mRNA_Ecto-sp13_S_contig6453.17224.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6453.17224.1
Unique NamemRNA_Ecto-sp13_S_contig6453.17224.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6453.17224.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.650e-5
Identity = 29/37 (78.38%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 MDMVVIIVLTASCFFSVAVNEYRSSVERAQTDGGLCG 111
            MDMVVIIVLTASCFFSVAVNEY SSV     D GL G
Sbjct: 1053 MDMVVIIVLTASCFFSVAVNEYSSSV-----DAGLLG 1084
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6453.17224.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.650e-5
Identity = 29/37 (78.38%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 MDMVVIIVLTASCFFSVAVNEYRSSVERAQTDGGLCG 111
            MDMVVIIVLTASCFFSVAVNEY SSV     D GL G
Sbjct: 1084 MDMVVIIVLTASCFFSVAVNEYSSSV-----DAGLLG 1115
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6453.17224.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.170e-5
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 3 
Query:  153 DSALLGAALVYVLQLGGLFQWAVRQ 227
            D+ LLGAALVYVLQLGGLFQWAVRQ
Sbjct: 1029 DAGLLGAALVYVLQLGGLFQWAVRQ 1053
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6453.17224.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 5.250e-5
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 3 
Query:  153 DSALLGAALVYVLQLGGLFQWAVRQ 227
            D+ LLGAALVYVLQLGGLFQW+VRQ
Sbjct:   14 DAGLLGAALVYVLQLGGLFQWSVRQ 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6453.17224.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 5.560e-5
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 3 
Query:  153 DSALLGAALVYVLQLGGLFQWAVRQ 227
            D+ LLGAALVYVLQLGGLFQW+VRQ
Sbjct: 1130 DAGLLGAALVYVLQLGGLFQWSVRQ 1154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6453.17224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSW3_ECTSI1.650e-578.38Multidrug resistance-associated protein-like prote... [more]
D8LSW4_ECTSI1.650e-578.38Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE2.170e-592.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW5_ECTSI5.250e-588.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A6H5JDN6_9PHAE5.560e-588.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6453contigEcto-sp13_S_contig6453:6843..8225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size229
Hectar predicted targeting categorysignal peptide
Exons3
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463891.236331-CDS-Ecto-sp13_S_contig6453:6842..69211681463891.236331-CDS-Ecto-sp13_S_contig6453:6842..6921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6453 6843..6921 +
1681463891.2484398-CDS-Ecto-sp13_S_contig6453:7332..74061681463891.2484398-CDS-Ecto-sp13_S_contig6453:7332..7406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6453 7333..7406 +
1681463891.2659073-CDS-Ecto-sp13_S_contig6453:8150..82251681463891.2659073-CDS-Ecto-sp13_S_contig6453:8150..8225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6453 8151..8225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6453.17224.1prot_Ecto-sp13_S_contig6453.17224.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6453 6843..8225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6453.17224.1

>prot_Ecto-sp13_S_contig6453.17224.1 ID=prot_Ecto-sp13_S_contig6453.17224.1|Name=mRNA_Ecto-sp13_S_contig6453.17224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MDMVVIIVLTASCFFSVAVNEYRSSVERAQTDGGLCGELGFDPEDLGVDA
QIRRYWEQRWCMFFNWAGCSSGLSGK
back to top

mRNA from alignment at Ecto-sp13_S_contig6453:6843..8225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6453.17224.1 ID=mRNA_Ecto-sp13_S_contig6453.17224.1|Name=mRNA_Ecto-sp13_S_contig6453.17224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1383bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6453:6843..8225+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATGGTGGTGATTATCGTCCTCACTGCTAGCTGCTTCTTCTCCGT
CGCAGTGAACGAGTACAGAAGCTCCGTCGGTGAGTGACGTGGAGTCAAGG
AAAAGAGGCGGAGTGTACAAATGTCTCTCGCGTTTTTGTGCGTGCCACCC
GTGATGGTTTCTTCGTCGATGGCGGATTCTTTGTTCCGCGTTATCGTTCG
CCTTGGCAGTTCGGGTTCAGGTCGAGAGGGTTCGGGCATCTCTGGCTGGA
TGAATGATTGCATGTGACCGTGTTGTTGTTCCCCCGCACAGGTAGCGTTC
AAAGTCAATGTTGCGTGTGCATCGGCGACCAAATCCAATGCGTCGGTGGG
TGTAGCCGCTTGTCCGCTAGCGGTAACTCATGTCGTTGCGGCTACATCGA
AATATATTTGTTTTCAATGACTTTCTCGGGCTGGAGCCTCGGGCGATTCT
CCTGGATGCTGCCTGAACATTCGGTACATCCATTTCAAAGAACGAGCACA
AACGGACGGCGGCCTATGCGGCGAACTTGGTTTTGACCCGGAAGATCTCG
GTGTGGACGCACAGGTTCGTTTCGTTTCATTGTAACGCCGATGAATCACA
GTGTCCGCACTTCTTTCTCTCTACATCATGTGGAACGAGGGGCCGTCGAC
GTCCAGGTCGTTTGTCCAAAATTTTTTTGGTGCCGTCCGTCCCGGACAGT
TCGCACAGTCGCCTCGGTCAGTCAATGATTCCAGGTTTTCTTTTGAGATT
TCGGGAAGACAATATATGGTTGAAGAACCCATTGCCCGGGATCGACGGTG
CACGTGCACGGAGGAGACGATTGTAGGGATCAAATTTGAGGCTACCGCAC
AACCCGCACGATGAAAGTGCATTCCACAATTGAAACATTGCGAGAAAAAA
ATGAAAATTTCAGAGATTGTCGCTGTCAACCAACGGAGGAGAATTGTCCG
GGGTCCAGACTGAAGCTGCCAAACAATGGAAAACCCAGTACCATAATGCG
CAACCGGTGTGGCGCCTTTTGGTGCGAAAACGGTCAGAGATACGAGATGC
ATTCAATCAACGGGACGAGAGCTACTCTTCAGTACATCTTTGCCCTTGAC
AGTGGGACGTTGCCTTTCGGGTTGTGCGGCGACCTCAGACTGCACCCCTA
CGTTGTTCTTCGGTTCGTTGGACCATCGCCGACAATGCGTTCAATCATGT
TTCACGCTGCGTTGGTTAAGGAATAGCGTTGCCCGGTGCAATTTCCTCGG
TATCATTTTGTTGTCTTCAGTTGGTTGTTGGGATTGTCGCGCCTCCGGTT
ACTGACAGATTCGGCGCTACTGGGAGCAGCGTTGGTGTATGTTCTTCAAC
TGGGCGGGCTGTTCCAGTGGGCTGTCCGGCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6453:6843..8225+

>mRNA_Ecto-sp13_S_contig6453.17224.1 ID=mRNA_Ecto-sp13_S_contig6453.17224.1|Name=mRNA_Ecto-sp13_S_contig6453.17224.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6453:6843..8225+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATGGTGGTGATTATCGTCCTCACTGCTAGCTGCTTCTTCTCCGT
CGCAGTGAACGAGTACAGAAGCTCCGTCGAACGAGCACAAACGGACGGCG
GCCTATGCGGCGAACTTGGTTTTGACCCGGAAGATCTCGGTGTGGACGCA
CAGATTCGGCGCTACTGGGAGCAGCGTTGGTGTATGTTCTTCAACTGGGC
GGGCTGTTCCAGTGGGCTGTCCGGCAAG
back to top