prot_Ecto-sp13_S_contig12002.1720.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12002.1720.1
Unique Nameprot_Ecto-sp13_S_contig12002.1720.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length183
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: D8LRU3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRU3_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.950e-120
Identity = 168/182 (92.31%), Postives = 173/182 (95.05%), Query Frame = 0 
Query:    1 MNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPRNAHTAVLDGETMIVIAGASPEEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCDLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 182
            MNGQDGVTFNDLFELRPGSTEGMEWV LPCVDIPPRNAHTAVLDGETMIVIAGASPE QTDDVFTIDLS+R+NLACRRVFC+P ESGTGE  CSEG+GGVPAAREMHSTCAYNS+GTTGER TTILLMGGRSAGGVL DLFALRTDTWTWKRLKDAPVARCAHSACFVQ AG MAIYGGWDG
Sbjct:  175 MNGQDGVTFNDLFELRPGSTEGMEWVPLPCVDIPPRNAHTAVLDGETMIVIAGASPEGQTDDVFTIDLSNRANLACRRVFCQPFESGTGERRCSEGVGGVPAAREMHSTCAYNSEGTTGERATTILLMGGRSAGGVLRDLFALRTDTWTWKRLKDAPVARCAHSACFVQAAGIMAIYGGWDG 356
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BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Match: T0RGB5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RGB5_SAPDV)

HSP 1 Score: 71.6 bits (174), Expect = 1.910e-11
Identity = 62/181 (34.25%), Postives = 82/181 (45.30%), Query Frame = 0 
Query:    7 VTFNDLFELRPGSTEGMEWVSLPCV--DIP-PRNAHTAVLDGETMIVIAGASPEE-QTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGVPAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLC-DLFALRTDTWTWKRLKDAPVARCAHSACFVQTAGTMAIYGGWDG 182
             TFND+  L    T    W S P V  D P PRNAHTAV+    M+VI G+SP +    DVF + + + + L   R+ C                G V A RE+H+    ++K     RE  I + GGR   G LC ++  L   +WTW         RC H    + T   +  YGGWDG
Sbjct:  125 TTFNDVHIL---DTATKSW-SAPIVLNDPPRPRNAHTAVVTTNGMVVIGGSSPTDGPMSDVFLLTVHEPT-LRWIRIDCN---------------GPVMAPRELHAAVRLSTK-----RER-IYVSGGRLENGQLCCEVATLDVASWTWHVQSSGGFRRCGHVIGLLDTG--IVQYGGWDG 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12002.1720.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRU3_ECTSI1.950e-12092.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
T0RGB5_SAPDV1.910e-1134.25Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015915Kelch-type beta propellerGENE3D2.120.10.80coord: 3..182
e-value: 1.9E-12
score: 48.8
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 22..182
NoneNo IPR availablePANTHERPTHR23244KELCH REPEAT DOMAINcoord: 3..113
coord: 95..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12002contigEcto-sp13_S_contig12002:2561..4589 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12002.1720.1mRNA_Ecto-sp13_S_contig12002.1720.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12002 3..5059 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12002.1720.1 ID=prot_Ecto-sp13_S_contig12002.1720.1|Name=mRNA_Ecto-sp13_S_contig12002.1720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MNGQDGVTFNDLFELRPGSTEGMEWVSLPCVDIPPRNAHTAVLDGETMIV
IAGASPEEQTDDVFTIDLSDRSNLACRRVFCKPSESGTGEIHCSEGIGGV
PAAREMHSTCAYNSKGTTGERETTILLMGGRSAGGVLCDLFALRTDTWTW
KRLKDAPVARCAHSACFVQTAGTMAIYGGWDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller