mRNA_Ecto-sp13_S_contig12002.1720.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12002.1720.1
Unique NamemRNA_Ecto-sp13_S_contig12002.1720.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: D8LRU3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU3_ECTSI)

HSP 1 Score: 622 bits (1604), Expect = 2.630e-220
Identity = 308/342 (90.06%), Postives = 318/342 (92.98%), Query Frame = 1
Query:    1 VVCKPSVTVESELVDTAQKAVIALDVGSAATLNTQQQSKVGTPASVISTGAVAHQPVGGIGDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPRNAHTAVLDGETMIVIAGASPEEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCDLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG*VTTV 1026
            VVC+PSVTVESE       AVIALD+ SAATL+TQQQSKVG PASV STGAVAH PVGGIGDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTK+GSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALG+SLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWV LPCVDIPPRNAHTAVLDGETMIVIAGASPE QTDDVFTIDLS+R+NLACRRVFC+P ESGTGE  CSEG+GGVPAAREMHSTCAYNS+GTTGER TTILLMGGRSAGGVL DLFALRTDTWTWKRLKDAPVARCAHSACFVQ AG MAIYGGWDG  T  
Sbjct:   26 VVCEPSVTVESE------PAVIALDIRSAATLDTQQQSKVGKPASVTSTGAVAHPPVGGIGDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKVGSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGESLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVPLPCVDIPPRNAHTAVLDGETMIVIAGASPEGQTDDVFTIDLSNRANLACRRVFCQPFESGTGERRCSEGVGGVPAAREMHSTCAYNSEGTTGERATTILLMGGRSAGGVLRDLFALRTDTWTWKRLKDAPVARCAHSACFVQAAGIMAIYGGWDGGTTVA 361          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A7S2AZD4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZD4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.430e-34
Identity = 100/289 (34.60%), Postives = 139/289 (48.10%), Query Frame = 1
Query:  181 GDRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLFGGADERQQHFSDIHCFDAAIGKWEKTPVS---GAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPP--RNAHTAVLDGET-MIVIAGASPEEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERET----TILLMGGR-SAGGVLCDLFALRTDTWTWKRLKDA-PVARCAHSACFVQTAGTMAIYGGWDG 1011
            G+ S+ G  W C+     SS   PS RGGC+ T +GS   + GGAD    H +D+H  D    +W +  V+    A PSPR+GHS VA G  LV++GG N      +ND+F L     E + W         P  RN+H+A +   T M+V  GAS     +DV  +DL+D S    + V C+               G  P AREMHS   + +             +IL++GGR  +G VL D ++L   TW W +   A P  RCAH A  V +   + ++GG DG
Sbjct:  101 GEVSADGGAWTCECRV--SSANFPS-RGGCTATMVGSSMFVVGGADRAGNHMNDVHVLDTTSWEWRQATVAQDAAAAPSPRSGHSTVACGSHLVLFGGANMSVEACYNDVFLLATDGDE-LTWSQADPSGPKPTARNSHSATMVSPTAMVVFGGASEMGPLNDVHVLDLADLSAPVWQAVQCQ---------------GLAPTAREMHSATLWPTVDAMAAESVAQAPSILVLGGRVESGEVLADAWSLNPGTWAWTKSDHALPTPRCAHVATVVNSQ--VVLFGGIDG 368          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: W4HAK8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HAK8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.110e-31
