mRNA_Ecto-sp13_S_contig64402.17208.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig64402.17208.1
Unique Name	mRNA_Ecto-sp13_S_contig64402.17208.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 2.100e-33
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 1

Query:   64 CRSLQPVVTQKSPSLPSPPAVPCLQFLMREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGDR 330
            CR LQPVVTQKSPSLPSPPAV CL+FLMRE+FST FP CT EL LST PGAEAREKLTLQ +LAYAG+ T DL  RR R YQL+HRGDR
Sbjct:  122 CRLLQPVVTQKSPSLPSPPAVLCLRFLMREQFSTFFPLCTHELALSTRPGAEAREKLTLQEKLAYAGVRTSDLTSRRFRGYQLDHRGDR 210

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5JLU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU5_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.090e-25
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 1

Query:   64 CRSLQPVVTQKSPSLPSPPA--VPCLQFLMREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGD 327
            CR LQPVVTQKSP LPS     V  + F ++E FSTLFP CT EL LST PGAEAREKL +Q +LAYAGI TPDL  RR R+YQL+HRGD
Sbjct:   13 CRLLQPVVTQKSPPLPSLLRYFVVVVVFTLKE-FSTLFPLCTHELALSTRPGAEAREKLNVQEKLAYAGIRTPDLTSRRFRSYQLDHRGD 101

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5JMV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.380e-21
Identity = 49/62 (79.03%), Postives = 51/62 (82.26%), Query Frame = 1

Query:  145 MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGDR 330
            MREEFSTLFP CT EL LST PG EAREKLTLQ +LAYAGI TPDL  RR R YQL+HRGDR
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGTEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDR 62

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5L041_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L041_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.760e-21
Identity = 57/82 (69.51%), Postives = 63/82 (76.83%), Query Frame = 1

Query:   67 RSLQPVV-TQKSPSLPSPPAVPCLQFLMREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQ 309
            R+L P   T+ SPSLPSPPA+ CL+FL+R EFSTLF  CT  L LST PGAEAREKLTLQ +LAYAGI TPDL  RR R YQ
Sbjct:  813 RALVPFTPTRVSPSLPSPPAILCLRFLLRGEFSTLFTLCTHGLALSTRPGAEAREKLTLQEKLAYAGIRTPDLTSRRLRGYQ 894

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5JWH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWH1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 6.040e-21
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1

Query:  145 MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGDRL 333
            MREEFSTLFP CT EL LSTWPGAEAR+KLTLQ +LAYAGI TPDL  RR R YQ++HRGDR+
Sbjct:    1 MREEFSTLFPLCTHELALSTWPGAEARQKLTLQEKLAYAGIHTPDLTSRRCRRYQVDHRGDRI 63

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5L5P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5P9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.390e-20
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 1

Query:  145 MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGDRLH 336
            MREEFSTLFP CT EL LST PGAEAREKLTLQ +LAYAGI TPDL  RR R YQL+HRGDR H
Sbjct:    1 MREEFSTLFPLCTHELALSTGPGAEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRRH 64

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5L694_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L694_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.330e-19
Identity = 50/63 (79.37%), Postives = 52/63 (82.54%), Query Frame = 1

Query:  145 MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGDRL 333
            MREEFSTLFP CT EL LST PG EAREKLTLQ +LAYAGI TPDL  RR R YQL+HRGDRL
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGVEAREKLTLQEKLAYAGIRTPDLTSRRFRGYQLDHRGDRL 63

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5JD54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD54_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.840e-19
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 1

Query:  145 MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGDRL 333
            MREEFSTLFP CT EL LST PGAEAR+KLT+  +LAYAGI TPDL  RR R Y+L+HRGDRL
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGAEARDKLTVHEKLAYAGIRTPDLTSRRLRGYKLDHRGDRL 63

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5JFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFW4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.540e-18
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1

Query:  145 MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAY-AGI*TPDLVPRR*RAYQLNHRGDRL 333
            MREEFSTLFP CT EL LST PGAEAREKLTLQ +LA  AGI TPDL  RR R Y+L+H+GDRL
Sbjct:    1 MREEFSTLFPLCTHELALSTRPGAEAREKLTLQEKLASCAGIRTPDLTSRRFRGYRLDHQGDRL 64

[Close]

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Match: A0A6H5JZN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN8_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.140e-17
Identity = 45/61 (73.77%), Postives = 48/61 (78.69%), Query Frame = 1

