mRNA_Ecto-sp13_S_contig644.17205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig644.17205.1
Unique NamemRNA_Ecto-sp13_S_contig644.17205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig644.17205.1 vs. uniprot
Match: Q6XLX6_9PHYC (FirrV-1-C2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLX6_9PHYC)

HSP 1 Score: 236 bits (601), Expect = 1.200e-72
Identity = 130/268 (48.51%), Postives = 169/268 (63.06%), Query Frame = 1 
Query:   10 DIVEVMQRQQGQKYNEDVNNKHFLPPLASLFNTKTGVCAWCPVEHTYQ-NTTYKVNVLCMPLLLWYNGKGCPDAKLAEMTTRAYFMQIDPHPEIPYQAFCAILEQT-FKPRQVSKQEARNRTNFLMVRLHTWKQRELHNEKDYPARPRTLSLERRQHQSYGHFGNNIAYTQCAPDDTSTGFYQPFERSFSMGEKALTPSMGRTWTKEMLDKPAIRAFFGIPEELRGKCNIVGGKLEHETIKTHAQGYAASRSSLEAAMNIGLKRAEFR 807
            D +E  +  +    NED   K  +P LASLFNT+TGVCAW PV HT     T+KV V+ + +L WY+ KG PD K+ EM    +FM I    +IPY+    +L +T FKP Q+S +E+ N   F +V    W++ E  N++ YP+RPR L L   +   +   GN +AY+Q AP D S+G+   FE+SFS  EK L P+MGR WT EMLD P I  FF IP +LRGKC+IVGGKLE  TI+THA  YAA + ++EAAMN  LKRAE R
Sbjct:  101 DKIETYENNRQGNLNEDPLAKSLMPSLASLFNTRTGVCAWKPVIHTDGVGKTWKVVVIDLNILKWYHTKGRPDEKVNEMKVTKFFMSILKEVDIPYEILSELLARTPFKPHQISTKESYNTHRFWVVSFSEWQKIEEENDRRYPSRPRRLRLANPK-TPFSSKGNTVAYSQNAPGDFSSGYVPGFEKSFSPEEKKLIPTMGRAWTLEMLDSPEIVEFFNIPADLRGKCHIVGGKLEPATIQTHAAAYAADKLNIEAAMNRRLKRAEDR 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig644.17205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q6XLX6_9PHYC1.200e-7248.51FirrV-1-C2 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig644contigEcto-sp13_S_contig644:15311..16117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size807
Hectar predicted targeting categoryother localisation
Exons1
Cds size783
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463889.794462-CDS-Ecto-sp13_S_contig644:15310..160931681463889.794462-CDS-Ecto-sp13_S_contig644:15310..16093Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig644 15311..16093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463889.80568-UTR-Ecto-sp13_S_contig644:16093..161171681463889.80568-UTR-Ecto-sp13_S_contig644:16093..16117Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig644 16094..16117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig644.17205.1prot_Ecto-sp13_S_contig644.17205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig644 15311..16093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig644.17205.1