Identity = 96/267 (35.96%), Postives = 140/267 (52.43%), Query Frame = 1
Query:  250 PSPRGGCSWTKI-----GSKFVLFGGADERQQHFSDIHCFDAAIGKWE--KTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV--DIPP-RNAHTAVLDGETMIVIAGASPEEQT-DDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCD-LFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAI-YGGWDG 1011
            PS RGG + T +      +   L GGA+   + F D+H FD    +W   K  +     +PR+GH+AVA G  + V+GG N + G  FNDL  L    T+ M W S P V  D+PP RN+H AV   + M+VI G+SP+    +DV+ +   D  +++ RR+  +PS S             V + RE+H+ CA + +         IL++GGRS+ G+LCD +  L TD+WTW         RCAH+A  +   GT  + +GGW G
Sbjct:   44 PSKRGGATLTAVLAAQGNTLLYLIGGANRAAETFGDVHVFDWDAKRWTQAKPSIGSTTFTPRSGHTAVARGSRIYVFGGANLRVGAVFNDLHVL---DTDTMTW-SQPEVGGDVPPARNSHVAVATDKGMVVIGGSSPQVGAMNDVYLLAWDD--DMSWRRI--RPSSST------------VMSKRELHAACAIHDR---------ILVVGGRSSSGILCDDVCELHTDSWTWTITPLTSWHRCAHAAGVL--GGTHWVHFGGWGG 279          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A024UU46_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU46_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.640e-29
Identity = 96/270 (35.56%), Postives = 136/270 (50.37%), Query Frame = 1
Query:  244 QQPSPRGGCSWTKIGSK-----FVLFGGADERQQHFSDIHCFDAAIGKWE--KTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV--DIPP-RNAHTAVLDGETMIVIAGASPEEQT-DDVFTID--LSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
            Q P+ RGG + T + S        L GGA+   + F D+H  D    +W   K  +  AP  PR+GH+AVA G  + V+GG N +    FNDL  L    T  M+W+  P V  D+PP RN+H AV     M+VI G+SP+    +DV+ +    SD   L  RR++  P+ +             + + RE+HS C        G+R   IL++GGRS+ G LC DL  L TD+WTW         RCAH++  V     +  +GGW+G
Sbjct:   43 QLPAKRGGATLTAVTSAQGKTLLYLIGGANRAAEAFGDVHVLDWETMRWNQAKPLLESAPFIPRSGHTAVAWGSRIFVFGGANLRIDTVFNDLHVL---DTVQMKWLR-PIVGGDVPPPRNSHVAVATAHGMVVIGGSSPQVGAMNDVYLLPWPASDGDALRWRRIY--PTST-------------LMSKRELHSACV------DGDR---ILVVGGRSSSGQLCSDLCVLNTDSWTWTITPLPAWQRCAHASGVVGRTRWLH-FGGWEG 283          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A6G0XP48_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP48_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.720e-28
Identity = 87/280 (31.07%), Postives = 132/280 (47.14%), Query Frame = 1
Query:  202 ETWVCKTIAASSSTQQPSPRGGCSWTKIGSK----FVLFGGADERQQHFSDIHCFDAAIGKW-EKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVD---IPPRNAHTAVLDGETMIVIAGASP-EEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCD-LFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
