mRNA_Ecto-sp13_S_contig6456.17229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6456.17229.1
Unique NamemRNA_Ecto-sp13_S_contig6456.17229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6456.17229.1 vs. uniprot
Match: A0A6H5L270_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L270_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.280e-21
Identity = 56/94 (59.57%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:  109 LWPARPRF-HMTSLDTGDQRQQRAKANSDQTDGVPFVTKATSYYL*MLG-LGARQPLRLNPPH-LCCYQRQDELLHGARGQERATCRQQCLLRR 381
            L PA P    + SLDTG+QR Q AK NSDQ   VPFVTKA+SY +     LG      LNPPH     +RQDELLHGARG+ERAT RQQ LLRR
Sbjct:    4 LSPASPSCDELASLDTGNQRPQHAKTNSDQAGIVPFVTKASSYTICRCSDLGHSNRRELNPPHDTAALERQDELLHGARGEERATFRQQLLLRR 97
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BLAST of mRNA_Ecto-sp13_S_contig6456.17229.1 vs. uniprot
Match: A0A6H5LQT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQT7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.810e-16
Identity = 61/133 (45.86%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:   37 EEGSVQEKKKKLNPITLKLRCCTWLWPARPRF-HMTSLDTGDQRQQRAKANSDQTDGVPFVTKATSYYL*ML---GLGARQPLRLNPPH-LCCYQRQDELLHGARGQERATCRQQCLLRRWCQSQTIHHRNAL 420
            EEG VQ  +    P  +   C     PA P    + SL TGDQ  Q AKANSDQ   +PFVTKA+SY +      G G R+   L PPH     +RQDEL HGARG+ERA  RQQ LLR     Q + H   L
Sbjct:    2 EEG-VQGVRTSEPPAEI---CMALFGPASPSCDELASLSTGDQWPQHAKANSDQAGVIPFVTKASSYSICRCSESGHGNRR--ELYPPHDTAAVERQDELRHGARGEERAIFRQQLLLR---HQQLVLHTQQL 125
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BLAST of mRNA_Ecto-sp13_S_contig6456.17229.1 vs. uniprot
Match: D7FH35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH35_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.550e-12
Identity = 37/57 (64.91%), Postives = 39/57 (68.42%), Query Frame = 2 
Query:  281 TRRTCAATSGKTSFYTARADKRERHAGSSVCLD-DGAKVKRYIIGTLWTGQFQRHHF 448
            TRRTCAA SGKTSFYTARADKRERHAGSS CL  DG +  RY      +   Q  HF
Sbjct:   13 TRRTCAAKSGKTSFYTARADKRERHAGSSFCLGGDGHERARYRHVLKGSRAIQARHF 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6456.17229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L270_9PHAE5.280e-2159.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LQT7_9PHAE3.810e-1645.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH35_ECTSI1.550e-1264.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6456contigEcto-sp13_S_contig6456:7178..8234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size455
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_004420.1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.5504034-CDS-Ecto-sp13_S_contig6456:7177..72531681463891.5504034-CDS-Ecto-sp13_S_contig6456:7177..7253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6456 7178..7253 -
1681463891.560211-CDS-Ecto-sp13_S_contig6456:7857..79911681463891.560211-CDS-Ecto-sp13_S_contig6456:7857..7991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6456 7858..7991 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.5694532-UTR-Ecto-sp13_S_contig6456:7991..82341681463891.5694532-UTR-Ecto-sp13_S_contig6456:7991..8234Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6456 7992..8234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6456.17229.1prot_Ecto-sp13_S_contig6456.17229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6456 7178..7991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6456.17229.1

>prot_Ecto-sp13_S_contig6456.17229.1 ID=prot_Ecto-sp13_S_contig6456.17229.1|Name=mRNA_Ecto-sp13_S_contig6456.17229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MLGLGARQPLRLNPPHLCCYQRQDELLHGARGQERATCRQQCLLRRWCQS
QTIHHRNALDWTVPTPPFPA
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mRNA from alignment at Ecto-sp13_S_contig6456:7178..8234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6456.17229.1 ID=mRNA_Ecto-sp13_S_contig6456.17229.1|Name=mRNA_Ecto-sp13_S_contig6456.17229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6456:7178..8234- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTTCGACGCCACCCGGCTGGTGACCATCCCGTGGTGAAGAAGGAAGTGT
CCAGGAAAAAAAAAAAAAACTAAACCCAATAACACTGAAGTTACGTTGTT
GCACATGGTTGTGGCCTGCGCGCCCTCGTTTCCACATGACGAGCCTGGAC
ACAGGCGACCAGAGGCAGCAGCGTGCCAAGGCGAATAGCGATCAGACCGA
TGGCGTTCCTTTCGTAACCAAGGCAACCAGCTACTATCTCTAGATGCTCG
GACTTGGGGCACGGCAACCGCTGCGGTTAAACCCGCCGCACTTGTGCTGC
TACCAGCGGCAAGACGAGCTTCTACACGGCGCGCGCGGACAAGAGAGAGC
GACATGCCGGCAGCAGTGTCTGCTTAGGTAAGCTATTCCCCTGCAGTTTT
ATCTGGATGGTAGCAAAAGAAGGATGAATTAAGGGAAAGTTGTGTGTTGT
GTATCCCTGTATCCCCTTCGGGAGAGGCGCGATCTCAGCATTTTAGTCTT
TTGTTGTCACATTTGCTCAGACACCAGCAGTTGGTCCTGCACAACCAACG
CCTCTGGGCCTACTGCGCGCATGCAGCTCTTACTCATCATGTACCACGGG
GGATTATCCCGAAGGCGTCAATCAGTGCCAAGCCTCATTAGACATTGTTA
AGGGCGGGGGATGTACATGAACTGCTGTGGGCACTTCGTTATTTCTCAAC
GAATTGTTGCGGGGGTTGTGCTTGTTATTCATTCAACGGATTTTGTGACA
ACGCGCATGTCGGCTGTGTCTGACGTGTCCAAAAACACGCCTAGCATAGA
CAGCGTCAACCGTCCAGAGGCGTCAGCCGACGCCCAGCCCTTATCACGCC
CTTTTTTTTTAAAAAAAATTGCTCGATTGACACGGAGTCGTTCACACGTC
GCAGAAGTTACTACCGTAGGTTGCACAAGATACCACACCCCCCTTAACCG
AATTTCACACCTCCATTGTTCCACGACAAAGACGATGGTGCCAAAGTCAA
ACGATACATCATCGGAACGCTCTGGACTGGACAGTTCCAACGCCACCATT
TCCGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6456:7178..8234-

>mRNA_Ecto-sp13_S_contig6456.17229.1 ID=mRNA_Ecto-sp13_S_contig6456.17229.1|Name=mRNA_Ecto-sp13_S_contig6456.17229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6456:7178..8234- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGGACTTGGGGCACGGCAACCGCTGCGGTTAAACCCGCCGCACTT
GTGCTGCTACCAGCGGCAAGACGAGCTTCTACACGGCGCGCGCGGACAAG
AGAGAGCGACATGCCGGCAGCAGTGTCTGCTTAGACGATGGTGCCAAAGT
CAAACGATACATCATCGGAACGCTCTGGACTGGACAGTTCCAACGCCACC
ATTTCCGGCA
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