>prot_Ecto-sp13_S_contig644.17205.1 ID=prot_Ecto-sp13_S_contig644.17205.1|Name=mRNA_Ecto-sp13_S_contig644.17205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
MQRQQGQKYNEDVNNKHFLPPLASLFNTKTGVCAWCPVEHTYQNTTYKVN
VLCMPLLLWYNGKGCPDAKLAEMTTRAYFMQIDPHPEIPYQAFCAILEQT
FKPRQVSKQEARNRTNFLMVRLHTWKQRELHNEKDYPARPRTLSLERRQH
QSYGHFGNNIAYTQCAPDDTSTGFYQPFERSFSMGEKALTPSMGRTWTKE
MLDKPAIRAFFGIPEELRGKCNIVGGKLEHETIKTHAQGYAASRSSLEAA
MNIGLKRAEFR
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mRNA from alignment at Ecto-sp13_S_contig644:15311..16117-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig644.17205.1 ID=mRNA_Ecto-sp13_S_contig644.17205.1|Name=mRNA_Ecto-sp13_S_contig644.17205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig644:15311..16117- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGGATGACATTGTCGAGGTGATGCAGCGGCAACAAGGGCAGAAGTA
CAACGAAGACGTCAATAACAAGCATTTTTTGCCCCCCTTGGCGTCTCTCT
TCAACACCAAGACTGGTGTATGTGCATGGTGTCCCGTGGAACACACGTAC
CAAAACACAACCTATAAGGTCAATGTTCTGTGCATGCCACTCTTGCTTTG
GTACAACGGGAAAGGATGCCCGGACGCCAAGCTTGCGGAAATGACGACAC
GTGCATATTTCATGCAGATTGACCCCCACCCGGAGATCCCGTACCAGGCG
TTTTGCGCCATCCTCGAGCAGACGTTTAAACCGCGGCAAGTTTCCAAGCA
AGAGGCTCGGAACCGCACAAACTTTCTGATGGTGCGGCTTCATACGTGGA
AGCAGAGGGAGCTTCACAACGAAAAGGATTATCCCGCCCGCCCCCGCACC
CTGTCGTTGGAGCGCAGACAGCACCAAAGTTATGGGCACTTCGGCAACAA
CATCGCGTACACCCAGTGCGCGCCTGACGACACCTCCACCGGCTTCTACC
AGCCGTTCGAGAGGAGTTTTTCGATGGGGGAGAAGGCTCTCACCCCGTCG
ATGGGACGAACGTGGACCAAGGAAATGCTGGACAAACCCGCCATCCGAGC
CTTTTTCGGCATCCCTGAAGAGCTTCGGGGCAAGTGCAACATCGTCGGCG
GCAAGCTGGAGCACGAGACGATTAAGACCCACGCTCAAGGTTACGCGGCG
AGTAGGAGCAGTTTAGAGGCGGCAATGAACATCGGGCTGAAGCGGGCGGA
ATTCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig644:15311..16117-

>mRNA_Ecto-sp13_S_contig644.17205.1 ID=mRNA_Ecto-sp13_S_contig644.17205.1|Name=mRNA_Ecto-sp13_S_contig644.17205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig644:15311..16117- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCGGCAACAAGGGCAGAAGTACAACGAAGACGTCAATAACAAGCA
TTTTTTGCCCCCCTTGGCGTCTCTCTTCAACACCAAGACTGGTGTATGTG
CATGGTGTCCCGTGGAACACACGTACCAAAACACAACCTATAAGGTCAAT
GTTCTGTGCATGCCACTCTTGCTTTGGTACAACGGGAAAGGATGCCCGGA
CGCCAAGCTTGCGGAAATGACGACACGTGCATATTTCATGCAGATTGACC
CCCACCCGGAGATCCCGTACCAGGCGTTTTGCGCCATCCTCGAGCAGACG
TTTAAACCGCGGCAAGTTTCCAAGCAAGAGGCTCGGAACCGCACAAACTT
TCTGATGGTGCGGCTTCATACGTGGAAGCAGAGGGAGCTTCACAACGAAA
AGGATTATCCCGCCCGCCCCCGCACCCTGTCGTTGGAGCGCAGACAGCAC
CAAAGTTATGGGCACTTCGGCAACAACATCGCGTACACCCAGTGCGCGCC
TGACGACACCTCCACCGGCTTCTACCAGCCGTTCGAGAGGAGTTTTTCGA
TGGGGGAGAAGGCTCTCACCCCGTCGATGGGACGAACGTGGACCAAGGAA
ATGCTGGACAAACCCGCCATCCGAGCCTTTTTCGGCATCCCTGAAGAGCT
TCGGGGCAAGTGCAACATCGTCGGCGGCAAGCTGGAGCACGAGACGATTA
AGACCCACGCTCAAGGTTACGCGGCGAGTAGGAGCAGTTTAGAGGCGGCA
ATGAACATCGGGCTGAAGCGGGCGGAATTCCGC
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