            +T+      A+  +  P+ RGG + T + S+      L GGA+   + F+D+H FD    +W + +P   +   PR+GH+++A+G  + V+GG N ++G  +NDL  L    T+ MEW S PC D    PPR++H AV   + M++  G+SP     +D F   L+ +      +    P  +               A RE+HS C  N+          + + GGR   G LCD L  L T+TWTW         RCAH +  V        +GGWDG
Sbjct:   28 KTYTLSACPATYDSNLPAKRGGATLTPVTSEGKTLLYLIGGANRAAEAFNDVHVFDYDKKRWTQASPQDNSAFEPRSGHTSIAIGACIYVFGGANLREGKVYNDLHILN---TDTMEWTS-PCADGDIPPPRSSHIAVALPQGMLIFGGSSPLVGGMNDTFL--LTSKDGHFTWKSIASPEAA-------------TLAKRELHSACVLNN---------LVYICGGRLESGELCDELSILDTETWTWTIESMPAWRRCAHVSGVVHNQWLH--FGGWDG 277          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A6A3HB55_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3HB55_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.020e-26
Identity = 86/285 (30.18%), Postives = 137/285 (48.07%), Query Frame = 1
Query:  208 WVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLF--GGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDL--FELRPGSTEGMEWVSLPCV-DIP-PRNAHTAV--------LDGETMIVIAGASPE-EQTDDVFTIDLSDRS-NLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
            +  +++A   S  +P+ RGG + T++G   +++  GGA+     F D+HCFD     W+    S    SPR+GHSAVA+G  + V+GG++   G ++ND+  F+ R  S     W       + P PRNAH A+        L+   M+V  G+SP+   +D++F + +     + A R     P              G VP ARE+HS    +        E+ I   GGR+  G +C D+  L   +WTW+ +      RC+ +A  +   G +  +GGWDG
Sbjct:   11 YAVESVAMDESALKPAKRGGATLTQVGEGGLVYLIGGANREGASFGDVHCFDFETRAWKLVSPSSGSLSPRSGHSAVAVGAKIYVFGGLDVAAGASYNDVNVFDTRTSS-----WCEAAVEGEAPRPRNAHAAIVLPEEDDSLETRRMLVHGGSSPKFGASDELFLLHVPVHDVDTALRWEKLSPD-------------GEVPEARELHSALLQS--------ESAICFAGGRNFDGKICTDMATLDIKSWTWQLVPICEWNRCSLAAGVID--GELVSFGGWDG 267          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A6G0NCE7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NCE7_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.390e-26
Identity = 95/343 (27.70%), Postives = 153/343 (44.61%), Query Frame = 1
Query:  208 WVCKTIAASSSTQQPSPRGGCSWTKIGSKFVLF--GGADERQQHFSDIHCFDAAIGKWEKTPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEW--VSLPCVDIPPRNAHTAVL--------DGETMIVIAGASPEE-QTDDVFTIDLSDRS-NLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWD-G*VTTVRSHRLDADRPHSR*VL--------WEPQLVEIGTK*RKCTRMKRSFTVDPTLHP 1164
            +  +++A   S  +P+ RGG + T++G   +++  GGA+     F D+HCFD     W+    S    SPR+GHSAVA+G  + V+GG +   G TFND+       T  + W   ++   +  PRNAH A++        +   M+V  G+S E   +D++F + +     + A R     P    T           VP ARE+HS    +        E+ I  +GGR+  G +C D+  L   +WTW+ +      RC+ +A  +   G +  +GGWD G +     H  D +       L         EP + E+  +   C     + TV P+  P
