (165), Expect = 4.390e-9 Identity = 57/179 (31.84%), Postives = 85/179 (47.49%), Query Frame = 1
Query: 295 LIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILG--VRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHE 825
++Y G ++ ++ +K +S++TC +S P + + V + AV S +V + S+T L+ VSPYV ++ R G D F VE M L V RT +FS V P P T+RPFVSF+A G++YF+ G +K LL L RE + HE
Sbjct: 99 VVYYGPISSTIKKVKLLSLSTCCLSASLGPVITFMTSPDMNVIVKGAVASTVIVLSASTTAALHWFVSPYVHKL------RWRPGSDS----------------------FEVEMMTWLATYVPRTIKFS--SVRP-PETNRPFVSFRADGNFYFVDGEHCHNKALLARLTPRE-RAHE 245
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: A0A7D9I2F3_PARCT (Transmembrane 70, mitochondrial-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I2F3_PARCT) HSP 1 Score: 66.6 bits (161), Expect = 8.520e-9 Identity = 47/170 (27.65%), Postives = 83/170 (48.82%), Query Frame = 1
Query: 283 NRGKLIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQ 792
N +L+YEG L+ ++ +K S++T L +++A P L++YGKESVP+ G+VA+ + L+ S+T LL+ YV +M Y ++ F VE M++L R+ T ++E+ + F +F+ G YF+ + + +LQ
Sbjct: 69 NDRQLVYEGPLSRSIQLVKVFSLSTALATVVATPILMLYGKESVPLVGKVAIATTILLAGTSTTFLLHWITKVYVHKM--FYN--------------------------VATETFIVETMSMLARRKETALKLNEIR-LAKEPTAFTTFQGNGKKYFLHTDLLEAQQVLQ 209
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: A0A2D4BZQ4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZQ4_PYTIN) HSP 1 Score: 65.9 bits (159), Expect = 1.800e-8 Identity = 43/177 (24.29%), Postives = 80/177 (45.20%), Query Frame = 1
Query: 292 KLIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDH 822
+L+Y+ +A VR +K VS+T+C ++++ +PAL + ++S + G+ A+ ++ +T L ++ PYV RM S R E + + TT+F++ +V P + P +SF+A YFI + D L++ +G + K H
Sbjct: 63 ELVYQAPMARAVRLMKGVSVTSCALTLVGMPALCVLSEQSASIIGKWAMCGTIMLFGLGTTSLYHVLFKPYVMRM----------------------------WIDRSENRVTAETVTLFARLTTTDFALGDVTRPPKSMHPMISFRAGEXDYFIHPECLQDDDLVKVFMGEDFKVH 211
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: A0A7S1DCX6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DCX6_CYCTE) HSP 1 Score: 65.1 bits (157), Expect = 2.850e-8 Identity = 52/187 (27.81%), Postives = 93/187 (49.73%), Query Frame = 1
Query: 286 RGKLIYEGSLAHPVRGLKRVSITTCLISILAVPALV-MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERM--NILGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTP 837
+ +L+YEG LA LK VS++T ++S +A+P L+ +Y E GQ A A ++G+ ST+ ++ C SPY+ R+ I VRK ++ + + +++ ++ + NIL +R T F + + +RPF +F A G F+ + D L + L+G + K+ + P
Sbjct: 34 KSELLYEGPLARLTTRLKVVSVSTAVLSTVAMPVLLYIYNGEL----GQYAAAGAGILGSTCSTVAMDFCFSPYIHRLERI-----------PVRKCHSKEETPEEAAEKAAQKYLIKAVTRNILAMRVETVFDPETDVEKYSGNRPFCNFTAKGVPLFLHPDMLRDIQLRKLLIGEQPKEDPELQP 205
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: A0A7I8KK78_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KK78_SPIIN) HSP 1 Score: 65.1 bits (157), Expect = 4.850e-8 Identity = 51/170 (30.00%), Postives = 79/170 (46.47%), Query Frame = 1
Query: 295 LIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILG--VRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTL 798
L+Y G ++ ++ +K +S++TC +S+ P + + V + AV S + + S+T L+ VSPYV ++ R G D F VE ++ L + RT F+ +V P P T RPFV+FKA G +YF+ G DK LL L
Sbjct: 100 LVYRGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPEMNVILKGAVASTVIFLSASTTAALHWFVSPYVHKL------RWRPGADS----------------------FDVEMLSWLATPLPRTVRFA--DVRP-PQTQRPFVTFKAGGDFYFVDGEHFRDKALLARL 238
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Match: A0A368SBZ7_SETIT (Uncharacterized protein n=7 Tax=Paniceae TaxID=147428 RepID=A0A368SBZ7_SETIT) HSP 1 Score: 64.7 bits (156), Expect = 7.400e-8 Identity = 48/175 (27.43%), Postives = 86/175 (49.14%), Query Frame = 1
Query: 295 LIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNILG--VRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGREL 813
L+Y G ++ ++ +K +S++TC +S+ P + + V + AV S + + ++T L+ VSPY+ ++ R G D F E M+ L ++RT +F+ ++ P P T+RPFV+FKA G++YF+ G ++K LL L ++L
Sbjct: 110 LVYHGPISSIIKKVKLLSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSATTTAALHWFVSPYIHKL------RWRPGSDS----------------------FEAEVMSWLATPLKRTIKFA--DIRP-PETNRPFVTFKAEGNFYFVDGEHFSNKALLARLTPQKL 253 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6462.17240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6462.17240.1 >prot_Ecto-sp13_S_contig6462.17240.1 ID=prot_Ecto-sp13_S_contig6462.17240.1|Name=mRNA_Ecto-sp13_S_contig6462.17240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGRGAback to top mRNA from alignment at Ecto-sp13_S_contig6462:598..3830+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6462.17240.1 ID=mRNA_Ecto-sp13_S_contig6462.17240.1|Name=mRNA_Ecto-sp13_S_contig6462.17240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6462:598..3830+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6462:598..3830+ >mRNA_Ecto-sp13_S_contig6462.17240.1 ID=mRNA_Ecto-sp13_S_contig6462.17240.1|Name=mRNA_Ecto-sp13_S_contig6462.17240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6462:598..3830+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |