mRNA_Ecto-sp13_S_contig6459.17232.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6459.17232.1
Unique NamemRNA_Ecto-sp13_S_contig6459.17232.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A6H5JUD9_9PHAE (Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUD9_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 9.090e-81
Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 1
Query:   10 DYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            DYHILVKGNNDMLSITQPHIIKEIH KYLDSGSDIIGTNTFS+TTIAMADYEMEKDVYELNFESARLAR+ACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG
Sbjct:   86 DYHILVKGNNDMLSITQPHIIKEIHTKYLDSGSDIIGTNTFSATTIAMADYEMEKDVYELNFESARLARKACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 216          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: D7FUT0_ECTSI (Methionine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT0_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 2.080e-79
Identity = 130/134 (97.01%), Postives = 132/134 (98.51%), Query Frame = 1
Query:    1 MLQDYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            MLQDYHILVKGNNDMLSITQPHIIKEIH KY+DSGSDII TNTFS+TTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG
Sbjct:    1 MLQDYHILVKGNNDMLSITQPHIIKEIHTKYVDSGSDIIATNTFSATTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 134          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A7S3PSC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSC6_9STRA)

HSP 1 Score: 197 bits (500), Expect = 5.570e-62
Identity = 95/132 (71.97%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    7 QDYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            +D+   VKGNND+L++TQP +IK IH +YL+SGS +IGTNTFSSTTIA ADYEME   YELN+  A+LAREAC+E TAKDPTKPRFV+GA+GPTNRTGSISPDVEDPS RNVTFDELV +Y ++  GL+DGG
Sbjct:   11 KDWTTNVKGNNDLLTLTQPEVIKGIHVQYLESGSRLIGTNTFSSTTIAQADYEMESLAYELNYYGAKLAREACDEMTAKDPTKPRFVVGAIGPTNRTGSISPDVEDPSVRNVTFDELVESYFEEIVGLMDGG 142          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A7X8NA10_9FLAO (5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Lutibacter sp. B1 TaxID=2725996 RepID=A0A7X8NA10_9FLAO)

HSP 1 Score: 201 bits (511), Expect = 1.020e-61
Identity = 97/132 (73.48%), Postives = 114/132 (86.36%), Query Frame = 1
Query:    7 QDYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            +++HI VKGNNDMLSITQP IIKEIH KYL++G+DII TNTFSSTTIAMADYEMEK VYELNF+SA++A+E  +E TAK+P KPRFV G++GPTNRT S+SPDV DP FR VTFDEL +AYK Q + LIDGG
Sbjct:   39 KNFHISVKGNNDMLSITQPQIIKEIHKKYLEAGADIIETNTFSSTTIAMADYEMEKYVYELNFQSAKIAKEVAQEFTAKNPLKPRFVAGSIGPTNRTASMSPDVNDPGFRAVTFDELRIAYKQQIEALIDGG 170          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A7S2R8Z7_9STRA (Methionine synthase (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R8Z7_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.630e-61
Identity = 97/132 (73.48%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    7 QDYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            QD+ + VKGNND+L++TQPH+IK IH KYL++GS +IGTNTFSSTTIA ADY+ME   YELN+  A+LAREAC+E TAKDPTKPRFV+GALGPTNRTGSISPDVEDPS RNVTFDELV +Y ++  GL+DGG
Sbjct:  301 QDWDVNVKGNNDLLTLTQPHVIKGIHTKYLEAGSQLIGTNTFSSTTIAQADYKMESLAYELNYYGAKLAREACDEMTAKDPTKPRFVVGALGPTNRTGSISPDVEDPSVRNVTFDELVESYFEEVVGLMDGG 432          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A7S2LA87_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LA87_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.060e-61
Identity = 100/131 (76.34%), Postives = 110/131 (83.97%), Query Frame = 1
Query:   10 DYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            D+   VKGNNDMLSITQPH+I  I+  YL+SGSD+IGTNTFSSTTIAMADYEME   YELN+E ARLAREAC+E TAKDPT PRFV GA+GPTNRTGSISP VEDPS RNVTFDELV  Y +Q  GL+DGG
Sbjct:  141 DWKCNVKGNNDMLSITQPHVIAGIYKGYLESGSDLIGTNTFSSTTIAMADYEMEDYAYELNYEGARLAREACDEMTAKDPTNPRFVCGAVGPTNRTGSISPSVEDPSARNVTFDELVDTYFEQVVGLMDGG 271          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A1H2TLM9_9FLAO (5-methyltetrahydrofolate--homocysteine methyltransferase n=1 Tax=Lutibacter oricola TaxID=762486 RepID=A0A1H2TLM9_9FLAO)

HSP 1 Score: 199 bits (507), Expect = 3.380e-61
Identity = 96/132 (72.73%), Postives = 113/132 (85.61%), Query Frame = 1
Query:    7 QDYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            +D+ + VKGNNDMLSITQP  IK IHGKYL++G+DII TNTFSSTTIAMADYEME+ VYELN+ESA++A+E  EE TAK+PTKPRFV G++GPTNRT S+SPDV DP FR VTFD+L VAYK Q + LIDGG
Sbjct:   39 KDFKVSVKGNNDMLSITQPEAIKTIHGKYLEAGADIIETNTFSSTTIAMADYEMEEYVYELNYESAKIAKEVAEEFTAKNPTKPRFVAGSIGPTNRTASMSPDVNDPGFRAVTFDDLRVAYKQQAEALIDGG 170          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A7S0B190_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B190_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.410e-61
Identity = 98/133 (73.68%), Postives = 113/133 (84.96%), Query Frame = 1
Query:    7 QDYHILVKGNNDMLSITQPHIIKEIHGKYLDSG-SDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            +D+   VKGNNDMLSITQPH+I+ I+ +YL+ G S++IGTNTFSSTTIAMADYEME   YELN+E ARLARE C+E TAKDPTKPRFV+GA+GPTNRTGSISP VEDPS RNVTFDELV  Y +Q  GL+DGG
Sbjct:  132 KDWSCNVKGNNDMLSITQPHVIQGIYRQYLEEGGSNLIGTNTFSSTTIAMADYEMEDYAYELNYEGARLAREVCDEVTAKDPTKPRFVVGAIGPTNRTGSISPSVEDPSARNVTFDELVETYFEQIVGLMDGG 264          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: UPI001CD4CDF0 (homocysteine S-methyltransferase family protein n=1 Tax=Lutimonas saemankumensis TaxID=483016 RepID=UPI001CD4CDF0)

HSP 1 Score: 197 bits (502), Expect = 2.200e-60
Identity = 96/132 (72.73%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    7 QDYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            +D+ IL+KGNND+LS+TQP  IKEIH KYL++G+DII TNTFS TTIAMADY ME  VYELNFESARLA+EA +E TAKDP+KPRFV G++GPTNRT S+SPDV DP FR VTFDEL VAYK Q + L+DGG
Sbjct:   40 KDFEILLKGNNDLLSLTQPEAIKEIHRKYLEAGADIIETNTFSGTTIAMADYSMEDLVYELNFESARLAKEAAQEYTAKDPSKPRFVAGSMGPTNRTASMSPDVNDPGFRAVTFDELRVAYKQQGEALLDGG 171          
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Match: A0A7S2XWE9_9STRA (Methionine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.390e-59
Identity = 103/133 (77.44%), Postives = 116/133 (87.22%), Query Frame = 1
Query:    7 QDYHILVKGNNDMLSITQPHIIKEIHGKYLDSG-SDIIGTNTFSSTTIAMADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTGSISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG 402
            +DYH LVKGNNDMLSITQP IIKEIH KYL+ G S +IGTNTFSSTTIAMADY+ME  V ELN ES RLAREAC+E TAKDPT+PRFV+GA+GPTNRTGSISP+VEDPS RNVTFDEL +AY +Q  GL++GG
Sbjct:   65 KDYHTLVKGNNDMLSITQPQIIKEIHLKYLEEGNSQLIGTNTFSSTTIAMADYDMESYVRELNVESVRLAREACDEVTAKDPTRPRFVVGAIGPTNRTGSISPNVEDPSVRNVTFDELEIAYYEQVCGLVEGG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6459.17232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUD9_9PHAE9.090e-8197.71Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D7FUT0_ECTSI2.080e-7997.01Methionine synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S3PSC6_9STRA5.570e-6271.97Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7X8NA10_9FLAO1.020e-6173.485-methyltetrahydrofolate--homocysteine methyltrans... [more]
A0A7S2R8Z7_9STRA2.630e-6173.48Methionine synthase (Fragment) n=1 Tax=labyrinthul... [more]
A0A7S2LA87_9STRA3.060e-6176.34Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1H2TLM9_9FLAO3.380e-6172.735-methyltetrahydrofolate--homocysteine methyltrans... [more]
A0A7S0B190_9STRA3.410e-6173.68Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
UPI001CD4CDF02.200e-6072.73homocysteine S-methyltransferase family protein n=... [more]
A0A7S2XWE9_9STRA1.390e-5977.44Methionine synthase n=1 Tax=Fibrocapsa japonica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6459contigEcto-sp13_S_contig6459:1..1313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score263.8
Seed ortholog evalue4.2e-68
Seed eggNOG ortholog2880.D7FUT0
Preferred namemetH
Model size402
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00548
KEGG ReactionR00946,R09365
KEGG Pathwayko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230
KEGG ModuleM00017
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.betaine-homocysteine S-methyltransferase activity
EggNOG OGsCOG0646@1,KOG1579@2759
EC2.1.1.13
Cds size402
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.7033534-CDS-Ecto-sp13_S_contig6459:0..901681463891.7033534-CDS-Ecto-sp13_S_contig6459:0..90Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6459 1..90 -
1681463891.7213533-CDS-Ecto-sp13_S_contig6459:542..7171681463891.7213533-CDS-Ecto-sp13_S_contig6459:542..717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6459 543..717 -
1681463891.731147-CDS-Ecto-sp13_S_contig6459:1176..13131681463891.731147-CDS-Ecto-sp13_S_contig6459:1176..1313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6459 1177..1313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6459.17232.1prot_Ecto-sp13_S_contig6459.17232.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6459 1..1313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6459.17232.1

>prot_Ecto-sp13_S_contig6459.17232.1 ID=prot_Ecto-sp13_S_contig6459.17232.1|Name=mRNA_Ecto-sp13_S_contig6459.17232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MLQDYHILVKGNNDMLSITQPHIIKEIHGKYLDSGSDIIGTNTFSSTTIA
MADYEMEKDVYELNFESARLAREACEEATAKDPTKPRFVMGALGPTNRTG
SISPDVEDPSFRNVTFDELVVAYKDQTKGLIDGG
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mRNA from alignment at Ecto-sp13_S_contig6459:1..1313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6459.17232.1 ID=mRNA_Ecto-sp13_S_contig6459.17232.1|Name=mRNA_Ecto-sp13_S_contig6459.17232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1313bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6459:1..1313- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCAGGACTACCACATCCTCGTCAAGGGGAACAACGACATGCTGTC CATCACCCAGCCGCACATCATCAAGGAGATCCACGGCAAATACCTAGACT CGGGCTCCGACATCATCGGCACCAACACCTTCTCATCGTGAGTGTGTGTG TGCCTGCGATGCGAACGAAACCGATGGTGTTCAGTGGGATGCCTCGCGTA ATATTTTTGGGAGAGCTTGTCTTTAAAGCCAGTTCTCGAGGAGGAAGCAT TGAAAGTTGTAATCTATTGTAGACTCCTTGTCTATAAGATCGAGATGGGT TCGTCGGGTCGTTTAAGAAAAAAAATTTGGGTAAAAATTGTAGTGCTCCT CCACGACTACCTTTGCTCTTGTGCGCTACAGTGGTGTTGCTCAAGGATCC CTGTAGATGGAAACTGAATTATTTCTCCACAAGGCCCTACTACAAACCCA ATAAACTATATTTCATATGAAAGCTGTGAACGAGAGCTTTCATATGCACC TACTCTCCTGTGCCATGTATTCATACCACTATACCGCCACACCATTTCCT GAAACAAAAGTATCCCCCTGTTGCATACACACTTTTGATGGCACAGGACC ACGATCGCTATGGCCGACTACGAGATGGAGAAGGACGTTTACGAGCTCAA CTTCGAGAGCGCCCGCCTGGCGAGGGAGGCCTGCGAAGAGGCCACAGCCA AGGATCCCACCAAGCCGCGCTTCGTGATGGGAGCCCTCGGTCCCACGAAC CGGACGGGATCCATCTCTCCGGTGAGACTTGTTTTTTTTGTAGGAAGCTT ACGAGCGCGCGCACAAGCTTTTTGAGTCCATCACCCACCCAGGCGGTGAA ACCAACGGAGTAGTTTAGAGGGCAGTGCTTTGGTGGGAGCGCCACCGAGT GCTGCTTGCCGGGAGGGATTTGTTCGTTTATCGCGTGGAGTTACCAAAAC CTTTGCCGGAAACGGGGTTGGACAGAAAAGGTTCGGGTTGGACAGGTCGT CCCTTCGAGGATTGCTCTTAAAGTCACACGTATGTAGTTCTGCTTCTCTT GGGGTATCTGCTCATGGGAGAGCTTTTTTACTCAAAGCGCGACCGGTGTC CAGTCCATTGGTGTAAATCTGTCGACCAGTCAATCGACCAATCGGATGGT TTCATTCGATTGACAGGGTAGACTCTCGACCAATCCATTCACTCTACAAC GCAAACCTCCGCAACCCGCGCAGGATGTGGAAGACCCTTCGTTCCGAAAC GTAACGTTCGACGAGCTGGTGGTGGCCTACAAGGACCAGACCAAGGGCTT GATCGACGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6459:1..1313-

>mRNA_Ecto-sp13_S_contig6459.17232.1 ID=mRNA_Ecto-sp13_S_contig6459.17232.1|Name=mRNA_Ecto-sp13_S_contig6459.17232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6459:1..1313- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCAGGACTACCACATCCTCGTCAAGGGGAACAACGACATGCTGTC
CATCACCCAGCCGCACATCATCAAGGAGATCCACGGCAAATACCTAGACT
CGGGCTCCGACATCATCGGCACCAACACCTTCTCATCGACCACGATCGCT
ATGGCCGACTACGAGATGGAGAAGGACGTTTACGAGCTCAACTTCGAGAG
CGCCCGCCTGGCGAGGGAGGCCTGCGAAGAGGCCACAGCCAAGGATCCCA
CCAAGCCGCGCTTCGTGATGGGAGCCCTCGGTCCCACGAACCGGACGGGA
TCCATCTCTCCGGATGTGGAAGACCCTTCGTTCCGAAACGTAACGTTCGA
CGAGCTGGTGGTGGCCTACAAGGACCAGACCAAGGGCTTGATCGACGGCG
GG
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