Sbjct:   58 YAAESVAMDDSALKPAKRGGATLTQVGEGGLIYLIGGANREGASFGDVHCFDFETRAWKFVIPSSGSLSPRSGHSAVAIGSKIYVFGGFDVAAGATFNDV---NVFDTRTLSWYEAAVEGEEPRPRNAHAAIILPEDDDSRETRRMLVHGGSSLEVGASDELFLLHVPVHDVDTALRWEKLSPDGERTS----------VPEARELHSALLQS--------ESAICFVGGRNFDGKICTDMATLDIKSWTWQLMPICEWNRCSLAAGVID--GALVSFGGWDVGRICGDCCHYSDEEESWIHATLAECKTGNQTEPAMPEVPERFGHCGT---TITVQPSNQP 374          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: T0RGB5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RGB5_SAPDV)

HSP 1 Score: 118 bits (296), Expect = 7.360e-26
Identity = 94/286 (32.87%), Postives = 138/286 (48.25%), Query Frame = 1
Query:  184 DRSSRGETWVCKTIAASSSTQQPSPRGGCSWTKI---GSKFV-LFGGADERQQHFSDIHCFDAAIGKWEKTPVSGAPP-SPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV--DIP-PRNAHTAVLDGETMIVIAGASPEE-QTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
            D +++  T   K +  ++S   P+ RGG + + +   G K + L GGA+   + F+D+H ++   G W +  V+ +     R+GHSAV LG  + V+GG+N     TFND+  L    T    W S P V  D P PRNAHTAV+    M+VI G+SP +    DVF + + + + L   R+ C                G V A RE+H+    ++K     RE  I + GGR   G LC ++  L   +WTW         RC H    + T   +  YGGWDG
Sbjct:   20 DDAAKEATASYKRVDCAASGDVPAKRGGATLSLVEAHGEKLLYLIGGANREARMFNDVHVYNVGTGSWSQVHVANSAAFQARSGHSAVVLGTRIFVFGGLNLPLQTTFNDVHIL---DTATKSW-SAPIVLNDPPRPRNAHTAVVTTNGMVVIGGSSPTDGPMSDVFLLTVHEPT-LRWIRIDCN---------------GPVMAPRELHAAVRLSTK-----RER-IYVSGGRLENGQLCCEVATLDVASWTWHVQSSGGFRRCGHVIGLLDTG--IVQYGGWDG 277          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A329RY93_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RY93_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.120e-25
Identity = 89/279 (31.90%), Postives = 132/279 (47.31%), Query Frame = 1
Query:  220 TIAASSSTQQPSPRGGCSWTKIGSKFVLF--GGADERQQHFSDIHCFDAAIGKWEKT-PVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCV-DIP-PRNAHTAVLDGET--------MIVIAGASPEEQT-DDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
            ++    ST +P+ RGG + T+I    V++  GGA+     F DIH FD    +W    P SG+ P PR+GHSAVA+G  + V+GG++      +ND+       T+   W       + P PRNAH A+   +T        M+V  G+SPE    +D++ + +    N   R   C P              G +P ARE+H  CA        + ETT+   GGR+  G +C D+  L    WTW+ +      RC+ +A  V   G +  +GGWDG
Sbjct:   23 SVDGGKSTLKPAARGGATLTQIEETGVVYLIGGANREGTSFGDIHRFDLDTSRWTLIKPSSGSFP-PRSGHSAVAIGAKIYVFGGLDAASSGIYNDVHIF---DTQTSSWTKAAIKGETPLPRNAHAAIALPQTDNSMGSRKMLVYGGSSPEYGAFNDLYLLHIPAGDNQPLRWEKCTPE-------------GEIPEARELH--CALL------QSETTVCFAGGRNFDGKVCTDMALLDFSNWTWQLMPICEWNRCSLAAGAVD--GELIAFGGWDG 274          
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: A0A485LBL5_9STRA (Aste57867_18946 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBL5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.340e-25
Identity = 90/264 (34.09%), Postives = 129/264 (48.86%), Query Frame = 1
Query:  250 PSPRGGCSWTKIGS----KFVLFGGADERQQHFSDIHCFDAAIGKWEK-TPVSGAPPSPRNGHSAVALGDSLVVYGGMNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPP--RNAHTAVLDGETMIVIAGASPEEQT-DDVFTIDLSDRSN-LACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 1011
            P  RGG + T I +    +  L GGA+     F+D+H F+    KW + +P + +  +PR+GHSAVA G  + V+GG+N Q G  +NDL  L    T  MEW         P  RN+H AV     M+V+ G+SP   T +D F +  S   + L  + + C P +              +P  RE+H+ CA  S+G        + + GGR   G LC +L  + TDTWTW R +     RCAH++  +        YGGWDG
Sbjct:   44 PPKRGGAALTSITTQGKTRIYLIGGANRDADAFNDVHIFNLEEKKWTRVSPRNSSAFTPRSGHSAVAHGSFIYVFGGVNMQLGEVYNDLHVL---DTVTMEWTQPNARGAAPSPRNSHAAVATTRGMLVLGGSSPHVGTMNDAFLLPWSGSDDELEWQSIAC-PHD--------------LPK-RELHAACA--SRGL-------VYVCGGRLETGQLCGELSIVDTDTWTWTRSQLPMWHRCAHASGIL--GSQWVHYGGWDG 277          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU3_ECTSI2.630e-22090.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2AZD4_9STRA5.430e-3434.60Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W4HAK8_9STRA5.110e-3135.96Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024UU46_9STRA8.640e-2935.56Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XP48_9STRA3.720e-2831.07Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A3HB55_9STRA2.020e-2630.18Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A6G0NCE7_9STRA2.390e-2627.70Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
T0RGB5_SAPDV7.360e-2632.87Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A329RY93_9STRA2.120e-2531.90Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A485LBL5_9STRA3.340e-2534.09Aste57867_18946 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12002contigEcto-sp13_S_contig12002:3..5059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score355.5
Seed ortholog evalue1.5e-95
Seed eggNOG ortholog2880.D8LRU3
Model size1484
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-08_002460.1
Cds size549
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12002.1720.1prot_Ecto-sp13_S_contig12002.1720.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12002 2561..4589 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.8585165-UTR-Ecto-sp13_S_contig12002:2..1191681462637.8585165-UTR-Ecto-sp13_S_contig12002:2..119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12002 3..119 +
1681462637.867761-UTR-Ecto-sp13_S_contig12002:1280..14451681462637.867761-UTR-Ecto-sp13_S_contig12002:1280..1445Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12002 1281..1445 +
