mRNA_Ecto-sp13_S_contig644.17204.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig644.17204.1
Unique NamemRNA_Ecto-sp13_S_contig644.17204.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig644.17204.1 vs. uniprot
Match: Q8QNP6_ESV1K (EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP6_ESV1K)

HSP 1 Score: 337 bits (863), Expect = 6.030e-112
Identity = 174/333 (52.25%), Postives = 201/333 (60.36%), Query Frame = 1 
Query:    1 VENFALTPEHANSIRQTLNRRRGISVVYLSVRSILQNCSHACLLLFDARTRKQHFFNPEGSMNFWLNIAFGNRPTTLVEGFETARVNEDAWPIYQQSMQAIVDNNHYRIDGNCALYCILVGVLCMRFGMGQPKLMGDLIVEALREIDTYNGLNVHQGNNYVGSHMTRLWNWMLLLMNHAKTMALP---------------------------------------------------------LRRGEVAEVD--VSPDNNVQR------------------------CFAYGKLCSTTACVGQAPCWQHKFLTRNHRLTGAGRMRCVAPQHPC 750
            +ENFAL+P HA SI QTLNRRRGISV +L V S  QNCSHACL+LFDARTRKQHFFNPE  +  W NIAF NRP+ LVEGF TA++NED WP YQQSMQ +VDNNHY + GNC LYC LVGVLC RFG+G+PKLMG++IVEAL+EIDTYN ++VH G N+VGSHMT LWNW++ + +H +TM+LP                                                         L+   V  V   V+PD   +R                            GKLCS  ACVGQ  CWQHKFLTRNHR TGAGRMRCVAPQHPC
Sbjct:   82 IENFALSPAHATSIMQTLNRRRGISVTFLHVMSTQQNCSHACLILFDARTRKQHFFNPEAHVGCWYNIAFSNRPS-LVEGFHTAQLNEDTWPTYQQSMQGVVDNNHYGLPGNCMLYCTLVGVLCTRFGIGKPKLMGEMIVEALQEIDTYNNVDVHHGINHVGSHMTHLWNWLISMTDHTETMSLPPLNYNSVNTEEMVNKRIHLRDKARQCLLDFPPLPGPPQFTVSETARRARLRNRQTQYLQTHPVIHVGHVVAPDTVAERRESIRDAEVQLLRLMFPPTIMCNVVLRTGKLCSRRACVGQPLCWQHKFLTRNHRRTGAGRMRCVAPQHPC 413
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BLAST of mRNA_Ecto-sp13_S_contig644.17204.1 vs. uniprot
Match: B5LWF5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF5_9PHYC)

HSP 1 Score: 157 bits (397), Expect = 7.600e-43
Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 1 
Query:    1 VENFALTPEHANSIRQTLNRRRGISVVYLSVRSILQNCSHACLLLFDARTRKQHFFNPEGSMNFWLNIAFGNRPTTLVEGFETARVNEDAWPIYQQSMQAIVDNNHYRIDG-NCALYCILVGVLCMRFGMGQPKLMGDLIVEALREIDTYNGLNVHQGNNYVGSHMTRLWNWMLLLMNHAKTMALPLRRGEVAEVDVSPDNNVQRCFAY----GKLCSTTACVGQAPCWQHKFLTRNHRLTGAGRMRCVAPQHPC 750
            + N  L  +   +I +    RRG++V+ L +RS+  +  HA LL+FD  TR QHFFNP G  N W+N AF  R + LVEGF  + V EDAWP    S+Q + DNN     G NC LYCI+V  +C+R+  G PK M D+ +E      T +        +  G  M +L+ W+  L  +     L    G +     +P +   RC  Y     + C    C     CWQH+ L RN+   G+ R RCVAPQ  C
Sbjct:   83 IRNLTLPDQTKKNITRMGRARRGVAVIALFLRSLNGDEHHASLLVFDGYTRTQHFFNPWGYRNHWMNEAFA-RKSPLVEGFRVSSVMEDAWPTEPISLQYLYDNNGIANGGGNCVLYCIVVAAMCLRYQKGNPKEMADIFMEVSTSAATAS-----LRKSIRGLQMRKLYFWVNSLNANVVLDTLSDLPGIIFPAPTNPLDT--RCGVYCPKRQRYCKRRRCPEDIFCWQHRHLIRNNHARGSNRRRCVAPQAKC 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig644.17204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNP6_ESV1K6.030e-11252.25EsV-1-13 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
B5LWF5_9PHYC7.600e-4336.47Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig644contigEcto-sp13_S_contig644:13754..14754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size753
Hectar predicted targeting categoryother localisation
Exons2
Cds size753
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463889.7520776-CDS-Ecto-sp13_S_contig644:13753..143101681463889.7520776-CDS-Ecto-sp13_S_contig644:13753..14310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig644 13754..14310 +
1681463889.7632763-CDS-Ecto-sp13_S_contig644:14558..147541681463889.7632763-CDS-Ecto-sp13_S_contig644:14558..14754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig644 14559..14754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig644.17204.1prot_Ecto-sp13_S_contig644.17204.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig644 13754..14754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig644.17204.1

