mRNA_Ecto-sp13_S_contig64544.17228.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64544.17228.1
Unique NamemRNA_Ecto-sp13_S_contig64544.17228.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64544.17228.1 vs. uniprot
Match: A0A6H5KV72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV72_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 4.410e-49
Identity = 101/123 (82.11%), Postives = 105/123 (85.37%), Query Frame = 1 
Query:    1 AVGEEEPEAVAGAGGASRPRAGEAAIARVRSHLGPIIPALSAEELDALVSKLAHWCKEGVVAAVPPSDPAPGRPSETAA-----DAGCESSSCILPRLPSSPAAAEALEVLVQALCELSGRSP 354
            AVGEEEPE V GAG A+RPRAGEAAIARVRSHLGPI+PALSAEELDALVSKLA WCKEGV+A+VPPSDPA GR SETAA     DA CESSSCI P   S PAAAEA EVLVQALCELSGRSP
Sbjct: 1101 AVGEEEPEPVVGAGRAARPRAGEAAIARVRSHLGPIVPALSAEELDALVSKLAQWCKEGVLASVPPSDPAAGRRSETAAAATAADADCESSSCIFPPXXSGPAAAEAFEVLVQALCELSGRSP 1223
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BLAST of mRNA_Ecto-sp13_S_contig64544.17228.1 vs. uniprot
Match: D8LR69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR69_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.480e-46
Identity = 100/123 (81.30%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:    1 AVGEEEPEAVAGAGGASRPRAGEAAIARVRSHLGPIIPALSAEELDALVSKLAHWCKEGVVAAVPPSDPAPGRPSET-----AADAGCESSSCILPRLPSSPAAAEALEVLVQALCELSGRSP 354
            AVGEEEPEA    GGA+RPRAGEAAIARVRSHLGPI+PALSAEELDALVSKLA WCKE VVAAV  SDPA  RPSET     AADA CESSSCI P  PSSPAA EALEVLV+ALCELSGRSP
Sbjct:  561 AVGEEEPEAAXXXGGAARPRAGEAAIARVRSHLGPIVPALSAEELDALVSKLAQWCKEDVVAAVATSDPAARRPSETSAAATAADADCESSSCIAPP-PSSPAAVEALEVLVEALCELSGRSP 682
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BLAST of mRNA_Ecto-sp13_S_contig64544.17228.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.410e-5
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  103 PIIPA-LSAEELDALVSKLAHWCKEG-VVAAVPPSD 204
            PI+PA LS+EELDALVS+LA WCKE  VVA VPPSD
Sbjct:   23 PIVPAALSSEELDALVSRLAQWCKEDDVVATVPPSD 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64544.17228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV72_9PHAE4.410e-4982.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR69_ECTSI5.480e-4681.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE7.410e-577.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64544contigEcto-sp13_S_contig64544:48..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size356
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.523747-CDS-Ecto-sp13_S_contig64544:47..4011681463891.523747-CDS-Ecto-sp13_S_contig64544:47..401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64544 48..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64544.17228.1prot_Ecto-sp13_S_contig64544.17228.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64544 48..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64544.17228.1

>prot_Ecto-sp13_S_contig64544.17228.1 ID=prot_Ecto-sp13_S_contig64544.17228.1|Name=mRNA_Ecto-sp13_S_contig64544.17228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
AVGEEEPEAVAGAGGASRPRAGEAAIARVRSHLGPIIPALSAEELDALVS
KLAHWCKEGVVAAVPPSDPAPGRPSETAADAGCESSSCILPRLPSSPAAA
EALEVLVQALCELSGRSP
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mRNA from alignment at Ecto-sp13_S_contig64544:48..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64544.17228.1 ID=mRNA_Ecto-sp13_S_contig64544.17228.1|Name=mRNA_Ecto-sp13_S_contig64544.17228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=355bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64544:48..402+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTGGGAGAGGAGGAGCCGGAGGCGGTGGCGGGTGCGGGTGGTGCCTC
GCGGCCCCGTGCCGGCGAAGCAGCGATCGCTCGGGTACGCAGCCACCTCG
GGCCCATCATCCCTGCACTCTCGGCGGAAGAGCTGGACGCCCTCGTTTCC
AAGCTGGCCCATTGGTGCAAGGAGGGCGTCGTCGCCGCCGTGCCGCCTTC
CGACCCCGCCCCGGGAAGACCAAGCGAAACCGCCGCCGACGCGGGCTGCG
AGAGCAGCAGCTGCATTTTGCCCCGTCTTCCGTCTAGTCCTGCTGCCGCC
GAGGCTCTCGAGGTCCTTGTCCAGGCCTTGTGCGAGCTGAGCGGACGAAG
CCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64544:48..402+

>mRNA_Ecto-sp13_S_contig64544.17228.1 ID=mRNA_Ecto-sp13_S_contig64544.17228.1|Name=mRNA_Ecto-sp13_S_contig64544.17228.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64544:48..402+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTGGGAGAGGAGGAGCCGGAGGCGGTGGCGGGTGCGGGTGGTGCCTC
GCGGCCCCGTGCCGGCGAAGCAGCGATCGCTCGGGTACGCAGCCACCTCG
GGCCCATCATCCCTGCACTCTCGGCGGAAGAGCTGGACGCCCTCGTTTCC
AAGCTGGCCCATTGGTGCAAGGAGGGCGTCGTCGCCGCCGTGCCGCCTTC
CGACCCCGCCCCGGGAAGACCAAGCGAAACCGCCGCCGACGCGGGCTGCG
AGAGCAGCAGCTGCATTTTGCCCCGTCTTCCGTCTAGTCCTGCTGCCGCC
GAGGCTCTCGAGGTCCTTGTCCAGGCCTTGTGCGAGCTGAGCGGACGAAG
CCCC
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