1681462637.8816664-UTR-Ecto-sp13_S_contig12002:2132..22311681462637.8816664-UTR-Ecto-sp13_S_contig12002:2132..2231Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12002 2133..2231 +
1681462637.892202-UTR-Ecto-sp13_S_contig12002:2476..25601681462637.892202-UTR-Ecto-sp13_S_contig12002:2476..2560Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12002 2477..2560 +
1681462637.9306226-UTR-Ecto-sp13_S_contig12002:4589..50591681462637.9306226-UTR-Ecto-sp13_S_contig12002:4589..5059Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12002 4590..5059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.9012003-CDS-Ecto-sp13_S_contig12002:2560..26121681462637.9012003-CDS-Ecto-sp13_S_contig12002:2560..2612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12002 2561..2612 +
1681462637.9109185-CDS-Ecto-sp13_S_contig12002:2839..32231681462637.9109185-CDS-Ecto-sp13_S_contig12002:2839..3223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12002 2840..3223 +
1681462637.9208217-CDS-Ecto-sp13_S_contig12002:4476..45891681462637.9208217-CDS-Ecto-sp13_S_contig12002:4476..4589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12002 4477..4589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12002.1720.1

>prot_Ecto-sp13_S_contig12002.1720.1 ID=prot_Ecto-sp13_S_contig12002.1720.1|Name=mRNA_Ecto-sp13_S_contig12002.1720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPRNAHTAVLDGETMIV
IAGASPEEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGV
PAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCDLFALRTDTWTW
KRLKDAPVARCAHSACFVQTAGTMAIYGGWDG*
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mRNA from alignment at Ecto-sp13_S_contig12002:3..5059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12002.1720.1 ID=mRNA_Ecto-sp13_S_contig12002.1720.1|Name=mRNA_Ecto-sp13_S_contig12002.1720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12002:3..5059+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGTGCAAACCTTCTGTGACTGTCGAAAGCGAACTTGTTGATACCGC CCAGAAGGCCGTGATCGCTCTTGATGTCGGTTCAGCCGCGACGTTAAATA CACAACAACAATCGAAGGTGTGTGCCTACAGCAGTACAGGATCTGATGCT GATACAACTAAGAGGTACTGACATATACTCGAGAGTTCAGCTTGGAGTAT CACCAACATTTTTTTGTCGTCAATTTTTGGTGGATATATGCAGCCGGACA ACGACGTGACAACAGGCCGCATAGACTAAATAGGAGCCTACCTCTGCCGT GGCTGTAAAACATGTGTAGTGTACAGCATGTAAATAGTGTAGTGGCGCTG GTGGTGTCTTCATCTTTCAACGTTCCCTTCGAAGATTCAAGGTACCGTAC ACAAGCGTCAGCAGCACTGGGTCGCAAGCGAAGGGCAACAGAGTGGCGGG GGGTGCAACTCTTCAGGAGTGTATTCTGAGGCAATGCGGCATGAGGGCTT TTACGATTGTCTGTGTACCCCGCACAGTTTCTCTCACTGCATGTATGTGC GGAGTTTCTTAAGCGCACTTACTTGTTAGTGTGCAGCCAGAGTTGAGCAC TTGAGCAGCTACACTTCTGCGGATAAATGAAAGGTTAGAAACTTTGCAGC AAGGGAGGTGCTCATGAGACTATGTGATTACGATGTGGCCAGTTTTATTG