mRNA_Ecto-sp13_S_contig64597.17235.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64597.17235.1
Unique NamemRNA_Ecto-sp13_S_contig64597.17235.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: D7G930_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G930_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.300e-35
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEELR 216
            +FGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYT++EE+EKEE     AQRLDAFGDWLEEQELPEELR
Sbjct:  564 KFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTIKEEDEKEE-----AQRLDAFGDWLEEQELPEELR 630          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A835ZDG4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.410e-22
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEELR 216
            +FGTA+A+ +C+K  DGR+FG RKL CH+WDG+TNY V+E+  KE+      +RLD FGDWLE Q+LPEE++
Sbjct:  550 KFGTAFASEQCIKKMDGRWFGKRKLRCHYWDGITNYEVKEDASKEQ------ERLDEFGDWLENQDLPEEMQ 615          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A7S2B9P2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B9P2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-14
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEELR 216
            +F T +AA EC+    GRFFGG+KL  ++WDG TN+  ++    +     + +R+  FGDW+++QELPEEL+
Sbjct:  455 KFKTVFAAEECITQMAGRFFGGQKLKAYYWDGSTNFAERDAETAKAEEAEEEKRISNFGDWIDDQELPEELQ 526          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A7S3L1N1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1N1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.070e-14
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEELR 216
            +F    AASE VK++DGR F GR++   FWDGVT+YTV+ E  KEE    K  R + FG WLE Q+LPEELR
Sbjct:  493 KFTQPTAASEAVKLWDGREFDGRRVQATFWDGVTDYTVRNEA-KEEAEMEK--RHEEFGQWLESQDLPEELR 561          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A1Z5K1W8_FISSO (HIV Tat-specific factor 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1W8_FISSO)

HSP 1 Score: 74.7 bits (182), Expect = 5.220e-14
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEELR 216
            +F    AAS  VK +DG+ + GR++   +WDGVT++TV++E EKE+V     QRL+ FG+WL+EQELPEEL+
Sbjct:  430 KFTQPSAASAVVKDWDGKLWNGRRVEAMYWDGVTDFTVRDE-EKEQVE--TEQRLEEFGNWLDEQELPEELQ 498          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A7S2EWY2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWY2_TRICV)

HSP 1 Score: 70.1 bits (170), Expect = 1.280e-13
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEELR 216
            +F    AAS  V+ + G    GR++   +WDGVT+YTV+EE EKE+    K  R D FG WL+EQELPEELR
Sbjct:   67 KFAQPTAASAAVEAYHGSVQKGRRIDASYWDGVTDYTVKEE-EKEQREETK--RHDHFGKWLDEQELPEELR 135          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A1Z5J637_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J637_FISSO)

HSP 1 Score: 73.6 bits (179), Expect = 1.320e-13
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   19 AASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEELR 216
            AAS  VK +DG+ + GR++   +WDGVT+YTV++E EKE+V     QRL+ FG+WL+EQ+LPEEL+
Sbjct:  404 AASAVVKDWDGKVWKGRRVEAMYWDGVTDYTVRDE-EKEQVE--TEQRLEEFGNWLDEQDLPEELK 466          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A482R9X8_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R9X8_9EURY)

HSP 1 Score: 67.0 bits (162), Expect = 9.480e-13
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQE 198
            ++ +A AA+E + VF+GR+FGGR L+C +WDGVTN+  Q  NE    R  + +RLD FG WLE+++
Sbjct:   46 KYRSAGAAAEALAVFNGRYFGGRGLTCEYWDGVTNFK-QPSNES---RADEQKRLDDFGAWLEQRD 107          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: J9I3N5_9SPIT (RNA-binding proteins (RRM domain) n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I3N5_9SPIT)