>prot_Ecto-sp13_S_contig644.17204.1 ID=prot_Ecto-sp13_S_contig644.17204.1|Name=mRNA_Ecto-sp13_S_contig644.17204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
VENFALTPEHANSIRQTLNRRRGISVVYLSVRSILQNCSHACLLLFDART
RKQHFFNPEGSMNFWLNIAFGNRPTTLVEGFETARVNEDAWPIYQQSMQA
IVDNNHYRIDGNCALYCILVGVLCMRFGMGQPKLMGDLIVEALREIDTYN
GLNVHQGNNYVGSHMTRLWNWMLLLMNHAKTMALPLRRGEVAEVDVSPDN
NVQRCFAYGKLCSTTACVGQAPCWQHKFLTRNHRLTGAGRMRCVAPQHPC
*
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mRNA from alignment at Ecto-sp13_S_contig644:13754..14754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig644.17204.1 ID=mRNA_Ecto-sp13_S_contig644.17204.1|Name=mRNA_Ecto-sp13_S_contig644.17204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1001bp|location=Sequence derived from alignment at Ecto-sp13_S_contig644:13754..14754+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAAAATTTCGCGTTGACACCTGAACACGCGAATTCCATTCGCCAAAC
TTTGAACAGGAGGAGAGGAATCAGTGTCGTATATCTATCAGTACGATCCA
TTCTGCAAAATTGTTCCCACGCATGCCTTCTGCTGTTCGATGCTCGAACC
AGAAAACAACACTTTTTCAATCCGGAGGGGTCCATGAACTTCTGGTTGAA
CATCGCGTTTGGGAACAGACCCACAACTCTTGTCGAGGGGTTCGAGACTG
CACGTGTAAACGAAGACGCTTGGCCAATCTATCAGCAATCGATGCAGGCT
ATCGTGGACAACAATCACTACCGAATAGATGGCAATTGTGCTCTGTACTG
CATCCTGGTAGGCGTTTTGTGTATGCGTTTCGGCATGGGACAGCCTAAGC
TGATGGGTGATTTGATCGTCGAGGCCCTCCGAGAAATTGACACGTACAAC
GGACTGAATGTCCACCAGGGTAACAACTATGTGGGATCGCACATGACGAG
ACTCTGGAATTGGATGTTATTATTGATGAATCACGCGAAAACAATGGCTC
TTCCTTTGTTAAACGAGAACTCGGTCAACACTGCGTGGATGGTTAACAAG
AGGCTGCAGCGCAGGGAGCAAGCAAGAAAAAATTTAGAGGATTTCCCACC
ATTCCCAGGACCGCCCGAAAACACTGTGCATAAAGCCGCCAGAAGAGCGA
GGCTCCGAAACAATCAGTTGCAGTACGTGGAAACACACCCCGAGATATAC
ATTGGGCATACCATCGCCCCCGGCGTGGTCGCTGAGCGCCGTGCGGCTAT
CAGAGACGCCGAGGTGAGGTTGCTGAGGTTGATGTTTCCCCCGACAATAA
CGTGCAACGTTGTTTTGCGTACGGGAAATTGTGCTCCACAACGGCGTGTG
TCGGGCAGGCCCCGTGTTGGCAACACAAGTTCCTGACCAGAAACCACAGG
CTTACTGGTGCCGGTAGGATGAGGTGTGTCGCACCGCAACACCCCTGCTA
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig644:13754..14754+

>mRNA_Ecto-sp13_S_contig644.17204.1 ID=mRNA_Ecto-sp13_S_contig644.17204.1|Name=mRNA_Ecto-sp13_S_contig644.17204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig644:13754..14754+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAAAATTTCGCGTTGACACCTGAACACGCGAATTCCATTCGCCAAAC
TTTGAACAGGAGGAGAGGAATCAGTGTCGTATATCTATCAGTACGATCCA
TTCTGCAAAATTGTTCCCACGCATGCCTTCTGCTGTTCGATGCTCGAACC
AGAAAACAACACTTTTTCAATCCGGAGGGGTCCATGAACTTCTGGTTGAA
CATCGCGTTTGGGAACAGACCCACAACTCTTGTCGAGGGGTTCGAGACTG
CACGTGTAAACGAAGACGCTTGGCCAATCTATCAGCAATCGATGCAGGCT
ATCGTGGACAACAATCACTACCGAATAGATGGCAATTGTGCTCTGTACTG
CATCCTGGTAGGCGTTTTGTGTATGCGTTTCGGCATGGGACAGCCTAAGC
TGATGGGTGATTTGATCGTCGAGGCCCTCCGAGAAATTGACACGTACAAC
GGACTGAATGTCCACCAGGGTAACAACTATGTGGGATCGCACATGACGAG
ACTCTGGAATTGGATGTTATTATTGATGAATCACGCGAAAACAATGGCTC
TTCCTTTACGCCGAGGTGAGGTTGCTGAGGTTGATGTTTCCCCCGACAAT
AACGTGCAACGTTGTTTTGCGTACGGGAAATTGTGCTCCACAACGGCGTG
TGTCGGGCAGGCCCCGTGTTGGCAACACAAGTTCCTGACCAGAAACCACA
GGCTTACTGGTGCCGGTAGGATGAGGTGTGTCGCACCGCAACACCCCTGC
TAA
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