ACGGGGCCGTGTGGTATGCATCCTTCCCTGCCTGCGGTTCAGCAAGATTC GCACTAGTTACTGTACAATTGGACGTCTGATGTGGTGACTGGACAACAGC CTGACCAGCCGTGAGAGGAAACAGACACTTCAAAGAGTGCGCACCATTGG CGAGGGTGTTCCTCAAACGCCCATCCGCACGCCTCAGCCCCAACCACCAA CTGTAGCTCCTCTCGTCGCAATCTGTACATACCTCAATGCGATGTTCATC CCCGACTGTCGCACGTTATGACCCGACCCCGATATAACCCGACCACGAAA ACTACATAACTTGTCTACCATTGTAGACTAGTTGTGCTCCGGATTCTCAT CGCACGTGGTTGCTGTTTGTATTCCCAGCTTTGCGACAACCCATGCCCAG GCAATCAACTCACTCTCTAGACCGGCGTGGCAGAACGAAAGCCCCCGAGA AGGTACACAGAGACCAAATGGAGTGCGCGGGTAGAGAAGGCAGGTTTGGT TGCATCTGATCGGATCAGTTATTATGAAACATGACGCTCCGAGCTTGAAC TGCTTTTGTTGGATCTGGACCGCTCCAGGTAGGGACGCCGGCGAGTGTTA TCAGCACCGGTGCGGTGGCGCATCAACCTGTAGGCGGCATCGGAGACCGA TCATCACGTGGTGAAACTTGGGTTTGTAAAACGATAGCGGCAAGCTCTTC GACGCAGCAGCCATCTCCCAGAGGGGGTTGCTCGTGGACGAAGGTCAGAG CTACATTAGTTCTCCCCTTACTCGTAGAGGTTGGGGGTGTAGTCACAAGC TGTGTTGCAATCAACGAGGTTTTACGCCAGATACAAACCGAAACAAGCTT AAAACCGCGAGGCCTGCATGCCACAAAGGATGTAACGTCTAGTAGACAAA CAGCAAGACTGGGCAGATATCACCACCAAGAACGCTAGCCCGCGTTTGTT GGTGCATTCGCATGTGATTTTTGCGGATGAGACATCCATTTGGTTTGAAG AACATCGATCAAAACAGGACCGCCGTGTTTCCGTATTCCGTGATTGACGG AGGAAAGTAGAATGTGCTACGTCATTTCTGCATTGCAGTTGGTGGCGACC AAGCTAACAGCCAGCTTAGCTTTATTCTCGCCAATCCTCTCCTCCGGTTG AGCAAATATCCATGCGTCTGTCTGTGACACAGGCTTCGAGGTAAACGATT GTTTCTAGTGCCTGTTCGTGTTGTGCCCACAGCATCAGGAAGCGAACGTA GGATGCAGTGAAACTGGTGCGTGCATTGTCATTCTTTCAGCCGTCTTGTT GGCGGGCAGGGTCTCGAGTCTGGCCGTCAGCGTTGGATCTGCACCGAGAA ATTTCGCGACCTGTTTCAACCTTCTATGCAGGAGTTCGCATTATGTACAG ACGATACCTCATGTGTCGTGTGGCGCACAGATTGGATCGAAGTTCGTCCT GTTTGGAGGGGCGGACGAACGTCAGCAGCACTTTTCCGACATTCACTGCT TTGACGCGGCAATAGGGAAATGGGAGAAGGTACGTGTTAATTTGCTGTGC CAAACGCGGTGATGAACACAGTGTGCAGCCTTTCATCCTTCATCATATGC ATGCCAGCACATTTGTCAATAAATTGGGAATCGTGTCTGTTGGTTCATGG CAAATGGTACGCAAGAATATCGTCTTGTGACACATGAAGAGGTGCGTTCC GTTAGATACGCGTCAAGAACATAAACATGTCGCTATTCTCACCCGAAAGG ACCGCGACACTCCGCTGCAAGCAGACCCCTGTCAGTGGTGCGCCACCTTC CCCGCGGAATGGTCATTCGGCGGTCGCACTGGGAGATTCTTTGGTGGTCT ACGGCGGTATGAATGGACAGGATGGTGTGACTTTCAACGACCTGTTCGAG CTCCGACCCGGTGGGTAGGTCGGCGTGATCTTGTCCGCGGTTCTGTCATC ATAGTATCAGTGTGCTGGTTCCATAACGTACGGCCGTGCCGTTAAGATTC AATCTCCTCGCCACAGCGTCTTTTTAGGTAGATTTTGCTCCAAAGTCCGA CTGTACAGGACCTCAGCAGCGAACCGTAGCTTGGTCTACCAAAACATGAC CCCACGCGTCACCCAACTGGGATTCATTGTTGTGCAGGATCTACGGAGGG CATGGAGTGGGTGTCCCTTCCCTGTGTGGACATCCCTCCTCGTAATGCAC ACACTGCAGTACTCGATGGGGAAACCATGATAGTGATCGCAGGGGCTTCC CCGGAGGAACAAACAGACGACGTTTTCACCATCGACTTGTCCGATCGTTC AAACTTGGCCTGTCGGAGAGTGTTCTGCAAGCCGTCCGAATCAGGGACTG GTGAAATACATTGTTCGGAAGGCATTGGAGGAGTACCAGCCGCACGCGAG ATGCACTCGACCTGTGCTTATAACTCCAAGGGGACGACGGGTGAACGGGA GACTACAATATTGCTCATGGGCGGACGTTCAGCTGGGGGTGTGCTTTGTG ACCTGTTTGCGCTCAGAACAGGTACGAATGAACCATCGATTTCTGATAAG AGAACTACGTGCCAGGCCAGGTGTTAACGATGTTCGAACAAATGAAAATT CAGTCGTCAAAGTACCAAAATCAATTAACATTTTCCCCTGAAACTGAGAG