HSP 1 Score: 70.9 bits (172), Expect = 1.200e-12
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYCKAQRLDAFGDWLEEQELPEEL 213
            +F +A  A EC+K  +GRFF  R++ C+FWDG T++ V  E +++       +R+D FG WLE+Q+LPEE+
Sbjct:  478 RFFSAVNAEECIKAMNGRFFDMRQIKCYFWDGKTDFRVIRETQED-----FGKRVDEFGAWLEQQDLPEEV 543          
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Match: A0A7S3HM95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM95_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-12
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTV-------QEENEKEE 138
            +FGT+YAA EC+++ +GRFF G KL  +FWDGV NY+V       QEE EK+E
Sbjct:   65 KFGTSYAAQECIRLMNGRFFAGNKLKSYFWDGVANYSVTGQSEAAQEEAEKQE 117          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64597.17235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G930_ECTSI5.300e-3587.50RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZDG4_9STRA5.410e-2256.94RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2B9P2_9STRA1.100e-1443.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3L1N1_9STRA2.070e-1455.56Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1Z5K1W8_FISSO5.220e-1451.39HIV Tat-specific factor 1 n=1 Tax=Fistulifera sola... [more]
A0A7S2EWY2_TRICV1.280e-1351.39Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1Z5J637_FISSO1.320e-1354.55Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A482R9X8_9EURY9.480e-1348.48Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
J9I3N5_9SPIT1.200e-1243.66RNA-binding proteins (RRM domain) n=1 Tax=Oxytrich... [more]
A0A7S3HM95_9STRA1.750e-1254.72Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64597contigEcto-sp13_S_contig64597:6..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score134.4
Seed ortholog evalue2.1e-29
Seed eggNOG ortholog2880.D7G930
Model size216
KEGG koko:K13093,ko:K13098
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1548@1,KOG1548@2759
Cds size216
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.8476858-CDS-Ecto-sp13_S_contig64597:5..681681463891.8476858-CDS-Ecto-sp13_S_contig64597:5..68Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64597 6..68 -
1681463891.8598228-CDS-Ecto-sp13_S_contig64597:603..7561681463891.8598228-CDS-Ecto-sp13_S_contig64597:603..756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64597 604..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64597.17235.1prot_Ecto-sp13_S_contig64597.17235.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64597 6..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64597.17235.1

>prot_Ecto-sp13_S_contig64597.17235.1 ID=prot_Ecto-sp13_S_contig64597.17235.1|Name=mRNA_Ecto-sp13_S_contig64597.17235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
QFGTAYAASECVKVFDGRFFGGRKLSCHFWDGVTNYTVQEENEKEEVRYC
KAQRLDAFGDWLEEQELPEELR
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mRNA from alignment at Ecto-sp13_S_contig64597:6..756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64597.17235.1 ID=mRNA_Ecto-sp13_S_contig64597.17235.1|Name=mRNA_Ecto-sp13_S_contig64597.17235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64597:6..756- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCGGGACAGCGTACGCGGCTTCCGAGTGCGTGAAGGTCTTCGACGG GCGATTTTTCGGCGGCCGCAAGCTGTCGTGCCACTTCTGGGATGGAGTGA CGAACTACACGGTCCAGGAAGAGAACGAGAAAGAAGAGGTGCGGTATTGT AAAGTTAAGGCGGGCTGTTTTTGGTAGCAGCTTCTTAACGCCGCTAGGGC CCTCCTCGTTGGGATGTTTTTTCTTGTGTTATGGTCTTATCCCACCTATT CTGGCGCCAGTCCACGATGTTTAAGAAAGCTACCTCCTCTATCAACTGTA CGAGGGGGTGCAGCGTTGGTGAAAGATACTATGAAATGACAAAACGATGT GCTGTGCCCCGGACAGAGTGTTGGCAGGTTTCGCTGATAGCAAACAGAAT CAAGGCGCTGGCCGCCCCTCCTGAACTCTTTCGGCCAAACAGCGATATTG CTGCTTTAGTACTGCGTGCTGAAGATCTACAACACTCCGCTGATCTCGTC TAGCCGCACACGCCACCGTTCGCAACGCCCTGAGCCCTCTTTCTTTACCG AAAAAAGAGTTTACGTGCTGCTCTCACGTCGTTCAGCTTTCTCAAGACTC GTGCGCCATTAGAGCTATGTGTGCCCCCCGCCTTCCTCTACAAACAACCT TTGCCATCTCTGATTCCGATTGGCTGGACGCGTTTCAGGCCCAACGATTG GACGCTTTCGGTGATTGGCTGGAGGAACAAGAGCTTCCGGAGGAGCTGCG G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64597:6..756-

>mRNA_Ecto-sp13_S_contig64597.17235.1 ID=mRNA_Ecto-sp13_S_contig64597.17235.1|Name=mRNA_Ecto-sp13_S_contig64597.17235.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64597:6..756- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCGGGACAGCGTACGCGGCTTCCGAGTGCGTGAAGGTCTTCGACGG
GCGATTTTTCGGCGGCCGCAAGCTGTCGTGCCACTTCTGGGATGGAGTGA
CGAACTACACGGTCCAGGAAGAGAACGAGAAAGAAGAGGTGCGGTATTGT
AAAGCCCAACGATTGGACGCTTTCGGTGATTGGCTGGAGGAACAAGAGCT
TCCGGAGGAGCTGCGG
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