Query:  145 MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*TPDLVPRR*RAYQLNHRGD 327
            MREEFSTLFP  T EL LST PGAEAREKLTLQ +LA AG  TPDL  +R R YQL+HRGD
Sbjct:    1 MREEFSTLFPLRTHELALSTRPGAEAREKLTLQEKLANAGSRTPDLTSKRFRGYQLDHRGD 61

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig64402.17208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20


Match Name	E-value	Identity	Description
A0A6H5JYQ0_9PHAE	2.100e-33	78.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLU5_9PHAE	2.090e-25	67.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMV9_9PHAE	1.380e-21	79.03	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L041_9PHAE	2.760e-21	69.51	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWH1_9PHAE	6.040e-21	77.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L5P9_9PHAE	2.390e-20	79.69	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L694_9PHAE	1.330e-19	79.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JD54_9PHAE	1.840e-19	74.60	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFW4_9PHAE	3.540e-18	75.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZN8_9PHAE	1.140e-17	73.77	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig64402	contig	Ecto-sp13_S_contig64402:2..604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	603
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Cds size	126

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463890.0181816-UTR-Ecto-sp13_S_contig64402:1..145	1681463890.0181816-UTR-Ecto-sp13_S_contig64402:1..145	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig64402 2..145 +
1681463890.0399935-UTR-Ecto-sp13_S_contig64402:271..604	1681463890.0399935-UTR-Ecto-sp13_S_contig64402:271..604	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig64402 272..604 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463890.0296426-CDS-Ecto-sp13_S_contig64402:145..271	1681463890.0296426-CDS-Ecto-sp13_S_contig64402:145..271	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig64402 146..271 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig64402.17208.1	prot_Ecto-sp13_S_contig64402.17208.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig64402 146..271 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig64402:2..604+
coding sequence from alignment at Ecto-sp13_S_contig64402:2..604+

protein sequence of mRNA_Ecto-sp13_S_contig64402.17208.1

>prot_Ecto-sp13_S_contig64402.17208.1 ID=prot_Ecto-sp13_S_contig64402.17208.1|Name=mRNA_Ecto-sp13_S_contig64402.17208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MREEFSTLFPRCTLELPLSTWPGAEAREKLTLQGELAYAGI*

mRNA from alignment at Ecto-sp13_S_contig64402:2..604+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig64402.17208.1 ID=mRNA_Ecto-sp13_S_contig64402.17208.1|Name=mRNA_Ecto-sp13_S_contig64402.17208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64402:2..604+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAGCTTCGCCAATTTTTTTTGTTTTTTGTTCTTGACTTCAAATCAGCG
CTCACAGCACTAGTGCCGTTCACTCCAACCCGTGGTCACACAGAAGAGCC
CCTCTCTACCCTCCCCTCCTGCGGTACCTTGCCTTCAATTTTTAATGCGA
GAAGAGTTTAGCACTCTCTTCCCTCGATGTACACTCGAACTACCGCTATC
CACTTGGCCAGGAGCGGAAGCGAGAGAAAAACTCACTTTGCAAGGAGAGC
TCGCCTACGCCGGGATTTGAACCCCTGACCTGGTCCCTCGTAGATAACGA
GCCTACCAACTTAACCACCGGGGCGACCGGCTTCATAAAAATATACGAAG
TAGACAAGAACACGGTACGCGTGAAAGCACGGAGGAATCATCCATGACAG
ACGTTGAGGGGGATGTGACCGGTCGATTCTACACGTGCGGTAGACGTGCC
TGCACCGCTGCTGTGCGTACAACAAACGCCCTACTGCAGCGTCTCTGAAT
GGAAAGAGGGGGAAATCTTTAGCGCCAGATGGATGAACGAACGCCGCCGA
AAACCAACGCACCACACCGCACAAATTGTTACAAATTATTTGTTTGTGTT
CTA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64402:2..604+

>mRNA_Ecto-sp13_S_contig64402.17208.1 ID=mRNA_Ecto-sp13_S_contig64402.17208.1|Name=mRNA_Ecto-sp13_S_contig64402.17208.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64402:2..604+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGAAGAGTTTAGCACTCTCTTCCCTCGATGTACACTCGAACTACC
GCTATCCACTTGGCCAGGAGCGGAAGCGAGAGAAAAACTCACTTTGCAAG
GAGAGCTCGCCTACGCCGGGATTTGA