AAATCGGCAGACTCTGTACGAAGAATGGTTCGGGAGAGAAGTAAAAACAA ACGTAGCGCGAGAGGGAGCGCCAGCGGGAAGCATTTTCTCACGTGCAGTT TTGTACGCTTCAGTTCACATGTTGACGAACATCTTGCCGAATAAATGACG AGAAGCCTTGGGGGTTGGTGTGCCACTGTGGGTGCCATGGCTTTTTGGCA AAGATGTGGCACCGTAGGGTGCCAAATATGTCGCAAAATTACAATGGAGT GACTGGAAGAATTCAACGTCAGAGGGTAGTAGGTTTGTGTCGGTATTGTT GACTCCGTATGGGTTTGATTTTCCGCCCATAACGTTTTGAAGGAGGAAGC AACAGCCGTAACAATTGGTAGCTTTGCAGTCCATTTTTCATGCCCAAGGT TTGATGCTGTAGAATGTTGTGTTTATCAGGAAAAAATATTGCAACTATCC TCTCTCGCACAAGAACGCGCAAATCAACGGTTCAGCTCTGCTCTTATCAT CGGCCTCAATCGCAGTTGTGGCGATCGACGTTTTCTCTCGAAGAACCGCG TGAGCCGGTCGGTTTTGGGCTTGCCGGGGAGCAGTGTGTCTTTTCTAGCT TTTGTGCCACGAGCACTCGTGGTTTCGGTAATGGGGGTGTCAATAGCCTC ACTTCGACCAGTGTATGCATCAACTTTGAGCAGCCCCGCGGGATCTGATC GAACAGAGCGACCCCTGCAAGCCTTGCATGTATGCACCCAATTTGAGCAG CCCCGCGGGATCCGATCGAGTAGAGCGACCCCTGCAAGCCGTGTGCGTTT TTGATTGGTTTGGATTGAAGAAATACGTTGGGGACTCCAGCAATGCTGAA AATTAAATGGCGTCTTTCGGAGGTATCGATCCTTCGACTCACTCATCTCT CTGGGTGTAGGTTTTTTCGTTTTGCGAATATCGTTACAACCCGGCCTCAG CTATTACGCAGTGTAGTCGATCAAGGGAATTTAAAATCAGTATCAGCGCG CGAGAGACGATCCATATATTCACGTTTCTGTGTGACACGTCTCTAGGATA GGTCCAATAAATACGCCACAGAAATGCCGTTCTTGACGCGAAGCCTTTTC TTCTGCCTGTAATAACTCTCACAGATACCTGGACATGGAAGCGATTAAAA GATGCTCCTGTTGCCCGGTGCGCCCATTCAGCTTGCTTCGTACAAACCGC AGGGACCATGGCCATCTACGGGGGATGGGATGGGTAAGTGACCACTGTAC GATCGCACAGATTGGATGCAGATCGCCCCCATAGTCGGTAAGTCTTGTGG GAACCACAGTTGGTCGAAATTGGCACGAAATAACGCAAATGTACCAGGAT GAAACGCAGCTTCACGGTGGACCCCACACTACATCCTGCTTGGTCGCCTG TTCAGAGCGATTCAGTGACACGAGCACATGAACCTCAACCCAACATTGTG CATCTTAGCTGCGGGGAACTTTTATGGTACTTGGAGGTAGACACGTGATC GTGGTTGACGATGGATATTTAACGTCGTCAGATGCTATGACGCGACGTCA TGCCAGATTGGGGCTTTATGGCGAGGCATGTGCCCTTCTGTCCAGTGTGC GCACGATCCAGTAATCGTGTGTGCTTGGGATCTGTGAGTTGGCATGGGAA AGCGTTAATCAAGAGAAAGAGAACAACGAAAGCAGCAACAACCTGCACCT GTGGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12002:3..5059+

>mRNA_Ecto-sp13_S_contig12002.1720.1 ID=mRNA_Ecto-sp13_S_contig12002.1720.1|Name=mRNA_Ecto-sp13_S_contig12002.1720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12002:3..5059+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGGACAGGATGGTGTGACTTTCAACGACCTGTTCGAGCTCCGACC
CGGATCTACGGAGGGCATGGAGTGGGTGTCCCTTCCCTGTGTGGACATCC
CTCCTCGTAATGCACACACTGCAGTACTCGATGGGGAAACCATGATAGTG
ATCGCAGGGGCTTCCCCGGAGGAACAAACAGACGACGTTTTCACCATCGA
CTTGTCCGATCGTTCAAACTTGGCCTGTCGGAGAGTGTTCTGCAAGCCGT
CCGAATCAGGGACTGGTGAAATACATTGTTCGGAAGGCATTGGAGGAGTA
CCAGCCGCACGCGAGATGCACTCGACCTGTGCTTATAACTCCAAGGGGAC
GACGGGTGAACGGGAGACTACAATATTGCTCATGGGCGGACGTTCAGCTG
GGGGTGTGCTTTGTGACCTGTTTGCGCTCAGAACAGATACCTGGACATGG
AAGCGATTAAAAGATGCTCCTGTTGCCCGGTGCGCCCATTCAGCTTGCTT
CGTACAAACCGCAGGGACCATGGCCATCTACGGGGGATGGGATGGGTAA
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